HI 
Trying to find the right way to perform correlation analysis between features of 2 sample sets.
will be grateful for some advice
thanks alot!
Adi.
Hi @Adi,
Your question may be a duplicate of this one or this one.
or possibly this one.
Short answer: QIIME 2 has various plugins for performing regression and correlation analyses, but it depends on what you are trying to correlate. The topic links will cover various options.
Thank you @Nicholas_Bokulich!
I saw those topics but I couldn’t find the right method for what i’m trying to do…
I have 2 different samples from each individual and I want to check if I have specific OTU in one sample how it is correlate to other OTU in the other sample.
Thanks again!
Hi @Adi,
Check out evaluate-composition. That action is intended for comparing observations to a ground-truth (e.g., the expected composition of a mock community) but can be used to compare any two sets of samples.
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