Convert qza output files to qzv ?

[M_F (Meriem)]

Hi,

I generated output files from alpha, beta diversity analysis in .qza format. How can i convert those files to qzv format in order to visualize them using qiime2 view tools ?

Thanks

[salias (Sergio Alías-Segura)]

Hi @M_F ,

For those kind of issues regarding some core aspects of QIIME 2, I recommend you the nice and up-to-dated tutorials (thanks to the QIIME 2 team!). For example, the diversity analysis section of the Moving Pictures tutorial addresses your current issue

Also, you may want to check the diversity plugin official documentation for further fine-tuning.

Best,

Sergio

[M_F (Meriem)]

@salias

Thanks for the reply. Please, how can i visualize output file from pco ?
https://docs.qiime2.org/2024.10/plugins/available/diversity/pcoa/

[salias (Sergio Alías-Segura)]

Hi,

If you use the built-in search funcion of the forum you will find that some people had the same question before. For example, looking for "create PCoA plot" gave me this post that addresses your issue.

If you have trouble with any of the steps of the typical QIIME 2 workflow, I recommend taking a look to the flowcharts of the Overview tutorial. If you see the Diversity analysis flowchart:

Now you have PCoAResults, so you need qiime emperor plot to generate the visualization.

As you can see, the previous post and the tutorial point to the same solution

Best,

Sergio