conversion .qza to .biom

Faiga · June 2, 2020, 1:45pm

Dear all,
Which commands should I use to convert a qza file to a biom one?
Thanks in advance for your help.
Faiga

timanix · June 2, 2020, 1:52pm

Hi!
directory for Biom file:

mkdir Biom

Export table to biom

qiime tools export \
    --input-path table.qza \
    --output-path Biom/

Optional! If you want to convert to .tsv:

biom convert -i Biom/feature-table.biom -o Biom/feature-table.tsv --to-tsv

Faiga · June 2, 2020, 2:47pm

Thank you very much!
Best

system · July 3, 2020, 8:47pm

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