conda activate error

lynneitelson · July 21, 2022, 2:29pm

Hi!

I tried to create an env environment and got the following error: what might be the problem?

Thanks!

-n qiime2-2022.2 --file qiime2-2022.2-py38-linux-conda.yml
Collecting package metadata (repodata.json): failed

>>>>>>>>>>>>>>>>>>>>>> ERROR REPORT <<<<<<<<<<<<<<<<<<<<<<

Traceback (most recent call last):
  File "/powerapps/share/centos7/miniconda/miniconda3-4.8.2-sage/lib/python3.7/site-packages/conda/exceptions.py", line 1079, in __call__
    return func(*args, **kwargs)
  File "/powerapps/share/centos7/miniconda/miniconda3-4.8.2-sage/lib/python3.7/site-packages/conda_env/cli/main.py", line 80, in do_call
    exit_code = getattr(module, func_name)(args, parser)
  File "/powerapps/share/centos7/miniconda/miniconda3-4.8.2-sage/lib/python3.7/site-packages/conda_env/cli/main_create.py", line 111, in execute
    result[installer_type] = installer.install(prefix, pkg_specs, args, env)
  File "/powerapps/share/centos7/miniconda/miniconda3-4.8.2-sage/lib/python3.7/site-packages/conda_env/installers/conda.py", line 32, in install
    prune=getattr(args, 'prune', False), update_modifier=UpdateModifier.FREEZE_INSTALLED)
  File "/powerapps/share/centos7/miniconda/miniconda3-4.8.2-sage/lib/python3.7/site-packages/conda/core/solve.py", line 117, in solve_for_transaction
    should_retry_solve)
  File "/powerapps/share/centos7/miniconda/miniconda3-4.8.2-sage/lib/python3.7/site-packages/conda/core/solve.py", line 158, in solve_for_diff
    force_remove, should_retry_solve)
  File "/powerapps/share/centos7/miniconda/miniconda3-4.8.2-sage/lib/python3.7/site-packages/conda/core/solve.py", line 262, in solve_final_state
    ssc = self._collect_all_metadata(ssc)
  File "/powerapps/share/centos7/miniconda/miniconda3-4.8.2-sage/lib/python3.7/site-packages/conda/common/io.py", line 88, in decorated
    return f(*args, **kwds)
  File "/powerapps/share/centos7/miniconda/miniconda3-4.8.2-sage/lib/python3.7/site-packages/conda/core/solve.py", line 415, in _collect_all_metadata
    index, r = self._prepare(prepared_specs)
  File "/powerapps/share/centos7/miniconda/miniconda3-4.8.2-sage/lib/python3.7/site-packages/conda/core/solve.py", line 1011, in _prepare
    self.subdirs, prepared_specs, self._repodata_fn)
  File "/powerapps/share/centos7/miniconda/miniconda3-4.8.2-sage/lib/python3.7/site-packages/conda/core/index.py", line 228, in get_reduced_index
    repodata_fn=repodata_fn)
  File "/powerapps/share/centos7/miniconda/miniconda3-4.8.2-sage/lib/python3.7/site-packages/conda/core/subdir_data.py", line 105, in query_all
    result = tuple(concat(executor.map(subdir_query, channel_urls)))
  File "/powerapps/share/centos7/miniconda/miniconda3-4.8.2-sage/lib/python3.7/concurrent/futures/_base.py", line 598, in result_iterator
    yield fs.pop().result()
  File "/powerapps/share/centos7/miniconda/miniconda3-4.8.2-sage/lib/python3.7/concurrent/futures/_base.py", line 435, in result
    return self.__get_result()
  File "/powerapps/share/centos7/miniconda/miniconda3-4.8.2-sage/lib/python3.7/concurrent/futures/_base.py", line 384, in __get_result
    raise self._exception
  File "/powerapps/share/centos7/miniconda/miniconda3-4.8.2-sage/lib/python3.7/concurrent/futures/thread.py", line 57, in run
    result = self.fn(*self.args, **self.kwargs)
  File "/powerapps/share/centos7/miniconda/miniconda3-4.8.2-sage/lib/python3.7/site-packages/conda/core/subdir_data.py", line 98, in <lambda>
    package_ref_or_match_spec))
  File "/powerapps/share/centos7/miniconda/miniconda3-4.8.2-sage/lib/python3.7/site-packages/conda/core/subdir_data.py", line 110, in query
    self.load()
  File "/powerapps/share/centos7/miniconda/miniconda3-4.8.2-sage/lib/python3.7/site-packages/conda/core/subdir_data.py", line 174, in load
    _internal_state = self._load()
  File "/powerapps/share/centos7/miniconda/miniconda3-4.8.2-sage/lib/python3.7/site-packages/conda/core/subdir_data.py", line 270, in _load
    fh.write(raw_repodata_str or '{}')
OSError: [Errno 122] Disk quota exceeded

$ /powerapps/share/centos7/miniconda/miniconda3-4.8.2-sage/bin/conda-env create -n qiime2-2022.2 --file qiime2-2022.2-py38-linux-conda.yml

environment variables:
AUTOJUMP_ERROR_PATH=/a/home/cc/students/lifesci/lynneitelson/.local/share/autojump/errors.
log
CIO_TEST=
CONDA_AUTO_UPDATE_CONDA=false
CONDA_EXE=/powerapps/share/centos7/miniconda/miniconda3-4.8.2-sage/bin/conda
CONDA_PYTHON_EXE=/powerapps/share/centos7/miniconda/miniconda3-4.8.2-sage/bin/python
CONDA_ROOT=/powerapps/share/centos7/miniconda/miniconda3-4.8.2-sage
CONDA_SHLVL=0
LD_LIBRARY_PATH=/powerapps/share/centos7/miniconda/miniconda3-4.8.2-sage/lib:/powerapp
s/share/centos7/miniconda/miniconda3-4.8.2-sage/pkgs/python-3.7.6-h037
1630_2/lib/python3.7/lib-dynload
MANPATH=/powerapps/share/centos7/miniconda/miniconda3-4.8.2-sage/share/man:/us
r/share/lmod/lmod/share/man::/opt/pbs/share/man:/opt/puppetlabs/puppet
/share/man
MODULEPATH=/powerapps/share/Modules/Centos7/modulefiles:/usr/share/Modules/module
files:/usr/local/Modules/3.2.10/modulefiles
PATH=/powerapps/share/centos7/miniconda/miniconda3-4.8.2-sage/bin:/powerapp
s/share/centos7/miniconda/miniconda3-4.8.2-sage/bin:/powerapps/share/c
entos7/miniconda/miniconda3-4.8.2-sage/condabin:/powerapps/share/cento
s7/miniconda/miniconda3-4.8.2-sage/bin:/a/home/cc/students/lifesci/lyn
neitelson/miniconda3/bin:/usr/bin:/usr/local/bin:/usr/local/sbin:/usr/
sbin:/usr/local.cc/bin:/mathematica/vers/11.2:/opt/pbs/bin:/powerapps/
share/bin:/opt/puppetlabs/bin:/a/home/cc/students/lifesci/lynneitelson
/.local/bin:/a/home/cc/students/lifesci/lynneitelson/bin
PYTHONPATH=/powerapps/share/centos7/miniconda/miniconda3-4.8.2-sage/lib/python3.7
REQUESTS_CA_BUNDLE=
SSL_CERT_FILE=
__LMOD_REF_COUNT_LD_LIBRARY_PATH=/powerapps/share/centos7/miniconda/miniconda3-4.8.2-sage/lib:1;/powera
pps/share/centos7/miniconda/miniconda3-4.8.2-sage/pkgs/python-3.7.6-h0
371630_2/lib/python3.7/lib-dynload:1
__LMOD_REF_COUNT_MANPATH=/powerapps/share/centos7/miniconda/miniconda3-4.8.2-sage/share/man:1;/
usr/share/lmod/lmod/share/man:1;/opt/pbs/share/man:1;/opt/puppetlabs/p
uppet/share/man:1
__LMOD_REF_COUNT_MODULEPATH=/powerapps/share/Modules/Centos7/modulefiles:1;/usr/share/Modules/modu
lefiles:1;/usr/local/Modules/3.2.10/modulefiles:1
__LMOD_REF_COUNT_PATH=/powerapps/share/centos7/miniconda/miniconda3-4.8.2-sage/bin:1;/a/home
/cc/students/lifesci/lynneitelson/miniconda3/bin:1;/usr/bin:2;/usr/loc
al/bin:2;/usr/local/sbin:1;/usr/sbin:1;/usr/local.cc/bin:1;/mathematic
a/vers/11.2:1;/opt/pbs/bin:1;/powerapps/share/bin:1;/opt/puppetlabs/bi
n:1;/a/home/cc/students/lifesci/lynneitelson/.local/bin:1;/a/home/cc/s
tudents/lifesci/lynneitelson/bin:1

 active environment : None
        shell level : 0
   user config file : /a/home/cc/students/lifesci/lynneitelson/.condarc

populated config files :
conda version : 4.8.3
conda-build version : not installed
python version : 3.7.6.final.0
virtual packages : __glibc=2.17
base environment : /powerapps/share/centos7/miniconda/miniconda3-4.8.2-sage (read only)
channel URLs : main/linux-64
main/noarch
r/linux-64
r/noarch
package cache : /powerapps/share/centos7/miniconda/miniconda3-4.8.2-sage/pkgs
/a/home/cc/students/lifesci/lynneitelson/.conda/pkgs
envs directories : /a/home/cc/students/lifesci/lynneitelson/.conda/envs
/powerapps/share/centos7/miniconda/miniconda3-4.8.2-sage/envs
platform : linux-64
user-agent : conda/4.8.3 requests/2.23.0 CPython/3.7.6 Linux/3.10.0-1062.18.1.el7.x86_64 centos/7.9.2009 glibc/2.17
UID:GID : 126143:1399
netrc file : None
offline mode : False

lizgehret · July 21, 2022, 6:05pm

Hi @lynneitelson,

Welcome to the forum!

This is where the issue is stemming from:

This message indicates that you have run out of the space in your home directory or temp directory. There are quite a few steps you can take to resolve this issue:

Clearing out your tmp directory
Clean up your conda installation using the conda clean --all command
Contact your system admin to request a quota increase for your machine

Here is a great forum post I'd recommend reviewing for additional details on this issue, and steps you can take on your end:

Hope this helps! Cheers

system · August 22, 2022, 12:06am

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