Hi Qiime team, I am an undergrad working on a comparative microbiome research project with @Sam_Degregori. I am importing casava 1.8 paired-end files formatted as so:
However, I keep getting this error.
qiime tools import \
There was a problem importing zoelzer:
Missing one or more files for CasavaOneEightSingleLanePerSampleDirFmt: '.+_.+_L[0-9][0-9][0-9]_R_001\.fastq\.gz'
Is there a way to rename my files to match the required format for Casava 1.8? I know I can manifest these, but because of the metadata we have at hand, it would be much easier to import the Casava way. When we manifest it, the sample IDs are nonexistent and we would have to make up our own, but if we use Casava we know the file names are in the fastq.gz files. Any help would be appreciated it! Thank you!