cant save heatmap in SVG format from mmvec plugin

khemlalnirmalkar · September 8, 2020, 3:07pm

Hello,
I am using mmvec qiime2 plugin and i have an issue,
If you see my heatmap, log scale and metabolite names are interfering with each other. Since qiime2 view is giving me only PDF format to save, i can't edit it. Is there any way to save it in an SVG format? i couldn't find the option.
I looked for similar questions in the forum but didn't work for me.
Thanks,

timanix · September 8, 2020, 3:25pm

Hi, could you share a .qzv file? That's strange

khemlalnirmalkar · September 8, 2020, 3:58pm

Hi,
Please find the attached qzv file,

NT_ranks-heatmap_label.qzv (568.7 KB)

Thanks for quick response,
Khem

timanix · September 9, 2020, 6:29am

Hi, looks like the problem with heatmap visualization.
I think that you can solve it or by reducing the dataset, or by redrawing it outside Qiime2

thermokarst · September 9, 2020, 3:12pm

@mortonjt - can you comment on this when you get time? Thanks!

mortonjt · September 9, 2020, 3:23pm

You should be able to open up the pdf file in software like inkscape -- that would allow you to save to svg.

khemlalnirmalkar · September 10, 2020, 2:47am

Inkscape worked,

Thanks Jamie @mortonjt ,

Khem

system · October 11, 2020, 8:47am

This topic was automatically closed 31 days after the last reply. New replies are no longer allowed.