Hi all,
I have a quick questions. Can we do pairwise adonis test in Qiime2.
I have ran the adonis test for my data, but did not get the pairwise results.
I got ht epairwise result from the beta-group-significance test.
Thank you!!
Hi all,
I have a quick questions. Can we do pairwise adonis test in Qiime2.
I have ran the adonis test for my data, but did not get the pairwise results.
I got ht epairwise result from the beta-group-significance test.
Thank you!!
No. If you want the pairwise test results, run beta-group-significance. It is the same test under the hood — PERMANOVA — so you can relate it back to your adonis test results.
Thank you so much for your quick reply.
Do you mean that the pairwise PERMANOVA result equal to the one-way pairwise adonis test results?
Thank you!!
Yes. You could filter your feature table to only contain each pair of interest and run adonis with a single factor and yes you should get more or less the same result as the pairwise beta-group-significance tests (though adonis and beta-group-significance are two different implementations of permanova so may give slightly different results).
Thank you so much for your clarification!!
This topic was automatically closed 31 days after the last reply. New replies are no longer allowed.