I am trying to run Qiime2 to taxonomically annotate proteins. So far, I have run this command to import a FASTA as a Qiime object:
qiime tools import --type "FeatureData[ProteinSequence]" --input-path protein_fasta_qiime2_test/non_chimeric_prot_corr_q2_import_test.fasta --output-path sequences.qza
and have tried running this command to classify the sequences
qiime feature-classifier classify-hybrid-vsearch-sklearn
but it doesn't accept "FeatureData[ProteinSequence]" as a valid input format. How can I classify protein sequences taxonomically with Qiime2? Also, would it be preferable (faster or more accurate) to common methods with BLAST or DIAMOND?