Can I turn fasta into qza for taxonomic classification?

[SoilRotifer (Mike Robeson)]

@microbiotaphyto

I need a table with taxonomy as rows, the samples as columns and the read counts as intersections. Can I get this with this tutorial Link BIOM table with taxonomy - #3 by Ghaz ? Or to do this one I need a BIOM table first (no ideia how to use biom)?

Yep this is essentially the same output as 3.

@microbiotaphyto

BUT the taxonomy is written in an ugly way, like this example:
k__Bacteria;p__Bacteroidetes;c__Bacteroidia;o__Bacteroidales;f__Bacteroidaceae;g__Bacteroides;s__ovatus

But this is the taxonomy. You can use qiime rescript edit-taxonomy, to edit / truncate the taxonomy strings prior to using this for making your intended output.

@microbiotaphyto

I need a table with taxonomy as rows, the samples as columns and the read counts as intersections.

This is exactly what option 2 will provide you when you run in the order I suggested:

• qiime taxa collapse...
• qiime feature-table transpose ...
• qiime metadata tabulate ...

Not only does this provide the visualization, but then you can download the TSV file from this visualization.