Hi @sthansen! Thanks for the post.
For the cluster installation would you be able to give me the git version that’s on your cluster? You can retrieve that with
git --version
For your local PC, it looks like breakaway wasn’t installing on your machine because of a devtools issue. Are you using a Linux machine perchance?
If so, could you try these set of installation commands and see if you’re able to run your data?
source activate qiime2-2019.10
pip install git+https://github.com/statdivlab/q2-breakaway.git
R -e 'Sys.setenv(TAR = "/bin/tar"); library(devtools); devtools::install_github("adw96/breakaway")'
qiime dev refresh-cache
Let me know how you go!
Pauline