When I installed the breakaway dependencies I received the following error…
xcrun: error: invalid active developer path (/Library/Developer/CommandLineTools), missing xcrun at: /Library/Developer/CommandLineTools/usr/bin/xcrun
Then when I tried to install breakaway and q2-breakaway I got the following error…
ERROR: Command errored out with exit status 1: git clone -q https://github.com/statdivlab/q2-breakaway.git /private/var/folders/cr/nkn3f6j93cx5cx5y1z_61mj1l2p_md/T/pip-req-build-_kc6kvwh Check the logs for full command output.
I appreciate the response in the original message. I realize in hindsight that that my question would have been easier to address if I had included that I was using MacOS 10.15 Catalina as it seems to be a Mac specific problem.
Side note, this was also affecting my ability to download some packages in R and it was generally driving me bananas.