I have analyzed my 16S data and perfomed the taxonomic classification using qiime feature-classifier classify-sklearn \ with the greengenes database. Some samples
are assigned at the order or genus level, which is to be expected since the amplicons are 190 bp in lenght.
However, I would like to blast against NCBI the representative sequence of the mentioned samples. How can I select the representative sequence of each sample that I want to compare with blast?
Thanks in advance,