I am trying to import a biom table I made in Qiime1 in to Qiime2.
When I run this code:
qiime tools import --input-path feature-table-v100.biom --type ‘FeatureTable[Frequency]’ --source-format BIOMV100Format --output-path funseqs-featuretable.qza
I get this error:
Error: Invalid value for “–input-path”: Path “feature-table-v210.biom” does not exist.
Anybody know what’s going on?
This means that the file
feature-table-v210.biom couldn’t be found. Are you working in the same directory that this file is in? You can run
ls to see the contents of your working directory - you might need to update the path to include any subdirectories this file might be sitting in. Let us know if that gets you moving again. Thanks!
Haha wow just realized my error. That was dumb. Thanks for your help & I’ll stop posting questions late at night…
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