betadisper in R via QIIME2 results

Hi @Bing,
Assuming betadisper is the same as permdisp (sorry haven't heard betadisper), check out the beta group-significance plugin. The default test is a PERMANOVA but you can change that to permdisp easily.

  --p-method TEXT Choices('permanova', 'anosim', 'permdisp')
                       The group significance test to be applied.
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