beta diversity PERMANOVA output

[rr220 (R)]

Hello,
I wanted to know how to obtain PERMANOVA output for beta diversity. In this regard I have following query:

For running core metrics I ran following command:
qiime diversity core-metrics-phylogenetic
--i-phylogeny rooted-tree.qza
--i-table table-dada2.qza
--p-sampling-depth <23192>
--m-metadata-file metadata.tsv
--output-dir core-metrics-results

This command generated several files. Amongst these were files labelled bray_curtis_pcoa_results.qza, jaccard_pcoa_results.qza, unweighted_unifrac_pcoa_results.qza and weighted_unifrac_pcoa_results.qza Are these files the PERMANOVA stats output? If yes, then how can i view these as tsv or qzv files? If these are not PERMANOVA output then what command I need to use to get it?

Best,
R

[Keegan-Evans]

@rr220,

You will want to use those files to run diversity beta-group-significance (DOCS). You also might find this high-level tutorial helpful, as well as the diversity analysis section in the Moving Pictures tutorial.

[rr220 (R)]

Thank you for your help.