I wanted to know how to obtain PERMANOVA output for beta diversity. In this regard I have following query:
For running core metrics I ran following command:
qiime diversity core-metrics-phylogenetic
This command generated several files. Amongst these were files labelled bray_curtis_pcoa_results.qza, jaccard_pcoa_results.qza, unweighted_unifrac_pcoa_results.qza and weighted_unifrac_pcoa_results.qza Are these files the PERMANOVA stats output? If yes, then how can i view these as tsv or qzv files? If these are not PERMANOVA output then what command I need to use to get it?