Best way to turn OTU feature-table.biom file to tsv format

[Faizan (Muhammad Faizan Khalid)]

HI,

I need to present an OTU table to my supervisor and managed to obtain a .txt file from the table.qza file. To get the txt file, I used:

biom convert -i feature-table.biom -o otu_table.txt --to-tsv

My question is, how do I get a .tsv file. Is there a simple way?

[thermokarst (Matthew Ryan Dillon)]

Hey @Faizan!

@Faizan

My question is, how do I get a .tsv file. Is there a simple way?

I am confused --- you mentioned above that you got a file from biom convert:

@Faizan

o get the txt file, I used:

biom convert -i feature-table.biom -o otu_table.txt --to-tsv

Can you provide some more detail for your question? Thanks!