@Nicholas_Bokulich
> (qiime2-2018.11) bash-3.2$ qiime vsearch dereplicate-sequences \
> --i-sequences Hines_SeqData.qza \
> --o-dereplicated-table Hines_table.qza \
> --o-dereplicated-sequences Hines_rep_seqs.qza \
> --verbose
Running external command line application. This may print messages to stdout and/or stderr.
The command being run is below. This command cannot be manually re-run as it will depend on temporary files that no longer exist.
Command: vsearch --derep_fulllength /var/folders/x1/8vlx8m5n2zn5hqc34w_3b8m40000gq/T/qiime2-archive-oj1cuzld/9334ad92-b7c1-4f4a-80c6-0135d76906a7/data/seqs.fna --output /var/folders/x1/8vlx8m5n2zn5hqc34w_3b8m40000gq/T/q2-DNAFASTAFormat-zg8dy1a9 --relabel_sha1 --relabel_keep --uc /var/folders/x1/8vlx8m5n2zn5hqc34w_3b8m40000gq/T/tmp7e33ao9j --qmask none --xsize
vsearch v2.7.0_macos_x86_64, 16.0GB RAM, 4 cores
Reading file /var/folders/x1/8vlx8m5n2zn5hqc34w_3b8m40000gq/T/qiime2-archive-oj1cuzld/9334ad92-b7c1-4f4a-80c6-0135d76906a7/daReading file /var/folders/x1/8vlx8m5n2zn5hqc34w_3b8m40000gq/T/qiime2-archive-oj1cuzld/9334ad92-b7c1-4f4a-80c6-0135d76906a7/daReading file /var/folders/x1/8vlx8m5n2zn5hqc34w_3b8m40000gq/T/qiime2-archive-oj1cuzld/9334ad92-b7c1-4f4a-80c6-0135d76906a7/daReading file /var/folders/x1/8vlx8m5n2zn5hqc34w_3b8m40000gq/T/qiime2-archive-oj1cuzld/9334ad92-b7c1-4f4a-80c6-0135d76906a7/daReading file /var/folders/x1/8vlx8m5n2zn5hqc34w_3b8m40000gq/T/qiime2-archive-oj1cuzld/9334ad92-b7c1-4f4a-80c6-0135d76906a7/daReading file /var/folders/x1/8vlx8m5n2zn5hqc34w_3b8m40000gq/T/qiime2-archive-oj1cuzld/9334ad92-b7c1-4f4a-80c6-0135d76906a7/daReading file /var/folders/x1/8vlx8m5n2zn5hqc34w_3b8m40000gq/T/qiime2-archive-oj1cuzld/9334ad92-b7c1-4f4a-80c6-0135d76906a7/daReading file /var/folders/x1/8vlx8m5n2zn5hqc34w_3b8m40000gq/T/qiime2-archive-oj1cuzld/9334ad92-b7c1-4f4a-80c6-0135d76906a7/daReading file /var/folders/x1/8vlx8m5n2zn5hqc34w_3b8m40000gq/T/qiime2-archive-oj1cuzld/9334ad92-b7c1-4f4a-80c6-0135d76906a7/daReading file /var/folders/x1/8vlx8m5n2zn5hqc34w_3b8m40000gq/T/qiime2-archive-oj1cuzld/9334ad92-b7c1-4f4a-80c6-0135d76906a7/daReading file /var/folders/x1/8vlx8m5n2zn5hqc34w_3b8m40000gq/T/qiime2-archive-oj1cuzld/9334ad92-b7c1-4f4a-80c6-0135d76906a7/daReading file /var/folders/x1/8vlx8m5n2zn5hqc34w_3b8m40000gq/T/qiime2-archive-oj1cuzld/9334ad92-b7c1-4f4a-80c6-0135d76906a7/daReading file /var/folders/x1/8vlx8m5n2zn5hqc34w_3b8m40000gq/T/qiime2-archive-oj1cuzld/9334ad92-b7c1-4f4a-80c6-0135d76906a7/daReading file /var/folders/x1/8vlx8m5n2zn5hqc34w_3b8m40000gq/T/qiime2-archive-oj1cuzld/9334ad92-b7c1-4f4a-80c6-0135d76906a7/daReading file /var/folders/x1/8vlx8m5n2zn5hqc34w_3b8m40000gq/T/qiime2-archive-oj1cuzld/9334ad92-b7c1-4f4a-80c6-0135d76906a7/daReading file /var/folders/x1/8vlx8m5n2zn5hqc34w_3b8m40000gq/T/qiime2-archive-oj1cuzld/9334ad92-b7c1-4f4a-80c6-0135d76906a7/daReading file /var/folders/x1/8vlx8m5n2zn5hqc34w_3b8m40000gq/T/qiime2-archive-oj1cuzld/9334ad92-b7c1-4f4a-80c6-0135d76906a7/daReading file /var/folders/x1/8vlx8m5n2zn5hqc34w_3b8m40000gq/T/qiime2-archive-oj1cuzld/9334ad92-b7c1-4f4a-80c6-0135d76906a7/data/seqs.fna 100%
126219 nt in 342 seqs, min 90, max 945, avg 369
Dereplicating 100%
Sorting 100%
311 unique sequences, avg cluster 1.1, median 1, max 3
Writing output file 100%
Writing uc file, first part 100%
Writing uc file, second part 100%
Traceback (most recent call last):
File "/Users/haselkornlab/anaconda3/envs/qiime2-2018.11/lib/python3.5/site-packages/q2cli/commands.py", line 274, in call
results = action(**arguments)
File "<decorator-gen-128>", line 2, in dereplicate_sequences
File "/Users/haselkornlab/anaconda3/envs/qiime2-2018.11/lib/python3.5/site-packages/qiime2/sdk/action.py", line 231, in bound_callable
output_types, provenance)
File "/Users/haselkornlab/anaconda3/envs/qiime2-2018.11/lib/python3.5/site-packages/qiime2/sdk/action.py", line 362, in callable_executor
output_views = self._callable(**view_args)
File "/Users/haselkornlab/anaconda3/envs/qiime2-2018.11/lib/python3.5/site-packages/q2_vsearch/_cluster_sequences.py", line 134, in dereplicate_sequences
table = _parse_uc(out_uc)
File "/Users/haselkornlab/anaconda3/envs/qiime2-2018.11/lib/python3.5/site-packages/q2_vsearch/_cluster_sequences.py", line 70, in _parse_uc
observation_id = fields[9].split()[0]
IndexError: list index out of range
Plugin error from vsearch:
list index out of range
See above for debug info.