Continuing the discussion from Batch export for files:
Hello,
The code provided here doesn't work for new versions of QIIME, I think because of the output path instead of directory in the new version. Any idea of how to make this work?
Continuing the discussion from Batch export for files:
Hello,
The code provided here doesn't work for new versions of QIIME, I think because of the output path instead of directory in the new version. Any idea of how to make this work?
Good afternoon,
Looks like the new command needs a --input-path
flag:
qiime tools export \
--input-path feature-table.qza \
--output-path exported-feature-table
Try editing that script, and see how it works!
Colin
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