Batch export_continued

Continuing the discussion from Batch export for files:

Hello,

The code provided here doesn’t work for new versions of QIIME, I think because of the output path instead of directory in the new version. Any idea of how to make this work?

Good afternoon,

Looks like the new command needs a --input-path flag:

qiime tools export \
  --input-path feature-table.qza \
  --output-path exported-feature-table

Try editing that script, and see how it works!

Colin

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