AttributeError: type object 'object' has no attribute 'dtype'

[kam]

Hi, I have the exact same problem as described in this recent post:

qiime diversity beta-group-significance

I'm trying to run beta group significance using the code below in qiime2 2022.2 qiime diversity beta-group-significance --i-distance-matrix core-metrics-results/unweighted_unifrac_distance_matrix.qza --m-metadata-file sample-metadata.txt --m-metadata-column depth --o-visualization core-metrics-results/unweighted-unifrac-depth-significance.qzv --p-pairwise however, I'm continuously getting the error below Traceback (most recent call last): File "/home/qiim…

I got the same output as @tafara_bute while running both command @ebolyen suggested (qiime and conda version)

Then, I have updated conda as eboylen suggested:
conda install pandas=1.2.5

But not I get the following error while running beta-group-sig:

Any ideas what to do or should I just reinstall my qiime2-2022.2 env?

[kam]

So far my solution is to go back to qiime 2021.11 which works fine.

[ebolyen (Evan Bolyen)]

Hey @kam,

It looks like your pandas install has become inconsistent, I've actually never seen an error like that at runtime and without the traceback, there's little I can really say as to the cause.

Your best bet is probably to reinstall the 2022.2 env (or update to 2022.8) and try again.