module load singularity/3
/workspace/hraegb/singularity/qiime-2019.7-picrust2.sif picrust2 full-pipeline
to obtain the KO.qza, PA.qza, EC.qza files. Then I was able to visualise them, as well as extract the biom data to tsv. Core diversity etc worked. I have two queries
The KO had IDs from KOOOO1 to K19789. There is a script to add descriptions and levels of the pathways here, but that does not work in the plugin.So then how do we annotate them and do the level wise analysis?
What is the best way to analyse the data? I have attached here the tsv for a look. extracted-KO-feature-table-biom.tsv (759.9 KB)
Also is it possible to look associate OTUs with the functional pathways at all within this plugin or do we have to use the full picrust?
I would really appreciate your help.
Thanks very much