I am wondering what correction factor test (ex: Bonferroni, Tukey’s etc) does the q-value stands that I get in the results after running the alpha-group significance command?

Thanks so much!

Hi @rnasrah,
This command uses Benjamini/Hochberg (non-negative) FDR adjustment. Thanks for posting!

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Thank you!
Is there a way I can use other correction factor testing in Qiime (other than Benjamini/Hochberg)?

Thanks once again!

Hi @rnasrah,
No, currently this method does not support different methods for multiple test correction. I have raised a feature request so that we may add support in the future — if you have particular methods that you would like to see, please add a comment on that feature request or let us know here.


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