Hi everyone!
I was wondering if its possible to run an alpha diversity analysis on a csv file that has its taxonomy assigned. First I took my .fastq files through a metagenomics pipeline (IDseq) and after filtering the host it gave me the number of reads mapped to bacteria, fungi, arches, virus, and non-aligned reads. I would like to know if there’s any way to convert a .csv file with taxonomy and reada into a qiime2 artifact that could be run through that alpha diversity analysis (and potentially pcoa and permanova)?
Thanks a lot!
Daniel