aldex2 problem with R?

Imindias · October 22, 2019, 8:19am

Dear @dgiguer and @Nicholas_Bokulich,
thanks for your support. Yes, it was a problem with the installation with R. For others, what worked for me is your instructions in gitHub

github.com

ggloor/q2-aldex2/blob/master/README.md

# q2-aldex2
qiime2 plugin for aldex2 for differential abundance analysis

# Installation
Within your qiime2 environment run
```
conda install bioconductor-aldex2 -c defaults -c bioconda -c conda-forge
```

```
conda install -c dgiguere q2-aldex2
```

To look at the command line, type
```
qiime aldex2 --help
```

with this, no problems. Well, my data that are not so good

best,

Isabel