Great, thanks!
I will try R, but my R skills aren't great yet. I am obsessed with using this plugin as it is really good for this kind of data. Ttest it is =)
Do I need to split it into two levels? I have four levels, with 1 level being a control? Or will it do pairwise associations between each level? Your R documentation seems to be a 2 level analysis.
Just to let you know, your program is AMAZING! I love it, I love the output, and I love how clean the analysis is.
Bravo to you and your team!
Hi Christina,
When doing the t-test, it will have to be pairwise comparisons. The glm module is used for more than two conditions, and we are working to get this included in the qiime plugin as well! For now it is only available in the R package.
And thanks! 
I do have to mention that Greg Gloor is the brains behind this package!
Cheers,
Dan
This package made my week. Ya'll are the best =)
Thank you!
Hi @dgiguer , has there been any update on the use of the glm function for the qiime2 plugin?
Hi @Zach_Burcham,
Unfortunately not yet. The current work around is using the R package.
Cheers,
Dan