Hello
I am trying to install Aldex plugin as follow, however it gives error :
(base) temp@temp-B365M-DS3H:~$ conda install -c dgiguere q2-aldex2
Retrieving notices: ...working... done
Collecting package metadata (current_repodata.json): done
Solving environment: unsuccessful initial attempt using frozen solve. Retrying with flexible solve.
Solving environment: unsuccessful attempt using repodata from current_repodata.json, retrying with next repodata source.
ResolvePackageNotFound:
- conda==23.5.2
I then tried following command mentioned in a post
(base) temp@temp-B365M-DS3H:~$ conda install bioconductor-aldex2 -c defaults -c bioconda -c conda-forge
Collecting package metadata (current_repodata.json): done
Solving environment: done
==> WARNING: A newer version of conda exists. <==
current version: 23.7.4
latest version: 23.11.0
Please update conda by running
$ conda update -n base -c defaults conda
Or to minimize the number of packages updated during conda update use
conda install conda=23.11.0
Package Plan
environment location: /home/temp/miniconda3
added / updated specs:
- bioconductor-aldex2
The following packages will be downloaded:
package | build
---------------------------|-----------------
_r-mutex-1.0.0 | anacondar_1 2 KB
argcomplete-1.12.3 | pyhd3eb1b0_0 35 KB
bioconductor-aldex2-1.34.0 | r43hdfd78af_0 2.6 MB bioconda
bioconductor-biobase-2.62.0| r43ha9d7317_1 2.4 MB bioconda
bioconductor-biocgenerics-0.48.1| r43hdfd78af_2 643 KB bioconda
bioconductor-biocparallel-1.36.0| r43hf17093f_1 1.6 MB bioconda
bioconductor-data-packages-20231203| hdfd78af_0 406 KB bioconda
bioconductor-delayedarray-0.28.0| r43ha9d7317_1 2.3 MB bioconda
bioconductor-genomeinfodb-1.38.1| r43hdfd78af_1 4.2 MB bioconda
bioconductor-genomeinfodbdata-1.2.11| r43hdfd78af_1 8 KB bioconda
bioconductor-genomicranges-1.54.1| r43ha9d7317_1 2.2 MB bioconda
bioconductor-iranges-2.36.0| r43ha9d7317_1 2.5 MB bioconda
bioconductor-matrixgenerics-1.14.0| r43hdfd78af_1 453 KB bioconda
bioconductor-multtest-2.58.0| r43ha9d7317_0 888 KB bioconda
bioconductor-s4arrays-1.2.0| r43ha9d7317_1 795 KB bioconda
bioconductor-s4vectors-0.40.2| r43ha9d7317_1 2.4 MB bioconda
bioconductor-sparsearray-1.2.2| r43ha9d7317_1 1.6 MB bioconda
bioconductor-summarizedexperiment-1.32.0| r43hdfd78af_0 1.9 MB bioconda
bioconductor-xvector-0.42.0| r43ha9d7317_1 738 KB bioconda
bioconductor-zlibbioc-1.48.0| r43ha9d7317_1 25 KB bioconda
bwidget-1.9.11 | 1 116 KB
c-ares-1.19.1 | h5eee18b_0 118 KB
ca-certificates-2023.12.12 | h06a4308_0 126 KB
cairo-1.18.0 | h3faef2a_0 959 KB conda-forge
certifi-2023.11.17 | py311h06a4308_0 159 KB
curl-8.5.0 | hdbd6064_0 86 KB
expat-2.5.0 | h6a678d5_0 172 KB
font-ttf-dejavu-sans-mono-2.37| hd3eb1b0_0 335 KB
font-ttf-inconsolata-2.001 | hcb22688_0 83 KB
font-ttf-source-code-pro-2.030| hd3eb1b0_0 654 KB
font-ttf-ubuntu-0.83 | h8b1ccd4_0 1.5 MB
fonts-anaconda-1 | h8fa9717_0 3 KB
fonts-conda-ecosystem-1 | hd3eb1b0_0 5 KB
freetype-2.12.1 | h4a9f257_0 626 KB
fribidi-1.0.10 | h7b6447c_0 103 KB
gcc_impl_linux-64-13.2.0 | h338b0a0_3 50.2 MB conda-forge
gfortran_impl_linux-64-13.2.0| h76e1118_3 15.1 MB conda-forge
graphite2-1.3.14 | h295c915_1 97 KB
gsl-2.7.1 | h6e86dc7_1 2.2 MB
gxx_impl_linux-64-13.2.0 | h338b0a0_3 12.6 MB conda-forge
harfbuzz-8.3.0 | h3d44ed6_0 1.5 MB conda-forge
importlib-metadata-4.11.3 | py311h06a4308_0 42 KB
importlib_metadata-4.11.3 | hd3eb1b0_0 12 KB
jq-1.6 | h27cfd23_1000 257 KB
libblas-3.9.0 |1_h86c2bf4_netlib 199 KB conda-forge
libcurl-8.5.0 | h251f7ec_0 416 KB
libgcc-devel_linux-64-13.2.0| ha9c7c90_103 2.5 MB conda-forge
libglib-2.78.3 | h783c2da_0 2.6 MB conda-forge
libiconv-1.17 | hd590300_2 689 KB conda-forge
libjpeg-turbo-3.0.0 | hd590300_1 604 KB conda-forge
liblapack-3.9.0 |5_h92ddd45_netlib 3.0 MB conda-forge
libnghttp2-1.57.0 | h2d74bed_0 674 KB
libpng-1.6.39 | h5eee18b_0 304 KB
libsanitizer-13.2.0 | h7e041cc_3 3.9 MB conda-forge
libsolv-0.7.24 | he621ea3_0 492 KB
libsqlite-3.44.2 | h2797004_0 826 KB conda-forge
libstdcxx-devel_linux-64-13.2.0| ha9c7c90_103 12.2 MB conda-forge
libtiff-4.6.0 | ha9c0a0a_2 277 KB conda-forge
libwebp-base-1.3.2 | h5eee18b_0 387 KB
libxcb-1.15 | h7f8727e_0 505 KB
libxcrypt-4.4.36 | hd590300_1 98 KB conda-forge
libxml2-2.10.4 | hf1b16e4_1 753 KB
make-4.2.1 | h1bed415_1 415 KB
oniguruma-6.9.7.1 | h27cfd23_0 244 KB
pango-1.50.14 | ha41ecd1_2 433 KB conda-forge
pcre2-10.42 | hebb0a14_0 1.5 MB
pixman-0.43.0 | h59595ed_0 378 KB conda-forge
python-3.11.7 |hab00c5b_1_cpython 29.4 MB conda-forge
pyyaml-6.0.1 | py311h5eee18b_0 210 KB
r-abind-1.4_5 | r43h142f84f_0 74 KB
r-base-4.3.2 | hb8ee39d_1 24.5 MB conda-forge
r-bh-1.81.0_1 | r43h6115d3f_0 9.7 MB
r-bitops-1.0_7 | r43h76d94ec_0 36 KB
r-codetools-0.2_19 | r43h6115d3f_0 103 KB
r-cpp11-0.4.6 | r43h6115d3f_0 221 KB
r-crayon-1.5.2 | r43h6115d3f_0 159 KB
r-deldir-1.0_9 | r43h640688f_1 294 KB
r-directlabels-2023.8.25 | r43h142f84f_0 880 KB
r-formatr-1.14 | r43h6115d3f_0 158 KB
r-futile.logger-1.4.3 | r43h6115d3f_0 100 KB
r-futile.options-1.0.1 | r43h142f84f_0 26 KB
r-interp-1.1_4 | r43hb5eb8f6_0 1.4 MB
r-jpeg-0.1_10 | r43h76d94ec_0 50 KB
r-lambda.r-1.2.4 | r43h142f84f_0 115 KB
r-lattice-0.22_5 | r43h76d94ec_0 1.3 MB
r-latticeextra-0.6_30 | r43h6115d3f_0 2.1 MB
r-mass-7.3_60 | r43h76d94ec_0 1.1 MB
r-matrix-1.6_1.1 | r43h76d94ec_0 3.7 MB
r-matrixstats-1.0.0 | r43h76d94ec_0 445 KB
r-nada-1.6_1.1 | r43h142f84f_0 477 KB
r-png-0.1_8 | r43h76d94ec_0 60 KB
r-quadprog-1.5_8 | r43h640688f_0 44 KB
r-rcolorbrewer-1.1_3 | r43h6115d3f_1 57 KB
r-rcpp-1.0.11 | r43h884c59f_0 1.9 MB
r-rcpparmadillo-0.12.6.4.0 | r43h884c59f_0 868 KB
r-rcppeigen-0.3.3.9.3 | r43h884c59f_0 1.2 MB
r-rcppgsl-0.3.13 | r43h884c59f_0 205 KB
r-rcppziggurat-0.1.6 | r43h884c59f_0 413 KB
r-rcurl-1.98_1.12 | r43h76d94ec_0 795 KB
r-rfast-2.0.8 | r43h884c59f_0 2.1 MB
r-snow-0.4_4 | r43h142f84f_0 110 KB
r-survival-3.5_7 | r43h76d94ec_0 5.9 MB
r-truncnorm-1.0_9 | r43h76d94ec_0 34 KB
r-zcompositions-1.4.1 | r43h6115d3f_0 305 KB
sed-4.8 | h7b6447c_0 238 KB
tktable-2.10 | h14c3975_0 86 KB
toml-0.10.2 | pyhd3eb1b0_0 20 KB
xmltodict-0.13.0 | py311h06a4308_0 22 KB
xorg-libxt-1.3.0 | hd590300_1 370 KB conda-forge
xorg-xproto-7.0.31 | h27cfd23_1007 73 KB
yaml-0.2.5 | h7b6447c_0 75 KB
yq-2.12.0 | pyhd3eb1b0_0 18 KB
zipp-3.17.0 | py311h06a4308_0 24 KB
------------------------------------------------------------
Total: 239.1 MB
The following NEW packages will be INSTALLED:
_r-mutex pkgs/main/linux-64::_r-mutex-1.0.0-anacondar_1
argcomplete pkgs/main/noarch::argcomplete-1.12.3-pyhd3eb1b0_0
binutils_impl_lin~ conda-forge/linux-64::binutils_impl_linux-64-2.40-hf600244_0
bioconductor-alde~ bioconda/noarch::bioconductor-aldex2-1.34.0-r43hdfd78af_0
bioconductor-biob~ bioconda/linux-64::bioconductor-biobase-2.62.0-r43ha9d7317_1
bioconductor-bioc~ bioconda/noarch::bioconductor-biocgenerics-0.48.1-r43hdfd78af_2
bioconductor-bioc~ bioconda/linux-64::bioconductor-biocparallel-1.36.0-r43hf17093f_1
bioconductor-data~ bioconda/noarch::bioconductor-data-packages-20231203-hdfd78af_0
bioconductor-dela~ bioconda/linux-64::bioconductor-delayedarray-0.28.0-r43ha9d7317_1
bioconductor-geno~ bioconda/noarch::bioconductor-genomeinfodb-1.38.1-r43hdfd78af_1
bioconductor-geno~ bioconda/noarch::bioconductor-genomeinfodbdata-1.2.11-r43hdfd78af_1
bioconductor-geno~ bioconda/linux-64::bioconductor-genomicranges-1.54.1-r43ha9d7317_1
bioconductor-iran~ bioconda/linux-64::bioconductor-iranges-2.36.0-r43ha9d7317_1
bioconductor-matr~ bioconda/noarch::bioconductor-matrixgenerics-1.14.0-r43hdfd78af_1
bioconductor-mult~ bioconda/linux-64::bioconductor-multtest-2.58.0-r43ha9d7317_0
bioconductor-s4ar~ bioconda/linux-64::bioconductor-s4arrays-1.2.0-r43ha9d7317_1
bioconductor-s4ve~ bioconda/linux-64::bioconductor-s4vectors-0.40.2-r43ha9d7317_1
bioconductor-spar~ bioconda/linux-64::bioconductor-sparsearray-1.2.2-r43ha9d7317_1
bioconductor-summ~ bioconda/noarch::bioconductor-summarizedexperiment-1.32.0-r43hdfd78af_0
bioconductor-xvec~ bioconda/linux-64::bioconductor-xvector-0.42.0-r43ha9d7317_1
bioconductor-zlib~ bioconda/linux-64::bioconductor-zlibbioc-1.48.0-r43ha9d7317_1
bwidget pkgs/main/linux-64::bwidget-1.9.11-1
cairo conda-forge/linux-64::cairo-1.18.0-h3faef2a_0
curl pkgs/main/linux-64::curl-8.5.0-hdbd6064_0
expat pkgs/main/linux-64::expat-2.5.0-h6a678d5_0
font-ttf-dejavu-s~ pkgs/main/noarch::font-ttf-dejavu-sans-mono-2.37-hd3eb1b0_0
font-ttf-inconsol~ pkgs/main/noarch::font-ttf-inconsolata-2.001-hcb22688_0
font-ttf-source-c~ pkgs/main/noarch::font-ttf-source-code-pro-2.030-hd3eb1b0_0
font-ttf-ubuntu pkgs/main/noarch::font-ttf-ubuntu-0.83-h8b1ccd4_0
fontconfig conda-forge/linux-64::fontconfig-2.14.2-h14ed4e7_0
fonts-anaconda pkgs/main/noarch::fonts-anaconda-1-h8fa9717_0
fonts-conda-ecosy~ pkgs/main/noarch::fonts-conda-ecosystem-1-hd3eb1b0_0
freetype pkgs/main/linux-64::freetype-2.12.1-h4a9f257_0
fribidi pkgs/main/linux-64::fribidi-1.0.10-h7b6447c_0
gcc_impl_linux-64 conda-forge/linux-64::gcc_impl_linux-64-13.2.0-h338b0a0_3
gettext conda-forge/linux-64::gettext-0.21.1-h27087fc_0
gfortran_impl_lin~ conda-forge/linux-64::gfortran_impl_linux-64-13.2.0-h76e1118_3
graphite2 pkgs/main/linux-64::graphite2-1.3.14-h295c915_1
gsl pkgs/main/linux-64::gsl-2.7.1-h6e86dc7_1
gxx_impl_linux-64 conda-forge/linux-64::gxx_impl_linux-64-13.2.0-h338b0a0_3
harfbuzz conda-forge/linux-64::harfbuzz-8.3.0-h3d44ed6_0
importlib-metadata pkgs/main/linux-64::importlib-metadata-4.11.3-py311h06a4308_0
importlib_metadata pkgs/main/noarch::importlib_metadata-4.11.3-hd3eb1b0_0
jq pkgs/main/linux-64::jq-1.6-h27cfd23_1000
kernel-headers_li~ conda-forge/noarch::kernel-headers_linux-64-2.6.32-he073ed8_16
lerc conda-forge/linux-64::lerc-4.0.0-h27087fc_0
libblas conda-forge/linux-64::libblas-3.9.0-1_h86c2bf4_netlib
libdeflate conda-forge/linux-64::libdeflate-1.19-hd590300_0
libexpat conda-forge/linux-64::libexpat-2.5.0-hcb278e6_1
libgcc-devel_linu~ conda-forge/noarch::libgcc-devel_linux-64-13.2.0-ha9c7c90_103
libglib conda-forge/linux-64::libglib-2.78.3-h783c2da_0
libgomp conda-forge/linux-64::libgomp-13.2.0-h807b86a_3
libiconv conda-forge/linux-64::libiconv-1.17-hd590300_2
libjpeg-turbo conda-forge/linux-64::libjpeg-turbo-3.0.0-hd590300_1
liblapack conda-forge/linux-64::liblapack-3.9.0-5_h92ddd45_netlib
libnsl conda-forge/linux-64::libnsl-2.0.1-hd590300_0
libpng pkgs/main/linux-64::libpng-1.6.39-h5eee18b_0
libsanitizer conda-forge/linux-64::libsanitizer-13.2.0-h7e041cc_3
libsqlite conda-forge/linux-64::libsqlite-3.44.2-h2797004_0
libstdcxx-devel_l~ conda-forge/noarch::libstdcxx-devel_linux-64-13.2.0-ha9c7c90_103
libtiff conda-forge/linux-64::libtiff-4.6.0-ha9c0a0a_2
libwebp-base pkgs/main/linux-64::libwebp-base-1.3.2-h5eee18b_0
libxcb pkgs/main/linux-64::libxcb-1.15-h7f8727e_0
libxcrypt conda-forge/linux-64::libxcrypt-4.4.36-hd590300_1
libzlib conda-forge/linux-64::libzlib-1.2.13-hd590300_5
make pkgs/main/linux-64::make-4.2.1-h1bed415_1
oniguruma pkgs/main/linux-64::oniguruma-6.9.7.1-h27cfd23_0
pango conda-forge/linux-64::pango-1.50.14-ha41ecd1_2
pixman conda-forge/linux-64::pixman-0.43.0-h59595ed_0
pyyaml pkgs/main/linux-64::pyyaml-6.0.1-py311h5eee18b_0
r-abind pkgs/r/noarch::r-abind-1.4_5-r43h142f84f_0
r-base conda-forge/linux-64::r-base-4.3.2-hb8ee39d_1
r-bh pkgs/r/noarch::r-bh-1.81.0_1-r43h6115d3f_0
r-bitops pkgs/r/linux-64::r-bitops-1.0_7-r43h76d94ec_0
r-codetools pkgs/r/noarch::r-codetools-0.2_19-r43h6115d3f_0
r-cpp11 pkgs/r/noarch::r-cpp11-0.4.6-r43h6115d3f_0
r-crayon pkgs/r/noarch::r-crayon-1.5.2-r43h6115d3f_0
r-deldir pkgs/r/linux-64::r-deldir-1.0_9-r43h640688f_1
r-directlabels pkgs/r/noarch::r-directlabels-2023.8.25-r43h142f84f_0
r-formatr pkgs/r/noarch::r-formatr-1.14-r43h6115d3f_0
r-futile.logger pkgs/r/noarch::r-futile.logger-1.4.3-r43h6115d3f_0
r-futile.options pkgs/r/noarch::r-futile.options-1.0.1-r43h142f84f_0
r-interp pkgs/r/linux-64::r-interp-1.1_4-r43hb5eb8f6_0
r-jpeg pkgs/r/linux-64::r-jpeg-0.1_10-r43h76d94ec_0
r-lambda.r pkgs/r/noarch::r-lambda.r-1.2.4-r43h142f84f_0
r-lattice pkgs/r/linux-64::r-lattice-0.22_5-r43h76d94ec_0
r-latticeextra pkgs/r/noarch::r-latticeextra-0.6_30-r43h6115d3f_0
r-mass pkgs/r/linux-64::r-mass-7.3_60-r43h76d94ec_0
r-matrix pkgs/r/linux-64::r-matrix-1.6_1.1-r43h76d94ec_0
r-matrixstats pkgs/r/linux-64::r-matrixstats-1.0.0-r43h76d94ec_0
r-nada pkgs/r/noarch::r-nada-1.6_1.1-r43h142f84f_0
r-png pkgs/r/linux-64::r-png-0.1_8-r43h76d94ec_0
r-quadprog pkgs/r/linux-64::r-quadprog-1.5_8-r43h640688f_0
r-rcolorbrewer pkgs/r/noarch::r-rcolorbrewer-1.1_3-r43h6115d3f_1
r-rcpp pkgs/r/linux-64::r-rcpp-1.0.11-r43h884c59f_0
r-rcpparmadillo pkgs/r/linux-64::r-rcpparmadillo-0.12.6.4.0-r43h884c59f_0
r-rcppeigen pkgs/r/linux-64::r-rcppeigen-0.3.3.9.3-r43h884c59f_0
r-rcppgsl pkgs/r/linux-64::r-rcppgsl-0.3.13-r43h884c59f_0
r-rcppziggurat pkgs/r/linux-64::r-rcppziggurat-0.1.6-r43h884c59f_0
r-rcurl pkgs/r/linux-64::r-rcurl-1.98_1.12-r43h76d94ec_0
r-rfast pkgs/r/linux-64::r-rfast-2.0.8-r43h884c59f_0
r-snow pkgs/r/noarch::r-snow-0.4_4-r43h142f84f_0
r-survival pkgs/r/linux-64::r-survival-3.5_7-r43h76d94ec_0
r-truncnorm pkgs/r/linux-64::r-truncnorm-1.0_9-r43h76d94ec_0
r-zcompositions pkgs/r/noarch::r-zcompositions-1.4.1-r43h6115d3f_0
sed pkgs/main/linux-64::sed-4.8-h7b6447c_0
sysroot_linux-64 conda-forge/noarch::sysroot_linux-64-2.12-he073ed8_16
tktable pkgs/main/linux-64::tktable-2.10-h14c3975_0
toml pkgs/main/noarch::toml-0.10.2-pyhd3eb1b0_0
xmltodict pkgs/main/linux-64::xmltodict-0.13.0-py311h06a4308_0
xorg-kbproto conda-forge/linux-64::xorg-kbproto-1.0.7-h7f98852_1002
xorg-libice conda-forge/linux-64::xorg-libice-1.1.1-hd590300_0
xorg-libsm conda-forge/linux-64::xorg-libsm-1.2.4-h7391055_0
xorg-libx11 conda-forge/linux-64::xorg-libx11-1.8.7-h8ee46fc_0
xorg-libxext conda-forge/linux-64::xorg-libxext-1.3.4-h0b41bf4_2
xorg-libxrender conda-forge/linux-64::xorg-libxrender-0.9.11-hd590300_0
xorg-libxt conda-forge/linux-64::xorg-libxt-1.3.0-hd590300_1
xorg-renderproto conda-forge/linux-64::xorg-renderproto-0.11.1-h7f98852_1002
xorg-xextproto conda-forge/linux-64::xorg-xextproto-7.3.0-h0b41bf4_1003
xorg-xproto pkgs/main/linux-64::xorg-xproto-7.0.31-h27cfd23_1007
yaml pkgs/main/linux-64::yaml-0.2.5-h7b6447c_0
yq pkgs/main/noarch::yq-2.12.0-pyhd3eb1b0_0
zipp pkgs/main/linux-64::zipp-3.17.0-py311h06a4308_0
The following packages will be UPDATED:
c-ares 1.19.0-h5eee18b_0 --> 1.19.1-h5eee18b_0
ca-certificates conda-forge::ca-certificates-2023.11.~ --> pkgs/main::ca-certificates-2023.12.12-h06a4308_0
icu pkgs/main::icu-58.2-he6710b0_3 --> conda-forge::icu-73.2-h59595ed_0
ld_impl_linux-64 pkgs/main::ld_impl_linux-64-2.38-h118~ --> conda-forge::ld_impl_linux-64-2.40-h41732ed_0
libcurl 8.1.1-h251f7ec_1 --> 8.5.0-h251f7ec_0
libnghttp2 1.52.0-h2d74bed_1 --> 1.57.0-h2d74bed_0
libsolv 0.7.22-he621ea3_0 --> 0.7.24-he621ea3_0
libstdcxx-ng pkgs/main::libstdcxx-ng-11.2.0-h12345~ --> conda-forge::libstdcxx-ng-13.2.0-h7e041cc_3
libuuid pkgs/main::libuuid-1.41.5-h5eee18b_0 --> conda-forge::libuuid-2.38.1-h0b41bf4_0
libxml2 2.10.3-hcbfbd50_0 --> 2.10.4-hf1b16e4_1
pcre2 10.37-he7ceb23_1 --> 10.42-hebb0a14_0
python pkgs/main::python-3.11.4-h955ad1f_0 --> conda-forge::python-3.11.7-hab00c5b_1_cpython
tk pkgs/main::tk-8.6.12-h1ccaba5_0 --> conda-forge::tk-8.6.13-noxft_h4845f30_101
zlib pkgs/main::zlib-1.2.13-h5eee18b_0 --> conda-forge::zlib-1.2.13-hd590300_5
The following packages will be SUPERSEDED by a higher-priority channel:
certifi conda-forge/noarch::certifi-2023.11.1~ --> pkgs/main/linux-64::certifi-2023.11.17-py311h06a4308_0
Proceed ([y]/n)? y
Downloading and Extracting Packages
Preparing transaction: done
Verifying transaction: done
Executing transaction: done
But how do I open the package in qiime2