Happy Sunday Team QIIME,
I was wondering if we can add the taxonomy to the rep-seqs.qza? what we currently have in the rep-seqs is the OTU/Feature ID and the sequence. We have got the taxa in the taxonomy file.
This can be done in the excel though, but I need to generate phylogenetic tree with the taxonomy instead of OTU ID as label.
Is there any way out in QIIME2?
I hope I am able to make my point.
I am afraid, there is no “legal” way to do it in Qiime2.
But, if you really need it, after taxonomy assignment you can modify taxonomy.qza, table.qza and rep-seq.qza files by adding taxonomy information to original hashes (not replacing!) and construct a tree after it.
To do it, you will need to write a custom script.
This command lets you generate what you want but in a .qzv artifact
qiime metadata tabulate
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