Hello there! I'm trying to figure out how to install and run SCNIC but facing my inhability to do it, I feel like a Gordon Ramsay's :sandwich:. Lately I've reproduced errors ranging from the ones previously reported in q2-SCNIC Correlations calculation #error plugin DataFrame to_dense and q2 scnic…

Hi! I collected all above mentioned errors while trying to work with SCNIC or q2-SCNIC. The problem is that 'to_dense' function was deprecated in version 1.0, so you need to downgrade to pandas 0.25 Do not use conda to downgrade since it will mess with dependencies. For me worked: pip install p…

Hey Luis, did you have any issues installing the plugin using these commands: https://library.qiime2.org/plugins/q2-scnic/11/ ?

Hey Kumar, Following the link's commands, installing with pip, in qiime 2021.2 (and other recent qiime2 versions), python 3.6.13, I get the following error: (qiime2-20212) [larteag7@apolo workdir-feb2021] pip install --user scnic Requirement already satisfied: scnic in /home/larteag7/.conda/envs/…

Hi Timur, Sorry for the late answer! It worked, then it failed due to fastspar but after a conda installation (following cmd) conda install -c bioconda -c conda-forge --override-channels fastspar I was finally able to run scnic, Thank you so much, Cheers,

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