Hello I was wondering if you can use qiime2 to analyze 16S-ITS_23S data? or any tips for such analysis is welcome.
Good morning @turbo4xl,
Welcome to the forums! 
Yes, Qiime includes tools for working with amplicons.
Have you seen our tutorials: Tutorials — QIIME 2 2020.2.0 documentation
The Parkinson’s Mouse Tutorial is especially good. 
Colin
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And there is also an ITS-specific tutorial in the community contributions section worth exploring.
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