sample-id Mouse Diet Timepoint Cage Pregnancy status (P/NP) Gestation day Sample type CC05x1 CC5a control 1 2 NP -7 Vaginal swab CC05x2 CC5a control 2 2 NP -4 Vaginal swab CC05x3 CC5a control 3 2 NP -1 Vaginal swab CC05x4 CC5a control 4 2 P 2 Vaginal swab CC05x5 CC5a control 5 2 P 5 Vaginal swab CC05x6 CC5a control 6 2 P 8 Vaginal swab CC05x7 CC5a control 7 2 P 11 Vaginal swab CC05x8 CC5a control 8 2 P 14 Vaginal swab CC05x9 CC5a control 9 2 P ppd7 Vaginal swab CC06x1 CC6a control 1 2 NP -7 Vaginal swab CC06x2 CC6a control 2 2 NP -4 Vaginal swab CC06x3 CC6a control 3 2 NP -1 Vaginal swab CC06x4 CC6a control 4 2 P 2 Vaginal swab CC06x5 CC6a control 5 2 P 5 Vaginal swab CC06x6 CC6a control 6 2 P 8 Vaginal swab CC06x7 CC6a control 7 2 P 11 Vaginal swab CC06x8 CC6a control 8 2 P 14 Vaginal swab CC06x9 CC6a control 9 2 P ppd7 Vaginal swab CC07x1 CC7a control 1 3 NP -7 Vaginal swab CC07x2 CC7a control 2 3 NP -4 Vaginal swab CC07x3 CC7a control 3 3 NP -1 Vaginal swab CC07x4 CC7a control 4 3 P 2 Vaginal swab CC07x5 CC7a control 5 3 P 5 Vaginal swab CC07x6 CC7a control 6 3 P 8 Vaginal swab CC07x7 CC7a control 7 3 P 11 Vaginal swab CC07x8 CC7a control 8 3 P 14 Vaginal swab CC07x9 CC7a control 9 3 P ppd7 Vaginal swab CC11x1 CC11a control 1 4 NP -7 Vaginal swab CC11x2 CC11a control 2 4 NP -4 Vaginal swab CC11x3 CC11a control 3 4 NP -1 Vaginal swab CC11x4 CC11a control 4 4 P 2 Vaginal swab CC11x5 CC11a control 5 4 P 5 Vaginal swab CC11x6 CC11a control 6 4 P 8 Vaginal swab CC11x7 CC11a control 7 4 P 11 Vaginal swab CC11x8 CC11a control 8 4 P 14 Vaginal swab CC11x9 CC11a control 9 4 P ppd7 Vaginal swab CG01x1 CG1a HFHS 1 1 NP -7 Vaginal swab CG01x2 CG1a HFHS 2 1 NP -4 Vaginal swab CG01x3 CG1a HFHS 3 1 NP -1 Vaginal swab CG01x4 CG1a HFHS 4 1 P 2 Vaginal swab CG01x5 CG1a HFHS 5 1 P 5 Vaginal swab CG01x6 CG1a HFHS 6 1 P 8 Vaginal swab CG01x7 CG1a HFHS 7 1 P 11 Vaginal swab CG01x8 CG1a HFHS 8 1 P 14 Vaginal swab CG01x9 CG1a HFHS 9 1 P ppd7 Vaginal swab CG05x1 CG5a HFHS 1 2 NP -7 Vaginal swab CG05x2 CG5a HFHS 2 2 NP -4 Vaginal swab CG05x3 CG5a HFHS 3 2 NP -1 Vaginal swab CG05x4 CG5a HFHS 4 2 P 2 Vaginal swab CG05x5 CG5a HFHS 5 2 P 5 Vaginal swab CG05x6 CG5a HFHS 6 2 P 8 Vaginal swab CG05x7 CG5a HFHS 7 2 P 11 Vaginal swab CG05x8 CG5a HFHS 8 2 P 14 Vaginal swab CG05x9 CG5a HFHS 9 2 P ppd7 Vaginal swab CG06x1 CG6a HFHS 1 2 NP -7 Vaginal swab CG06x2 CG6a HFHS 2 2 NP -4 Vaginal swab CG06x3 CG6a HFHS 3 2 NP -1 Vaginal swab CG06x4 CG6a HFHS 4 2 P 2 Vaginal swab CG06x5 CG6a HFHS 5 2 P 5 Vaginal swab CG06x6 CG6a HFHS 6 2 P 8 Vaginal swab CG06x7 CG6a HFHS 7 2 P 11 Vaginal swab CG06x8 CG6a HFHS 8 2 P 14 Vaginal swab CG06x9 CG6a HFHS 9 2 P ppd7 Vaginal swab CG07x1 CG7a HFHS 1 3 NP -7 Vaginal swab CG07x2 CG7a HFHS 2 3 NP -4 Vaginal swab CG07x3 CG7a HFHS 3 3 NP -1 Vaginal swab CG07x4 CG7a HFHS 4 3 P 2 Vaginal swab CG07x5 CG7a HFHS 5 3 P 5 Vaginal swab CG07x6 CG7a HFHS 6 3 P 8 Vaginal swab CG07x7 CG7a HFHS 7 3 P 11 Vaginal swab CG07x8 CG7a HFHS 8 3 P 14 Vaginal swab CG07x9 CG7a HFHS 9 3 P ppd7 Vaginal swab CG08x1 CG8a HFHS 1 3 NP -7 Vaginal swab CG08x2 CG8a HFHS 2 3 NP -4 Vaginal swab CG08x3 CG8a HFHS 3 3 NP -1 Vaginal swab CG08x4 CG8a HFHS 4 3 P 2 Vaginal swab CG08x5 CG8a HFHS 5 3 P 5 Vaginal swab CG08x6 CG8a HFHS 6 3 P 8 Vaginal swab CG08x7 CG8a HFHS 7 3 P 11 Vaginal swab CG08x8 CG8a HFHS 8 3 P 14 Vaginal swab CG08x9 CG8a HFHS 9 3 P ppd7 Vaginal swab CG09x1 CG9a HFHS 1 3 NP -7 Vaginal swab CG09x2 CG9a HFHS 2 3 NP -4 Vaginal swab CG09x3 CG9a HFHS 3 3 NP -1 Vaginal swab CG09x4 CG9a HFHS 4 3 P 2 Vaginal swab CG09x5 CG9a HFHS 5 3 P 5 Vaginal swab CG09x6 CG9a HFHS 6 3 P 8 Vaginal swab CG09x7 CG9a HFHS 7 3 P 11 Vaginal swab CG09x8 CG9a HFHS 8 3 P 14 Vaginal swab CG09x9 CG9a HFHS 9 3 P ppd7 Vaginal swab CG10x1 CG10a HFHS 1 4 NP -7 Vaginal swab CG10x2 CG10a HFHS 2 4 NP -4 Vaginal swab CG10x3 CG10a HFHS 3 4 NP -1 Vaginal swab CG10x4 CG10a HFHS 4 4 P 2 Vaginal swab CG10x5 CG10a HFHS 5 4 P 5 Vaginal swab CG10x6 CG10a HFHS 6 4 P 8 Vaginal swab CG10x7 CG10a HFHS 7 4 P 11 Vaginal swab CG10x8 CG10a HFHS 8 4 P 14 Vaginal swab CG10x9 CG10a HFHS 9 4 P ppd7 Vaginal swab CG11x1 CG11a HFHS 1 4 NP -7 Vaginal swab CG11x2 CG11a HFHS 2 4 NP -4 Vaginal swab CG11x3 CG11a HFHS 3 4 NP -1 Vaginal swab CG11x4 CG11a HFHS 4 4 P 2 Vaginal swab CG11x5 CG11a HFHS 5 4 P 5 Vaginal swab CG11x6 CG11a HFHS 6 4 P 8 Vaginal swab CG11x7 CG11a HFHS 7 4 P 11 Vaginal swab CG11x8 CG11a HFHS 8 4 P 14 Vaginal swab CG11x9 CG11a HFHS 9 4 P ppd7 Vaginal swab CG12x1 CG12a HFHS 1 4 NP -7 Vaginal swab CG12x2 CG12a HFHS 2 4 NP -4 Vaginal swab CG12x3 CG12a HFHS 3 4 NP -1 Vaginal swab CG12x4 CG12a HFHS 4 4 P 2 Vaginal swab CG12x5 CG12a HFHS 5 4 P 5 Vaginal swab CG12x6 CG12a HFHS 6 4 P 8 Vaginal swab CG12x7 CG12a HFHS 7 4 P 11 Vaginal swab CG12x8 CG12a HFHS 8 4 P 14 Vaginal swab CG12x9 CG12a HFHS 9 4 P ppd7 Vaginal swab CC01x1a CC1b control 1 1 NP -7 Vaginal swab CC02x1a CC2b control 1 1 NP -7 Vaginal swab CC04x1a CC4b control 1 2 NP -7 Vaginal swab CC07x1a CC7b control 1 3 NP -7 Vaginal swab CC09x1a CC9b control 1 3 NP -7 Vaginal swab CC11x1a CC11b control 1 4 NP -7 Vaginal swab CG02x1a CG2b HFHS 1 1 NP -7 Vaginal swab CG05x1a CG5b HFHS 1 2 NP -7 Vaginal swab CG06x1a CG6b HFHS 1 2 NP -7 Vaginal swab CG07x1a CG7b HFHS 1 3 NP -7 Vaginal swab CG08x1a CG8b HFHS 1 3 NP -7 Vaginal swab CG09x1a CG9b HFHS 1 3 NP -7 Vaginal swab CG10x1a CG10b HFHS 1 4 NP -7 Vaginal swab CG11x1a CG11b HFHS 1 4 NP -7 Vaginal swab CG12x1a CG12b HFHS 1 4 NP -7 Vaginal swab CC01x2a CC1b control 2 1 NP -4 Vaginal swab CC02x2a CC2b control 2 1 NP -4 Vaginal swab CC04x2a CC4b control 2 2 NP -4 Vaginal swab CC07x2a CC7b control 2 3 NP -4 Vaginal swab CC09x2a CC9b control 2 3 NP -4 Vaginal swab CC11x2a CC11b control 2 4 NP -4 Vaginal swab CG02x2a CG2b HFHS 2 1 NP -4 Vaginal swab CG05x2a CG5b HFHS 2 2 NP -4 Vaginal swab CG06x2a CG6b HFHS 2 2 NP -4 Vaginal swab CG07x2a CG7b HFHS 2 3 NP -4 Vaginal swab CG08x2a CG8b HFHS 2 3 NP -4 Vaginal swab CG09x2a CG9b HFHS 2 3 NP -4 Vaginal swab CG10x2a CG10b HFHS 2 4 NP -4 Vaginal swab CG11x2a CG11b HFHS 2 4 NP -4 Vaginal swab CG12x2a CG12b HFHS 2 4 NP -4 Vaginal swab CC01x3a CC1b control 3 1 NP -1 Vaginal swab CC02x3a CC2b control 3 1 NP -1 Vaginal swab CC04x3a CC4b control 3 2 NP -1 Vaginal swab CC07x3a CC7b control 3 3 NP -1 Vaginal swab CC09x3a CC9b control 3 3 NP -1 Vaginal swab CC11x3a CC11b control 3 4 NP -1 Vaginal swab CG02x3a CG2b HFHS 3 1 NP -1 Vaginal swab CG05x3a CG5b HFHS 3 2 NP -1 Vaginal swab CG06x3a CG6b HFHS 3 2 NP -1 Vaginal swab CG07x3a CG7b HFHS 3 3 NP -1 Vaginal swab CG08x3a CG8b HFHS 3 3 NP -1 Vaginal swab CG09x3a CG9b HFHS 3 3 NP -1 Vaginal swab CG10x3a CG10b HFHS 3 4 NP -1 Vaginal swab CG11x3a CG11b HFHS 3 4 NP -1 Vaginal swab CG12x3a CG12b HFHS 3 4 NP -1 Vaginal swab CC01x4a CC1b control 4 1 P 2 Vaginal swab CC02x4a CC2b control 4 1 P 2 Vaginal swab CC04x4a CC4b control 4 2 P 2 Vaginal swab CC07x4a CC7b control 4 3 P 2 Vaginal swab CC09x4a CC9b control 4 3 P 2 Vaginal swab CC11x4a CC11b control 4 4 P 2 Vaginal swab CG02x4a CG2b HFHS 4 1 P 2 Vaginal swab CG05x4a CG5b HFHS 4 2 P 2 Vaginal swab CG06x4a CG6b HFHS 4 2 P 2 Vaginal swab CG07x4a CG7b HFHS 4 3 P 2 Vaginal swab CG08x4a CG8b HFHS 4 3 P 2 Vaginal swab CG09x4a CG9b HFHS 4 3 P 2 Vaginal swab CG10x4a CG10b HFHS 4 4 P 2 Vaginal swab CG11x4a CG11b HFHS 4 4 P 2 Vaginal swab CG12x4a CG12b HFHS 4 4 P 2 Vaginal swab CC01x5a CC1b control 5 1 P 5 Vaginal swab CC02x5a CC2b control 5 1 P 5 Vaginal swab CC04x5a CC4b control 5 2 P 5 Vaginal swab CC07x5a CC7b control 5 3 P 5 Vaginal swab CC09x5a CC9b control 5 3 P 5 Vaginal swab CC11x5a CC11b control 5 4 P 5 Vaginal swab CG02x5a CG2b HFHS 5 1 P 5 Vaginal swab CG05x5a CG5b HFHS 5 2 P 5 Vaginal swab CG06x5a CG6b HFHS 5 2 P 5 Vaginal swab CG07x5a CG7b HFHS 5 3 P 5 Vaginal swab CG08x5a CG8b HFHS 5 3 P 5 Vaginal swab CG09x5a CG9b HFHS 5 3 P 5 Vaginal swab CG10x5a CG10b HFHS 5 4 P 5 Vaginal swab CG11x5a CG11b HFHS 5 4 P 5 Vaginal swab CG12x5a CG12b HFHS 5 4 P 5 Vaginal swab CC01x6a CC1b control 6 1 P 8 Vaginal swab CC02x6a CC2b control 6 1 P 8 Vaginal swab CC04x6a CC4b control 6 2 P 8 Vaginal swab CC07x6a CC7b control 6 3 P 8 Vaginal swab CC09x6a CC9b control 6 3 P 8 Vaginal swab CC11x6a CC11b control 6 4 P 8 Vaginal swab CG02x6a CG2b HFHS 6 1 P 8 Vaginal swab CG05x6a CG5b HFHS 6 2 P 8 Vaginal swab CG06x6a CG6b HFHS 6 2 P 8 Vaginal swab CG07x6a CG7b HFHS 6 3 P 8 Vaginal swab CG08x6a CG8b HFHS 6 3 P 8 Vaginal swab CG09x6a CG9b HFHS 6 3 P 8 Vaginal swab CG10x6a CG10b HFHS 6 4 P 8 Vaginal swab CG11x6a CG11b HFHS 6 4 P 8 Vaginal swab CG12x6a CG12b HFHS 6 4 P 8 Vaginal swab CC01x7a CC1b control 7 1 P 11 Vaginal swab CC02x7a CC2b control 7 1 P 11 Vaginal swab CC04x7a CC4b control 7 2 P 11 Vaginal swab CC07x7a CC7b control 7 3 P 11 Vaginal swab CC09x7a CC9b control 7 3 P 11 Vaginal swab CC11x7a CC11b control 7 4 P 11 Vaginal swab CG02x7a CG2b HFHS 7 1 P 11 Vaginal swab CG05x7a CG5b HFHS 7 2 P 11 Vaginal swab CG06x7a CG6b HFHS 7 2 P 11 Vaginal swab CG07x7a CG7b HFHS 7 3 P 11 Vaginal swab CG08x7a CG8b HFHS 7 3 P 11 Vaginal swab CG09x7a CG9b HFHS 7 3 P 11 Vaginal swab CG10x7a CG10b HFHS 7 4 P 11 Vaginal swab CG11x7a CG11b HFHS 7 4 P 11 Vaginal swab CG12x7a CG12b HFHS 7 4 P 11 Vaginal swab CC01x8a CC1b control 8 1 P 14 Vaginal swab CC02x8a CC2b control 8 1 P 14 Vaginal swab CC04x8a CC4b control 8 2 P 14 Vaginal swab CC07x8a CC7b control 8 3 P 14 Vaginal swab CC09x8a CC9b control 8 3 P 14 Vaginal swab CC11x8a CC11b control 8 4 P 14 Vaginal swab CG02x8a CG2b HFHS 8 1 P 14 Vaginal swab CG05x8a CG5b HFHS 8 2 P 14 Vaginal swab CG06x8a CG6b HFHS 8 2 P 14 Vaginal swab CG07x8a CG7b HFHS 8 3 P 14 Vaginal swab CG08x8a CG8b HFHS 8 3 P 14 Vaginal swab CG09x8a CG9b HFHS 8 3 P 14 Vaginal swab CG10x8a CG10b HFHS 8 4 P 14 Vaginal swab CG11x8a CG11b HFHS 8 4 P 14 Vaginal swab CG12x8a CG12b HFHS 8 4 P 14 Vaginal swab