Running external command line application(s). This may print messages to stdout and/or stderr. The command(s) being run are below. These commands cannot be manually re-run as they will depend on temporary files that no longer exist. Command: run_dada_paired.R /home/yuli/TMP_Dir/tmpct7r36uy/forward /home/yuli/TMP_Dir/tmpct7r36uy/reverse /home/yuli/TMP_Dir/tmpct7r36uy/output.tsv.biom /home/yuli/TMP_Dir/tmpct7r36uy/track.tsv /home/yuli/TMP_Dir/tmpct7r36uy/filt_f /home/yuli/TMP_Dir/tmpct7r36uy/filt_r 150 150 13 13 2.0 2 consensus 1.0 1 1000000 R version 3.4.3 (2017-11-30) Error: package ¡®dada2¡¯ was installed by an R version with different internals; it needs to be reinstalled for use with this R version Execution halted Traceback (most recent call last): File "/home/yuli/anaconda3/envs/qiime2-2019.4/lib/python3.6/site-packages/q2_dada2/_denoise.py", line 231, in denoise_paired run_commands([cmd]) File "/home/yuli/anaconda3/envs/qiime2-2019.4/lib/python3.6/site-packages/q2_dada2/_denoise.py", line 36, in run_commands subprocess.run(cmd, check=True) File "/home/yuli/anaconda3/envs/qiime2-2019.4/lib/python3.6/subprocess.py", line 418, in run output=stdout, stderr=stderr) subprocess.CalledProcessError: Command '['run_dada_paired.R', '/home/yuli/TMP_Dir/tmpct7r36uy/forward', '/home/yuli/TMP_Dir/tmpct7r36uy/reverse', '/home/yuli/TMP_Dir/tmpct7r36uy/output.tsv.biom', '/home/yuli/TMP_Dir/tmpct7r36uy/track.tsv', '/home/yuli/TMP_Dir/tmpct7r36uy/filt_f', '/home/yuli/TMP_Dir/tmpct7r36uy/filt_r', '150', '150', '13', '13', '2.0', '2', 'consensus', '1.0', '1', '1000000']' returned non-zero exit status 1. During handling of the above exception, another exception occurred: Traceback (most recent call last): File "/home/yuli/anaconda3/envs/qiime2-2019.4/lib/python3.6/site-packages/q2cli/commands.py", line 311, in __call__ results = action(**arguments) File "", line 2, in denoise_paired File "/home/yuli/anaconda3/envs/qiime2-2019.4/lib/python3.6/site-packages/qiime2/sdk/action.py", line 231, in bound_callable output_types, provenance) File "/home/yuli/anaconda3/envs/qiime2-2019.4/lib/python3.6/site-packages/qiime2/sdk/action.py", line 365, in _callable_executor_ output_views = self._callable(**view_args) File "/home/yuli/anaconda3/envs/qiime2-2019.4/lib/python3.6/site-packages/q2_dada2/_denoise.py", line 246, in denoise_paired " and stderr to learn more." % e.returncode) Exception: An error was encountered while running DADA2 in R (return code 1), please inspect stdout and stderr to learn more.