Logging started at 10:34:28 on 14 Apr 2020 QIIME version: 1.9.1 qiime_config values: blastmat_dir /qiime_software/blast-2.2.22-release/data pick_otus_reference_seqs_fp /usr/local/lib/python2.7/dist-packages/qiime_default_reference/gg_13_8_otus/rep_set/97_otus.fasta sc_queue all.q pynast_template_alignment_fp /usr/local/lib/python2.7/dist-packages/qiime_default_reference/gg_13_8_otus/rep_set_aligned/85_otus.pynast.fasta cluster_jobs_fp start_parallel_jobs.py assign_taxonomy_reference_seqs_fp /usr/local/lib/python2.7/dist-packages/qiime_default_reference/gg_13_8_otus/rep_set/97_otus.fasta torque_queue friendlyq jobs_to_start 1 denoiser_min_per_core 50 assign_taxonomy_id_to_taxonomy_fp /usr/local/lib/python2.7/dist-packages/qiime_default_reference/gg_13_8_otus/taxonomy/97_otu_taxonomy.txt temp_dir /tmp/ blastall_fp /qiime_software/blast-2.2.22-release/bin/blastall seconds_to_sleep 1 parameter file values: parallel:jobs_to_start 1 Input file md5 sums: split_library_output/seqs.fna: 602f6d8383a2b1efca65edfa94a551cb Executing commands. # Pick OTUs command pick_otus.py -i split_library_output/seqs.fna -o otus/uclust_picked_otus Stdout: Stderr: # Pick representative set command pick_rep_set.py -i otus/uclust_picked_otus/seqs_otus.txt -f split_library_output/seqs.fna -l otus/rep_set//seqs_rep_set.log -o otus/rep_set//seqs_rep_set.fasta Stdout: Stderr: # Assign taxonomy command assign_taxonomy.py -o otus/uclust_assigned_taxonomy -i otus/rep_set//seqs_rep_set.fasta *** ERROR RAISED DURING STEP: Assign taxonomy Command run was: assign_taxonomy.py -o otus/uclust_assigned_taxonomy -i otus/rep_set//seqs_rep_set.fasta Command returned exit status: 1 Stdout: Stderr Traceback (most recent call last): File "/usr/local/bin/assign_taxonomy.py", line 417, in main() File "/usr/local/bin/assign_taxonomy.py", line 394, in main log_path=log_path) File "/usr/local/lib/python2.7/dist-packages/qiime/assign_taxonomy.py", line 1304, in __call__ '--uc': uc_path}) File "/usr/local/lib/python2.7/dist-packages/burrito/util.py", line 285, in __call__ 'StdErr:\n%s\n' % open(errfile).read()) burrito.util.ApplicationError: Unacceptable application exit status: 137 Command: cd "/home/qiime/Desktop/Shared_Folder/qiime.test/qiime_overview_tutorial/qiime_overview_tutorial/"; uclust --input "otus/rep_set//seqs_rep_set.fasta" --id 0.9 --rev --maxaccepts 3 --allhits --libonly --lib "/usr/local/lib/python2.7/dist-packages/qiime_default_reference/gg_13_8_otus/rep_set/97_otus.fasta" --uc "/tmp/UclustConsensusTaxonAssigner_cMu0Nu.uc" > "/tmp/tmpfWS3U6RPDm0Z5CKmrO5H.txt" 2> "/tmp/tmpCfMFbVlUCl4yrDMN3uPc.txt" StdOut: StdErr: uclust v1.2.22q (C) Copyright 2009-10 Robert C. Edgar Licensed ONLY for use in PyNAST and QIIME. 00:00 37Mb 0.0% Reading lib, 0 seeds 00:01 218Mb 4.9% Reading lib, 4899 seeds 00:02 457Mb 11.2% Reading lib, 11186 seeds 00:03 568Mb 14.2% Reading lib, 14119 seeds 00:04 723Mb 18.2% Reading lib, 18190 seeds 00:05 863Mb 22.0% Reading lib, 21936 seeds 00:06 1000M 25.6% Reading lib, 25533 seeds 00:07 1.1Gb 27.0% Reading lib, 26958 seeds 00:08 1.1Gb 27.9% Reading lib, 27862 seeds 00:09 1.1Gb 28.5% Reading lib, 28529 seeds 00:10 1.1Gb 29.1% Reading lib, 29105 seeds 00:11 1.2Gb 29.5% Reading lib, 29561 seeds 00:12 1.2Gb 30.0% Reading lib, 30027 seeds 00:13 1.2Gb 30.1% Reading lib, 30142 seeds 00:14 1.2Gb 30.5% Reading lib, 30553 seeds 00:15 1.2Gb 30.9% Reading lib, 30899 seeds 00:16 1.2Gb 31.2% Reading lib, 31169 seeds 00:17 1.2Gb 31.6% Reading lib, 31591 seeds 00:18 1.2Gb 31.8% Reading lib, 31809 seeds 00:19 1.3Gb 32.2% Reading lib, 32193 seeds 00:20 1.3Gb 32.6% Reading lib, 32590 seeds 00:22 1.3Gb 33.3% Reading lib, 33268 seeds 00:24 1.3Gb 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lib, 82893 seeds 05:51 3.2Gb 83.5% Reading lib, 82981 seeds 05:52 3.2Gb 83.5% Reading lib, 83042 seeds 05:53 3.2Gb 83.7% Reading lib, 83207 seeds 05:54 3.2Gb 83.8% Reading lib, 83245 seeds 05:57 3.2Gb 84.1% Reading lib, 83566 seeds Killed Logging stopped at 10:40:37 on 14 Apr 2020