==> sepp-q2-fragment-insertion-err.log <== [19:47:04] exhaustive.py (line 152): INFO: Merging sub-alignments for placement problem : P_6. [19:47:11] jobs.py (line 132): INFO: Finished pplacer Job with input: backbone_alignment_file:/tmp/tmp.y0QZB9kboR/sepp-tempssd-FqaFAmOTSR/q2-fragment-insertion.zor6z50_/root/P_0/pplacer.backbone._scjnv50.fasta, tree_file:/tmp/tmp.y0QZB9kboR/sepp-tempssd-FqaFAmOTSR/q2-fragment-insertion.zor6z50_/root/P_0/pplacer.tree.6i3px4gy.tre, info_file:/tmp/qiime2-archive-t37khu5c/2028ee20-c65b-470e-9cf5-80e2b4e28d0d/data/raxml-info.txt, extended alignment:/tmp/tmp.y0QZB9kboR/sepp-tempssd-FqaFAmOTSR/q2-fragment-insertion.zor6z50_/root/P_0/pplacer.extended.0.qnzpsiad.fasta, output:/tmp/tmp.y0QZB9kboR/sepp-tempssd-FqaFAmOTSR/q2-fragment-insertion.zor6z50_/root/P_0/pplacer.extended.0.qnzpsiad.jplace [19:47:29] jobs.py (line 132): INFO: Finished pplacer Job with input: backbone_alignment_file:/tmp/tmp.y0QZB9kboR/sepp-tempssd-FqaFAmOTSR/q2-fragment-insertion.zor6z50_/root/P_1/pplacer.backbone.gp1dt1_h.fasta, tree_file:/tmp/tmp.y0QZB9kboR/sepp-tempssd-FqaFAmOTSR/q2-fragment-insertion.zor6z50_/root/P_1/pplacer.tree.n5x0buyk.tre, info_file:/tmp/qiime2-archive-t37khu5c/2028ee20-c65b-470e-9cf5-80e2b4e28d0d/data/raxml-info.txt, extended alignment:/tmp/tmp.y0QZB9kboR/sepp-tempssd-FqaFAmOTSR/q2-fragment-insertion.zor6z50_/root/P_1/pplacer.extended.0.dq7wjn5m.fasta, output:/tmp/tmp.y0QZB9kboR/sepp-tempssd-FqaFAmOTSR/q2-fragment-insertion.zor6z50_/root/P_1/pplacer.extended.0.dq7wjn5m.jplace [19:47:35] jobs.py (line 132): INFO: Finished pplacer Job with input: backbone_alignment_file:/tmp/tmp.y0QZB9kboR/sepp-tempssd-FqaFAmOTSR/q2-fragment-insertion.zor6z50_/root/P_2/pplacer.backbone.rmkjg8pt.fasta, tree_file:/tmp/tmp.y0QZB9kboR/sepp-tempssd-FqaFAmOTSR/q2-fragment-insertion.zor6z50_/root/P_2/pplacer.tree.ywq0mhj8.tre, info_file:/tmp/qiime2-archive-t37khu5c/2028ee20-c65b-470e-9cf5-80e2b4e28d0d/data/raxml-info.txt, extended alignment:/tmp/tmp.y0QZB9kboR/sepp-tempssd-FqaFAmOTSR/q2-fragment-insertion.zor6z50_/root/P_2/pplacer.extended.0.a3xxpxo2.fasta, output:/tmp/tmp.y0QZB9kboR/sepp-tempssd-FqaFAmOTSR/q2-fragment-insertion.zor6z50_/root/P_2/pplacer.extended.0.a3xxpxo2.jplace [19:47:50] jobs.py (line 132): INFO: Finished pplacer Job with input: backbone_alignment_file:/tmp/tmp.y0QZB9kboR/sepp-tempssd-FqaFAmOTSR/q2-fragment-insertion.zor6z50_/root/P_3/pplacer.backbone.ssy9nuva.fasta, tree_file:/tmp/tmp.y0QZB9kboR/sepp-tempssd-FqaFAmOTSR/q2-fragment-insertion.zor6z50_/root/P_3/pplacer.tree.rxjok61p.tre, info_file:/tmp/qiime2-archive-t37khu5c/2028ee20-c65b-470e-9cf5-80e2b4e28d0d/data/raxml-info.txt, extended alignment:/tmp/tmp.y0QZB9kboR/sepp-tempssd-FqaFAmOTSR/q2-fragment-insertion.zor6z50_/root/P_3/pplacer.extended.0.83f0d3tt.fasta, output:/tmp/tmp.y0QZB9kboR/sepp-tempssd-FqaFAmOTSR/q2-fragment-insertion.zor6z50_/root/P_3/pplacer.extended.0.83f0d3tt.jplace [19:49:16] jobs.py (line 132): INFO: Finished pplacer Job with input: backbone_alignment_file:/tmp/tmp.y0QZB9kboR/sepp-tempssd-FqaFAmOTSR/q2-fragment-insertion.zor6z50_/root/P_4/pplacer.backbone.9rzrm71x.fasta, tree_file:/tmp/tmp.y0QZB9kboR/sepp-tempssd-FqaFAmOTSR/q2-fragment-insertion.zor6z50_/root/P_4/pplacer.tree.ndlwvge6.tre, info_file:/tmp/qiime2-archive-t37khu5c/2028ee20-c65b-470e-9cf5-80e2b4e28d0d/data/raxml-info.txt, extended alignment:/tmp/tmp.y0QZB9kboR/sepp-tempssd-FqaFAmOTSR/q2-fragment-insertion.zor6z50_/root/P_4/pplacer.extended.0.j75cr1ip.fasta, output:/tmp/tmp.y0QZB9kboR/sepp-tempssd-FqaFAmOTSR/q2-fragment-insertion.zor6z50_/root/P_4/pplacer.extended.0.j75cr1ip.jplace [19:50:03] jobs.py (line 132): INFO: Finished pplacer Job with input: backbone_alignment_file:/tmp/tmp.y0QZB9kboR/sepp-tempssd-FqaFAmOTSR/q2-fragment-insertion.zor6z50_/root/P_5/pplacer.backbone.lr0x2wol.fasta, tree_file:/tmp/tmp.y0QZB9kboR/sepp-tempssd-FqaFAmOTSR/q2-fragment-insertion.zor6z50_/root/P_5/pplacer.tree.nbga1o2x.tre, info_file:/tmp/qiime2-archive-t37khu5c/2028ee20-c65b-470e-9cf5-80e2b4e28d0d/data/raxml-info.txt, extended alignment:/tmp/tmp.y0QZB9kboR/sepp-tempssd-FqaFAmOTSR/q2-fragment-insertion.zor6z50_/root/P_5/pplacer.extended.0.nd57gf_z.fasta, output:/tmp/tmp.y0QZB9kboR/sepp-tempssd-FqaFAmOTSR/q2-fragment-insertion.zor6z50_/root/P_5/pplacer.extended.0.nd57gf_z.jplace [19:50:11] jobs.py (line 132): INFO: Finished jsonmerger Job with input: input:pipe output:/tmp/tmp.y0QZB9kboR/sepp-tmp-9VTD4VvtQS/q2-fragment-insertion_placement.json [19:50:11] algorithm.py (line 196): INFO: Current execution Finished in 343 seconds [19:50:11] algorithm.py (line 199): INFO: All checkpointed executions Finished in 343 cumulative time ==> sepp-q2-fragment-insertion-out.log <== output files are at q2-fragment-insertion_placement.json q2-fragment-insertion_placement.tog.relabelled.tre q2-fragment-insertion_placement.tog.relabelled.xml q2-fragment-insertion_placement.tog.tre q2-fragment-insertion_placement.tog.xml and more files are at /tmp/tmp.y0QZB9kboR/sepp-tmp-9VTD4VvtQS . Consider removing /tmp/tmp.y0QZB9kboR/sepp-tmp-9VTD4VvtQS if its files are not needed. Removing /tmp/tmp.y0QZB9kboR/sepp-tmp-9VTD4VvtQS Traceback (most recent call last): File "/home/utad/msiddiq7/.conda/envs/qiime2-2019.10/lib/python3.6/site-packages/q2cli/commands.py", line 328, in __call__ results = action(**arguments) File "", line 2, in sepp File "/home/utad/msiddiq7/.conda/envs/qiime2-2019.10/lib/python3.6/site-packages/qiime2/sdk/action.py", line 240, in bound_callable output_types, provenance) File "/home/utad/msiddiq7/.conda/envs/qiime2-2019.10/lib/python3.6/site-packages/qiime2/sdk/action.py", line 411, in _callable_executor_ spec.qiime_type, output_view, spec.view_type, prov) File "/home/utad/msiddiq7/.conda/envs/qiime2-2019.10/lib/python3.6/site-packages/qiime2/sdk/result.py", line 273, in _from_view provenance_capture=provenance_capture) File "/home/utad/msiddiq7/.conda/envs/qiime2-2019.10/lib/python3.6/site-packages/qiime2/core/archive/archiver.py", line 316, in from_data Format.write(rec, type, format, data_initializer, provenance_capture) File "/home/utad/msiddiq7/.conda/envs/qiime2-2019.10/lib/python3.6/site-packages/qiime2/core/archive/format/v5.py", line 21, in write provenance_capture) File "/home/utad/msiddiq7/.conda/envs/qiime2-2019.10/lib/python3.6/site-packages/qiime2/core/archive/format/v1.py", line 26, in write prov_dir, [root / cls.METADATA_FILE, archive_record.version_fp]) File "/home/utad/msiddiq7/.conda/envs/qiime2-2019.10/lib/python3.6/site-packages/qiime2/core/archive/provenance.py", line 312, in finalize self.write_action_yaml() File "/home/utad/msiddiq7/.conda/envs/qiime2-2019.10/lib/python3.6/site-packages/qiime2/core/archive/provenance.py", line 289, in write_action_yaml fh.write(yaml.dump({'execution': self.make_execution_section()}, File "/home/utad/msiddiq7/.conda/envs/qiime2-2019.10/lib/python3.6/site-packages/qiime2/core/archive/provenance.py", line 255, in make_execution_section runtime['start'] = start = self._ts_to_date(self.start) File "/home/utad/msiddiq7/.conda/envs/qiime2-2019.10/lib/python3.6/site-packages/qiime2/core/archive/provenance.py", line 249, in _ts_to_date return datetime.fromtimestamp(ts, tzlocal.get_localzone()) File "/home/utad/msiddiq7/.conda/envs/qiime2-2019.10/lib/python3.6/site-packages/tzlocal/unix.py", line 165, in get_localzone _cache_tz = _get_localzone() File "/home/utad/msiddiq7/.conda/envs/qiime2-2019.10/lib/python3.6/site-packages/tzlocal/unix.py", line 90, in _get_localzone utils.assert_tz_offset(tz) File "/home/utad/msiddiq7/.conda/envs/qiime2-2019.10/lib/python3.6/site-packages/tzlocal/utils.py", line 38, in assert_tz_offset raise ValueError(msg) ValueError: Timezone offset does not match system offset: 0 != -14400. Please, check your config files.