==> sepp-q2-fragment-insertion-err.log <== [22:45:55] jobs.py (line 132): INFO: Finished pplacer Job with input: backbone_alignment_file:/tmp/tmp.sgpMTpqWfc/sepp-tempssd-EMh90CMjsi/q2-fragment-insertion.2vxxvkak/root/P_0/pplacer.backbone.stmbrs52.fasta, tree_file:/tmp/tmp.sgpMTpqWfc/sepp-tempssd-EMh90CMjsi/q2-fragment-insertion.2vxxvkak/root/P_0/pplacer.tree.thqkdfud.tre, info_file:/tmp/qiime2-archive-2sca_s9n/2028ee20-c65b-470e-9cf5-80e2b4e28d0d/data/raxml-info.txt, extended alignment:/tmp/tmp.sgpMTpqWfc/sepp-tempssd-EMh90CMjsi/q2-fragment-insertion.2vxxvkak/root/P_0/pplacer.extended.0.wycijcgs.fasta, output:/tmp/tmp.sgpMTpqWfc/sepp-tempssd-EMh90CMjsi/q2-fragment-insertion.2vxxvkak/root/P_0/pplacer.extended.0.wycijcgs.jplace [22:46:03] jobs.py (line 132): INFO: Finished pplacer Job with input: backbone_alignment_file:/tmp/tmp.sgpMTpqWfc/sepp-tempssd-EMh90CMjsi/q2-fragment-insertion.2vxxvkak/root/P_1/pplacer.backbone.j8ehaiqq.fasta, tree_file:/tmp/tmp.sgpMTpqWfc/sepp-tempssd-EMh90CMjsi/q2-fragment-insertion.2vxxvkak/root/P_1/pplacer.tree.ht4ge_ca.tre, info_file:/tmp/qiime2-archive-2sca_s9n/2028ee20-c65b-470e-9cf5-80e2b4e28d0d/data/raxml-info.txt, extended alignment:/tmp/tmp.sgpMTpqWfc/sepp-tempssd-EMh90CMjsi/q2-fragment-insertion.2vxxvkak/root/P_1/pplacer.extended.0._bmshwdn.fasta, output:/tmp/tmp.sgpMTpqWfc/sepp-tempssd-EMh90CMjsi/q2-fragment-insertion.2vxxvkak/root/P_1/pplacer.extended.0._bmshwdn.jplace [22:46:11] jobs.py (line 132): INFO: Finished pplacer Job with input: backbone_alignment_file:/tmp/tmp.sgpMTpqWfc/sepp-tempssd-EMh90CMjsi/q2-fragment-insertion.2vxxvkak/root/P_2/pplacer.backbone.0k1z1n_p.fasta, tree_file:/tmp/tmp.sgpMTpqWfc/sepp-tempssd-EMh90CMjsi/q2-fragment-insertion.2vxxvkak/root/P_2/pplacer.tree.qb18l2rm.tre, info_file:/tmp/qiime2-archive-2sca_s9n/2028ee20-c65b-470e-9cf5-80e2b4e28d0d/data/raxml-info.txt, extended alignment:/tmp/tmp.sgpMTpqWfc/sepp-tempssd-EMh90CMjsi/q2-fragment-insertion.2vxxvkak/root/P_2/pplacer.extended.0.2ihzu6kv.fasta, output:/tmp/tmp.sgpMTpqWfc/sepp-tempssd-EMh90CMjsi/q2-fragment-insertion.2vxxvkak/root/P_2/pplacer.extended.0.2ihzu6kv.jplace [22:46:34] jobs.py (line 132): INFO: Finished pplacer Job with input: backbone_alignment_file:/tmp/tmp.sgpMTpqWfc/sepp-tempssd-EMh90CMjsi/q2-fragment-insertion.2vxxvkak/root/P_3/pplacer.backbone.80oc4yu9.fasta, tree_file:/tmp/tmp.sgpMTpqWfc/sepp-tempssd-EMh90CMjsi/q2-fragment-insertion.2vxxvkak/root/P_3/pplacer.tree.3s7jrlos.tre, info_file:/tmp/qiime2-archive-2sca_s9n/2028ee20-c65b-470e-9cf5-80e2b4e28d0d/data/raxml-info.txt, extended alignment:/tmp/tmp.sgpMTpqWfc/sepp-tempssd-EMh90CMjsi/q2-fragment-insertion.2vxxvkak/root/P_3/pplacer.extended.0.3xqt0iye.fasta, output:/tmp/tmp.sgpMTpqWfc/sepp-tempssd-EMh90CMjsi/q2-fragment-insertion.2vxxvkak/root/P_3/pplacer.extended.0.3xqt0iye.jplace [22:47:16] jobs.py (line 132): INFO: Finished pplacer Job with input: backbone_alignment_file:/tmp/tmp.sgpMTpqWfc/sepp-tempssd-EMh90CMjsi/q2-fragment-insertion.2vxxvkak/root/P_4/pplacer.backbone.59gegg95.fasta, tree_file:/tmp/tmp.sgpMTpqWfc/sepp-tempssd-EMh90CMjsi/q2-fragment-insertion.2vxxvkak/root/P_4/pplacer.tree.0nrngtvi.tre, info_file:/tmp/qiime2-archive-2sca_s9n/2028ee20-c65b-470e-9cf5-80e2b4e28d0d/data/raxml-info.txt, extended alignment:/tmp/tmp.sgpMTpqWfc/sepp-tempssd-EMh90CMjsi/q2-fragment-insertion.2vxxvkak/root/P_4/pplacer.extended.0.ghwyei4f.fasta, output:/tmp/tmp.sgpMTpqWfc/sepp-tempssd-EMh90CMjsi/q2-fragment-insertion.2vxxvkak/root/P_4/pplacer.extended.0.ghwyei4f.jplace [22:47:31] jobs.py (line 132): INFO: Finished pplacer Job with input: backbone_alignment_file:/tmp/tmp.sgpMTpqWfc/sepp-tempssd-EMh90CMjsi/q2-fragment-insertion.2vxxvkak/root/P_5/pplacer.backbone.0tby5m31.fasta, tree_file:/tmp/tmp.sgpMTpqWfc/sepp-tempssd-EMh90CMjsi/q2-fragment-insertion.2vxxvkak/root/P_5/pplacer.tree.pu00ksgs.tre, info_file:/tmp/qiime2-archive-2sca_s9n/2028ee20-c65b-470e-9cf5-80e2b4e28d0d/data/raxml-info.txt, extended alignment:/tmp/tmp.sgpMTpqWfc/sepp-tempssd-EMh90CMjsi/q2-fragment-insertion.2vxxvkak/root/P_5/pplacer.extended.0.m40hvpd6.fasta, output:/tmp/tmp.sgpMTpqWfc/sepp-tempssd-EMh90CMjsi/q2-fragment-insertion.2vxxvkak/root/P_5/pplacer.extended.0.m40hvpd6.jplace [22:47:48] jobs.py (line 132): INFO: Finished pplacer Job with input: backbone_alignment_file:/tmp/tmp.sgpMTpqWfc/sepp-tempssd-EMh90CMjsi/q2-fragment-insertion.2vxxvkak/root/P_6/pplacer.backbone.j4y16rqp.fasta, tree_file:/tmp/tmp.sgpMTpqWfc/sepp-tempssd-EMh90CMjsi/q2-fragment-insertion.2vxxvkak/root/P_6/pplacer.tree.q8eyoevh.tre, info_file:/tmp/qiime2-archive-2sca_s9n/2028ee20-c65b-470e-9cf5-80e2b4e28d0d/data/raxml-info.txt, extended alignment:/tmp/tmp.sgpMTpqWfc/sepp-tempssd-EMh90CMjsi/q2-fragment-insertion.2vxxvkak/root/P_6/pplacer.extended.0.pcx9n1wr.fasta, output:/tmp/tmp.sgpMTpqWfc/sepp-tempssd-EMh90CMjsi/q2-fragment-insertion.2vxxvkak/root/P_6/pplacer.extended.0.pcx9n1wr.jplace [22:47:58] jobs.py (line 132): INFO: Finished jsonmerger Job with input: input:pipe output:/tmp/tmp.sgpMTpqWfc/sepp-tmp-83MQ9Ll0is/q2-fragment-insertion_placement.json [22:47:58] algorithm.py (line 196): INFO: Current execution Finished in 355 seconds [22:47:58] algorithm.py (line 199): INFO: All checkpointed executions Finished in 355 cumulative time ==> sepp-q2-fragment-insertion-out.log <== output files are at q2-fragment-insertion_placement.json q2-fragment-insertion_placement.tog.relabelled.tre q2-fragment-insertion_placement.tog.relabelled.xml q2-fragment-insertion_placement.tog.tre q2-fragment-insertion_placement.tog.xml and more files are at /tmp/tmp.sgpMTpqWfc/sepp-tmp-83MQ9Ll0is . Consider removing /tmp/tmp.sgpMTpqWfc/sepp-tmp-83MQ9Ll0is if its files are not needed. Removing /tmp/tmp.sgpMTpqWfc/sepp-tmp-83MQ9Ll0is Traceback (most recent call last): File "/home/utad/msiddiq7/.conda/envs/qiime2-2019.10/lib/python3.6/site-packages/q2cli/commands.py", line 328, in __call__ results = action(**arguments) File "", line 2, in sepp File "/home/utad/msiddiq7/.conda/envs/qiime2-2019.10/lib/python3.6/site-packages/qiime2/sdk/action.py", line 240, in bound_callable output_types, provenance) File "/home/utad/msiddiq7/.conda/envs/qiime2-2019.10/lib/python3.6/site-packages/qiime2/sdk/action.py", line 411, in _callable_executor_ spec.qiime_type, output_view, spec.view_type, prov) File "/home/utad/msiddiq7/.conda/envs/qiime2-2019.10/lib/python3.6/site-packages/qiime2/sdk/result.py", line 273, in _from_view provenance_capture=provenance_capture) File "/home/utad/msiddiq7/.conda/envs/qiime2-2019.10/lib/python3.6/site-packages/qiime2/core/archive/archiver.py", line 316, in from_data Format.write(rec, type, format, data_initializer, provenance_capture) File "/home/utad/msiddiq7/.conda/envs/qiime2-2019.10/lib/python3.6/site-packages/qiime2/core/archive/format/v5.py", line 21, in write provenance_capture) File "/home/utad/msiddiq7/.conda/envs/qiime2-2019.10/lib/python3.6/site-packages/qiime2/core/archive/format/v1.py", line 26, in write prov_dir, [root / cls.METADATA_FILE, archive_record.version_fp]) File "/home/utad/msiddiq7/.conda/envs/qiime2-2019.10/lib/python3.6/site-packages/qiime2/core/archive/provenance.py", line 312, in finalize self.write_action_yaml() File "/home/utad/msiddiq7/.conda/envs/qiime2-2019.10/lib/python3.6/site-packages/qiime2/core/archive/provenance.py", line 289, in write_action_yaml fh.write(yaml.dump({'execution': self.make_execution_section()}, File "/home/utad/msiddiq7/.conda/envs/qiime2-2019.10/lib/python3.6/site-packages/qiime2/core/archive/provenance.py", line 255, in make_execution_section runtime['start'] = start = self._ts_to_date(self.start) File "/home/utad/msiddiq7/.conda/envs/qiime2-2019.10/lib/python3.6/site-packages/qiime2/core/archive/provenance.py", line 249, in _ts_to_date return datetime.fromtimestamp(ts, tzlocal.get_localzone()) File "/home/utad/msiddiq7/.conda/envs/qiime2-2019.10/lib/python3.6/site-packages/tzlocal/unix.py", line 165, in get_localzone _cache_tz = _get_localzone() File "/home/utad/msiddiq7/.conda/envs/qiime2-2019.10/lib/python3.6/site-packages/tzlocal/unix.py", line 90, in _get_localzone utils.assert_tz_offset(tz) File "/home/utad/msiddiq7/.conda/envs/qiime2-2019.10/lib/python3.6/site-packages/tzlocal/utils.py", line 38, in assert_tz_offset raise ValueError(msg) ValueError: Timezone offset does not match system offset: -18000 != 0. Please, check your config files.