[18:44:07] alignment.py (line 615): DEBUG: Relabeling 1955 (1955) with 1955 labels. [18:44:07] exhaustive.py (line 182): DEBUG: Merging alignment subset into placement subset for chunk 1: A_98_3. [18:44:07] alignment.py (line 727): DEBUG: Merging started ... [18:44:07] alignment.py (line 834): DEBUG: Merging finished ... [18:44:07] problem.py (line 246): DEBUG: Reading /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_98/A_98_4/hmmbuild.input.nwd4ko55.fasta [] and relabeling it based on 1905 orig column labels. [18:44:07] alignment.py (line 543): DEBUG: Reading base alignment: /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_98/A_98_4/hmmbuild.input.nwd4ko55.fasta. [18:44:07] alignment.py (line 615): DEBUG: Relabeling 1905 (1905) with 1905 labels. [18:44:07] exhaustive.py (line 182): DEBUG: Merging alignment subset into placement subset for chunk 1: A_98_4. [18:44:07] alignment.py (line 727): DEBUG: Merging started ... [18:44:07] alignment.py (line 834): DEBUG: Merging finished ... [18:44:07] problem.py (line 246): DEBUG: Reading /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_98/A_98_5/hmmbuild.input.w_xunvkh.fasta [] and relabeling it based on 1927 orig column labels. [18:44:07] alignment.py (line 543): DEBUG: Reading base alignment: /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_98/A_98_5/hmmbuild.input.w_xunvkh.fasta. [18:44:07] alignment.py (line 615): DEBUG: Relabeling 1927 (1927) with 1927 labels. [18:44:07] exhaustive.py (line 182): DEBUG: Merging alignment subset into placement subset for chunk 1: A_98_5. [18:44:07] alignment.py (line 727): DEBUG: Merging started ... [18:44:07] alignment.py (line 834): DEBUG: Merging finished ... [18:44:07] problem.py (line 246): DEBUG: Reading /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_98/A_98_6/hmmbuild.input.c8bj6zbx.fasta [] and relabeling it based on 1939 orig column labels. [18:44:07] alignment.py (line 543): DEBUG: Reading base alignment: /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_98/A_98_6/hmmbuild.input.c8bj6zbx.fasta. [18:44:07] alignment.py (line 615): DEBUG: Relabeling 1939 (1939) with 1939 labels. [18:44:07] exhaustive.py (line 182): DEBUG: Merging alignment subset into placement subset for chunk 1: A_98_6. [18:44:07] alignment.py (line 727): DEBUG: Merging started ... [18:44:07] alignment.py (line 834): DEBUG: Merging finished ... [18:44:07] problem.py (line 246): DEBUG: Reading /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_98/A_98_7/hmmbuild.input.31iuyqjm.fasta [] and relabeling it based on 2072 orig column labels. [18:44:07] alignment.py (line 543): DEBUG: Reading base alignment: /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_98/A_98_7/hmmbuild.input.31iuyqjm.fasta. [18:44:07] alignment.py (line 615): DEBUG: Relabeling 2072 (2072) with 2072 labels. [18:44:07] exhaustive.py (line 182): DEBUG: Merging alignment subset into placement subset for chunk 1: A_98_7. [18:44:07] alignment.py (line 727): DEBUG: Merging started ... [18:44:07] alignment.py (line 834): DEBUG: Merging finished ... [18:44:07] problem.py (line 246): DEBUG: Reading /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_98/A_98_0/hmmbuild.input.rnxhv0xp.fasta [] and relabeling it based on 1913 orig column labels. [18:44:07] alignment.py (line 543): DEBUG: Reading base alignment: /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_98/A_98_0/hmmbuild.input.rnxhv0xp.fasta. [18:44:07] alignment.py (line 615): DEBUG: Relabeling 1913 (1913) with 1913 labels. [18:44:07] exhaustive.py (line 182): DEBUG: Merging alignment subset into placement subset for chunk 2: A_98_0. [18:44:07] alignment.py (line 727): DEBUG: Merging started ... [18:44:07] alignment.py (line 834): DEBUG: Merging finished ... [18:44:07] problem.py (line 246): DEBUG: Reading /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_98/A_98_1/hmmbuild.input.padtu4pw.fasta [] and relabeling it based on 1962 orig column labels. [18:44:07] alignment.py (line 543): DEBUG: Reading base alignment: /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_98/A_98_1/hmmbuild.input.padtu4pw.fasta. [18:44:07] alignment.py (line 615): DEBUG: Relabeling 1962 (1962) with 1962 labels. [18:44:07] exhaustive.py (line 182): DEBUG: Merging alignment subset into placement subset for chunk 2: A_98_1. [18:44:07] alignment.py (line 727): DEBUG: Merging started ... [18:44:07] alignment.py (line 834): DEBUG: Merging finished ... [18:44:07] problem.py (line 246): DEBUG: Reading /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_98/A_98_2/hmmbuild.input.ntdezcbm.fasta [] and relabeling it based on 1901 orig column labels. [18:44:07] alignment.py (line 543): DEBUG: Reading base alignment: /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_98/A_98_2/hmmbuild.input.ntdezcbm.fasta. [18:44:07] alignment.py (line 615): DEBUG: Relabeling 1901 (1901) with 1901 labels. [18:44:07] exhaustive.py (line 182): DEBUG: Merging alignment subset into placement subset for chunk 2: A_98_2. [18:44:07] alignment.py (line 727): DEBUG: Merging started ... [18:44:07] alignment.py (line 834): DEBUG: Merging finished ... [18:44:07] problem.py (line 246): DEBUG: Reading /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_98/A_98_3/hmmbuild.input.m8ti6w5z.fasta [] and relabeling it based on 1955 orig column labels. [18:44:07] alignment.py (line 543): DEBUG: Reading base alignment: /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_98/A_98_3/hmmbuild.input.m8ti6w5z.fasta. [18:44:07] alignment.py (line 615): DEBUG: Relabeling 1955 (1955) with 1955 labels. [18:44:07] exhaustive.py (line 182): DEBUG: Merging alignment subset into placement subset for chunk 2: A_98_3. [18:44:07] alignment.py (line 727): DEBUG: Merging started ... [18:44:07] alignment.py (line 834): DEBUG: Merging finished ... [18:44:07] problem.py (line 246): DEBUG: Reading /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_98/A_98_4/hmmbuild.input.nwd4ko55.fasta [] and relabeling it based on 1905 orig column labels. [18:44:07] alignment.py (line 543): DEBUG: Reading base alignment: /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_98/A_98_4/hmmbuild.input.nwd4ko55.fasta. [18:44:07] alignment.py (line 615): DEBUG: Relabeling 1905 (1905) with 1905 labels. [18:44:07] exhaustive.py (line 182): DEBUG: Merging alignment subset into placement subset for chunk 2: A_98_4. [18:44:07] alignment.py (line 727): DEBUG: Merging started ... [18:44:07] alignment.py (line 834): DEBUG: Merging finished ... [18:44:07] problem.py (line 246): DEBUG: Reading /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_98/A_98_5/hmmbuild.input.w_xunvkh.fasta [] and relabeling it based on 1927 orig column labels. [18:44:07] alignment.py (line 543): DEBUG: Reading base alignment: /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_98/A_98_5/hmmbuild.input.w_xunvkh.fasta. [18:44:07] alignment.py (line 615): DEBUG: Relabeling 1927 (1927) with 1927 labels. [18:44:07] exhaustive.py (line 182): DEBUG: Merging alignment subset into placement subset for chunk 2: A_98_5. [18:44:07] alignment.py (line 727): DEBUG: Merging started ... [18:44:07] alignment.py (line 834): DEBUG: Merging finished ... [18:44:07] problem.py (line 246): DEBUG: Reading /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_98/A_98_6/hmmbuild.input.c8bj6zbx.fasta [] and relabeling it based on 1939 orig column labels. [18:44:07] alignment.py (line 543): DEBUG: Reading base alignment: /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_98/A_98_6/hmmbuild.input.c8bj6zbx.fasta. [18:44:07] alignment.py (line 615): DEBUG: Relabeling 1939 (1939) with 1939 labels. [18:44:07] exhaustive.py (line 182): DEBUG: Merging alignment subset into placement subset for chunk 2: A_98_6. [18:44:07] alignment.py (line 727): DEBUG: Merging started ... [18:44:07] alignment.py (line 834): DEBUG: Merging finished ... [18:44:07] problem.py (line 246): DEBUG: Reading /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_98/A_98_7/hmmbuild.input.31iuyqjm.fasta [] and relabeling it based on 2072 orig column labels. [18:44:07] alignment.py (line 543): DEBUG: Reading base alignment: /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_98/A_98_7/hmmbuild.input.31iuyqjm.fasta. [18:44:07] alignment.py (line 615): DEBUG: Relabeling 2072 (2072) with 2072 labels. [18:44:07] exhaustive.py (line 182): DEBUG: Merging alignment subset into placement subset for chunk 2: A_98_7. [18:44:07] alignment.py (line 727): DEBUG: Merging started ... [18:44:07] alignment.py (line 834): DEBUG: Merging finished ... [18:44:07] problem.py (line 246): DEBUG: Reading /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_98/A_98_0/hmmbuild.input.rnxhv0xp.fasta [] and relabeling it based on 1913 orig column labels. [18:44:07] alignment.py (line 543): DEBUG: Reading base alignment: /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_98/A_98_0/hmmbuild.input.rnxhv0xp.fasta. [18:44:07] alignment.py (line 615): DEBUG: Relabeling 1913 (1913) with 1913 labels. [18:44:07] exhaustive.py (line 182): DEBUG: Merging alignment subset into placement subset for chunk 3: A_98_0. [18:44:07] alignment.py (line 727): DEBUG: Merging started ... [18:44:07] alignment.py (line 834): DEBUG: Merging finished ... [18:44:07] problem.py (line 246): DEBUG: Reading /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_98/A_98_1/hmmbuild.input.padtu4pw.fasta [] and relabeling it based on 1962 orig column labels. [18:44:07] alignment.py (line 543): DEBUG: Reading base alignment: /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_98/A_98_1/hmmbuild.input.padtu4pw.fasta. [18:44:07] alignment.py (line 615): DEBUG: Relabeling 1962 (1962) with 1962 labels. [18:44:07] exhaustive.py (line 182): DEBUG: Merging alignment subset into placement subset for chunk 3: A_98_1. [18:44:07] alignment.py (line 727): DEBUG: Merging started ... [18:44:07] alignment.py (line 834): DEBUG: Merging finished ... [18:44:07] problem.py (line 246): DEBUG: Reading /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_98/A_98_2/hmmbuild.input.ntdezcbm.fasta [] and relabeling it based on 1901 orig column labels. [18:44:07] alignment.py (line 543): DEBUG: Reading base alignment: /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_98/A_98_2/hmmbuild.input.ntdezcbm.fasta. [18:44:07] alignment.py (line 615): DEBUG: Relabeling 1901 (1901) with 1901 labels. [18:44:07] exhaustive.py (line 182): DEBUG: Merging alignment subset into placement subset for chunk 3: A_98_2. [18:44:07] alignment.py (line 727): DEBUG: Merging started ... [18:44:07] alignment.py (line 834): DEBUG: Merging finished ... [18:44:07] problem.py (line 246): DEBUG: Reading /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_98/A_98_3/hmmbuild.input.m8ti6w5z.fasta [] and relabeling it based on 1955 orig column labels. [18:44:07] alignment.py (line 543): DEBUG: Reading base alignment: /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_98/A_98_3/hmmbuild.input.m8ti6w5z.fasta. [18:44:07] alignment.py (line 615): DEBUG: Relabeling 1955 (1955) with 1955 labels. [18:44:07] exhaustive.py (line 182): DEBUG: Merging alignment subset into placement subset for chunk 3: A_98_3. [18:44:07] alignment.py (line 727): DEBUG: Merging started ... [18:44:07] alignment.py (line 834): DEBUG: Merging finished ... [18:44:07] problem.py (line 246): DEBUG: Reading /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_98/A_98_4/hmmbuild.input.nwd4ko55.fasta [] and relabeling it based on 1905 orig column labels. [18:44:07] alignment.py (line 543): DEBUG: Reading base alignment: /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_98/A_98_4/hmmbuild.input.nwd4ko55.fasta. [18:44:07] alignment.py (line 615): DEBUG: Relabeling 1905 (1905) with 1905 labels. [18:44:07] exhaustive.py (line 182): DEBUG: Merging alignment subset into placement subset for chunk 3: A_98_4. [18:44:07] alignment.py (line 727): DEBUG: Merging started ... [18:44:07] alignment.py (line 834): DEBUG: Merging finished ... [18:44:07] problem.py (line 246): DEBUG: Reading /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_98/A_98_5/hmmbuild.input.w_xunvkh.fasta [] and relabeling it based on 1927 orig column labels. [18:44:07] alignment.py (line 543): DEBUG: Reading base alignment: /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_98/A_98_5/hmmbuild.input.w_xunvkh.fasta. [18:44:07] alignment.py (line 615): DEBUG: Relabeling 1927 (1927) with 1927 labels. [18:44:07] exhaustive.py (line 182): DEBUG: Merging alignment subset into placement subset for chunk 3: A_98_5. [18:44:07] alignment.py (line 727): DEBUG: Merging started ... [18:44:07] alignment.py (line 834): DEBUG: Merging finished ... [18:44:07] problem.py (line 246): DEBUG: Reading /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_98/A_98_6/hmmbuild.input.c8bj6zbx.fasta [] and relabeling it based on 1939 orig column labels. [18:44:07] alignment.py (line 543): DEBUG: Reading base alignment: /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_98/A_98_6/hmmbuild.input.c8bj6zbx.fasta. [18:44:07] alignment.py (line 615): DEBUG: Relabeling 1939 (1939) with 1939 labels. [18:44:07] exhaustive.py (line 182): DEBUG: Merging alignment subset into placement subset for chunk 3: A_98_6. [18:44:07] alignment.py (line 727): DEBUG: Merging started ... [18:44:07] alignment.py (line 834): DEBUG: Merging finished ... [18:44:07] problem.py (line 246): DEBUG: Reading /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_98/A_98_7/hmmbuild.input.31iuyqjm.fasta [] and relabeling it based on 2072 orig column labels. [18:44:07] alignment.py (line 543): DEBUG: Reading base alignment: /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_98/A_98_7/hmmbuild.input.31iuyqjm.fasta. [18:44:07] alignment.py (line 615): DEBUG: Relabeling 2072 (2072) with 2072 labels. [18:44:07] exhaustive.py (line 182): DEBUG: Merging alignment subset into placement subset for chunk 3: A_98_7. [18:44:07] alignment.py (line 727): DEBUG: Merging started ... [18:44:07] alignment.py (line 834): DEBUG: Merging finished ... [18:44:07] problem.py (line 246): DEBUG: Reading /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_98/A_98_0/hmmbuild.input.rnxhv0xp.fasta [] and relabeling it based on 1913 orig column labels. [18:44:07] alignment.py (line 543): DEBUG: Reading base alignment: /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_98/A_98_0/hmmbuild.input.rnxhv0xp.fasta. [18:44:07] alignment.py (line 615): DEBUG: Relabeling 1913 (1913) with 1913 labels. [18:44:07] exhaustive.py (line 182): DEBUG: Merging alignment subset into placement subset for chunk 4: A_98_0. [18:44:07] alignment.py (line 727): DEBUG: Merging started ... [18:44:07] alignment.py (line 834): DEBUG: Merging finished ... [18:44:07] problem.py (line 246): DEBUG: Reading /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_98/A_98_1/hmmbuild.input.padtu4pw.fasta [] and relabeling it based on 1962 orig column labels. [18:44:07] alignment.py (line 543): DEBUG: Reading base alignment: /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_98/A_98_1/hmmbuild.input.padtu4pw.fasta. [18:44:07] alignment.py (line 615): DEBUG: Relabeling 1962 (1962) with 1962 labels. [18:44:07] exhaustive.py (line 182): DEBUG: Merging alignment subset into placement subset for chunk 4: A_98_1. [18:44:07] alignment.py (line 727): DEBUG: Merging started ... [18:44:07] alignment.py (line 834): DEBUG: Merging finished ... [18:44:07] problem.py (line 246): DEBUG: Reading /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_98/A_98_2/hmmbuild.input.ntdezcbm.fasta [] and relabeling it based on 1901 orig column labels. [18:44:07] alignment.py (line 543): DEBUG: Reading base alignment: /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_98/A_98_2/hmmbuild.input.ntdezcbm.fasta. [18:44:07] alignment.py (line 615): DEBUG: Relabeling 1901 (1901) with 1901 labels. [18:44:07] exhaustive.py (line 182): DEBUG: Merging alignment subset into placement subset for chunk 4: A_98_2. [18:44:07] alignment.py (line 727): DEBUG: Merging started ... [18:44:07] alignment.py (line 834): DEBUG: Merging finished ... [18:44:07] problem.py (line 246): DEBUG: Reading /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_98/A_98_3/hmmbuild.input.m8ti6w5z.fasta [] and relabeling it based on 1955 orig column labels. [18:44:07] alignment.py (line 543): DEBUG: Reading base alignment: /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_98/A_98_3/hmmbuild.input.m8ti6w5z.fasta. [18:44:07] alignment.py (line 615): DEBUG: Relabeling 1955 (1955) with 1955 labels. [18:44:07] exhaustive.py (line 182): DEBUG: Merging alignment subset into placement subset for chunk 4: A_98_3. [18:44:07] alignment.py (line 727): DEBUG: Merging started ... [18:44:07] alignment.py (line 834): DEBUG: Merging finished ... [18:44:07] problem.py (line 246): DEBUG: Reading /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_98/A_98_4/hmmbuild.input.nwd4ko55.fasta [] and relabeling it based on 1905 orig column labels. [18:44:07] alignment.py (line 543): DEBUG: Reading base alignment: /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_98/A_98_4/hmmbuild.input.nwd4ko55.fasta. [18:44:07] alignment.py (line 615): DEBUG: Relabeling 1905 (1905) with 1905 labels. [18:44:07] exhaustive.py (line 182): DEBUG: Merging alignment subset into placement subset for chunk 4: A_98_4. [18:44:07] alignment.py (line 727): DEBUG: Merging started ... [18:44:07] alignment.py (line 834): DEBUG: Merging finished ... [18:44:07] problem.py (line 246): DEBUG: Reading /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_98/A_98_5/hmmbuild.input.w_xunvkh.fasta [] and relabeling it based on 1927 orig column labels. [18:44:07] alignment.py (line 543): DEBUG: Reading base alignment: /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_98/A_98_5/hmmbuild.input.w_xunvkh.fasta. [18:44:07] alignment.py (line 615): DEBUG: Relabeling 1927 (1927) with 1927 labels. [18:44:07] exhaustive.py (line 182): DEBUG: Merging alignment subset into placement subset for chunk 4: A_98_5. [18:44:07] alignment.py (line 727): DEBUG: Merging started ... [18:44:07] alignment.py (line 834): DEBUG: Merging finished ... [18:44:07] problem.py (line 246): DEBUG: Reading /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_98/A_98_6/hmmbuild.input.c8bj6zbx.fasta [] and relabeling it based on 1939 orig column labels. [18:44:07] alignment.py (line 543): DEBUG: Reading base alignment: /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_98/A_98_6/hmmbuild.input.c8bj6zbx.fasta. [18:44:07] alignment.py (line 615): DEBUG: Relabeling 1939 (1939) with 1939 labels. [18:44:07] exhaustive.py (line 182): DEBUG: Merging alignment subset into placement subset for chunk 4: A_98_6. [18:44:07] alignment.py (line 727): DEBUG: Merging started ... [18:44:07] alignment.py (line 834): DEBUG: Merging finished ... [18:44:07] problem.py (line 246): DEBUG: Reading /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_98/A_98_7/hmmbuild.input.31iuyqjm.fasta [] and relabeling it based on 2072 orig column labels. [18:44:07] alignment.py (line 543): DEBUG: Reading base alignment: /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_98/A_98_7/hmmbuild.input.31iuyqjm.fasta. [18:44:07] alignment.py (line 615): DEBUG: Relabeling 2072 (2072) with 2072 labels. [18:44:07] exhaustive.py (line 182): DEBUG: Merging alignment subset into placement subset for chunk 4: A_98_7. [18:44:07] alignment.py (line 727): DEBUG: Merging started ... [18:44:07] alignment.py (line 834): DEBUG: Merging finished ... [18:44:07] problem.py (line 246): DEBUG: Reading /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_98/A_98_0/hmmbuild.input.rnxhv0xp.fasta [] and relabeling it based on 1913 orig column labels. [18:44:07] alignment.py (line 543): DEBUG: Reading base alignment: /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_98/A_98_0/hmmbuild.input.rnxhv0xp.fasta. [18:44:07] alignment.py (line 615): DEBUG: Relabeling 1913 (1913) with 1913 labels. [18:44:07] exhaustive.py (line 182): DEBUG: Merging alignment subset into placement subset for chunk 5: A_98_0. [18:44:07] alignment.py (line 727): DEBUG: Merging started ... [18:44:07] alignment.py (line 834): DEBUG: Merging finished ... [18:44:07] problem.py (line 246): DEBUG: Reading /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_98/A_98_1/hmmbuild.input.padtu4pw.fasta [] and relabeling it based on 1962 orig column labels. [18:44:07] alignment.py (line 543): DEBUG: Reading base alignment: /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_98/A_98_1/hmmbuild.input.padtu4pw.fasta. [18:44:07] alignment.py (line 615): DEBUG: Relabeling 1962 (1962) with 1962 labels. [18:44:07] exhaustive.py (line 182): DEBUG: Merging alignment subset into placement subset for chunk 5: A_98_1. [18:44:07] alignment.py (line 727): DEBUG: Merging started ... [18:44:07] alignment.py (line 834): DEBUG: Merging finished ... [18:44:07] problem.py (line 246): DEBUG: Reading /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_98/A_98_2/hmmbuild.input.ntdezcbm.fasta [] and relabeling it based on 1901 orig column labels. [18:44:07] alignment.py (line 543): DEBUG: Reading base alignment: /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_98/A_98_2/hmmbuild.input.ntdezcbm.fasta. [18:44:07] alignment.py (line 615): DEBUG: Relabeling 1901 (1901) with 1901 labels. [18:44:07] exhaustive.py (line 182): DEBUG: Merging alignment subset into placement subset for chunk 5: A_98_2. [18:44:07] alignment.py (line 727): DEBUG: Merging started ... [18:44:07] alignment.py (line 834): DEBUG: Merging finished ... [18:44:07] problem.py (line 246): DEBUG: Reading /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_98/A_98_3/hmmbuild.input.m8ti6w5z.fasta [] and relabeling it based on 1955 orig column labels. [18:44:07] alignment.py (line 543): DEBUG: Reading base alignment: /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_98/A_98_3/hmmbuild.input.m8ti6w5z.fasta. [18:44:07] alignment.py (line 615): DEBUG: Relabeling 1955 (1955) with 1955 labels. [18:44:07] exhaustive.py (line 182): DEBUG: Merging alignment subset into placement subset for chunk 5: A_98_3. [18:44:07] alignment.py (line 727): DEBUG: Merging started ... [18:44:07] alignment.py (line 834): DEBUG: Merging finished ... [18:44:07] problem.py (line 246): DEBUG: Reading /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_98/A_98_4/hmmbuild.input.nwd4ko55.fasta [] and relabeling it based on 1905 orig column labels. [18:44:07] alignment.py (line 543): DEBUG: Reading base alignment: /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_98/A_98_4/hmmbuild.input.nwd4ko55.fasta. [18:44:07] alignment.py (line 615): DEBUG: Relabeling 1905 (1905) with 1905 labels. [18:44:07] exhaustive.py (line 182): DEBUG: Merging alignment subset into placement subset for chunk 5: A_98_4. [18:44:07] alignment.py (line 727): DEBUG: Merging started ... [18:44:07] alignment.py (line 834): DEBUG: Merging finished ... [18:44:07] problem.py (line 246): DEBUG: Reading /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_98/A_98_5/hmmbuild.input.w_xunvkh.fasta [] and relabeling it based on 1927 orig column labels. [18:44:07] alignment.py (line 543): DEBUG: Reading base alignment: /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_98/A_98_5/hmmbuild.input.w_xunvkh.fasta. [18:44:07] alignment.py (line 615): DEBUG: Relabeling 1927 (1927) with 1927 labels. [18:44:07] exhaustive.py (line 182): DEBUG: Merging alignment subset into placement subset for chunk 5: A_98_5. [18:44:07] alignment.py (line 727): DEBUG: Merging started ... [18:44:07] alignment.py (line 834): DEBUG: Merging finished ... [18:44:07] problem.py (line 246): DEBUG: Reading /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_98/A_98_6/hmmbuild.input.c8bj6zbx.fasta [] and relabeling it based on 1939 orig column labels. [18:44:07] alignment.py (line 543): DEBUG: Reading base alignment: /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_98/A_98_6/hmmbuild.input.c8bj6zbx.fasta. [18:44:07] alignment.py (line 615): DEBUG: Relabeling 1939 (1939) with 1939 labels. [18:44:07] exhaustive.py (line 182): DEBUG: Merging alignment subset into placement subset for chunk 5: A_98_6. [18:44:07] alignment.py (line 727): DEBUG: Merging started ... [18:44:07] alignment.py (line 834): DEBUG: Merging finished ... [18:44:07] problem.py (line 246): DEBUG: Reading /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_98/A_98_7/hmmbuild.input.31iuyqjm.fasta [] and relabeling it based on 2072 orig column labels. [18:44:07] alignment.py (line 543): DEBUG: Reading base alignment: /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_98/A_98_7/hmmbuild.input.31iuyqjm.fasta. [18:44:07] alignment.py (line 615): DEBUG: Relabeling 2072 (2072) with 2072 labels. [18:44:07] exhaustive.py (line 182): DEBUG: Merging alignment subset into placement subset for chunk 5: A_98_7. [18:44:07] alignment.py (line 727): DEBUG: Merging started ... [18:44:07] alignment.py (line 834): DEBUG: Merging finished ... [18:44:07] problem.py (line 246): DEBUG: Reading /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_98/A_98_0/hmmbuild.input.rnxhv0xp.fasta [] and relabeling it based on 1913 orig column labels. [18:44:07] alignment.py (line 543): DEBUG: Reading base alignment: /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_98/A_98_0/hmmbuild.input.rnxhv0xp.fasta. [18:44:07] alignment.py (line 615): DEBUG: Relabeling 1913 (1913) with 1913 labels. [18:44:07] exhaustive.py (line 182): DEBUG: Merging alignment subset into placement subset for chunk 6: A_98_0. [18:44:07] alignment.py (line 727): DEBUG: Merging started ... [18:44:07] alignment.py (line 834): DEBUG: Merging finished ... [18:44:07] problem.py (line 246): DEBUG: Reading /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_98/A_98_1/hmmbuild.input.padtu4pw.fasta [] and relabeling it based on 1962 orig column labels. [18:44:07] alignment.py (line 543): DEBUG: Reading base alignment: /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_98/A_98_1/hmmbuild.input.padtu4pw.fasta. [18:44:07] alignment.py (line 615): DEBUG: Relabeling 1962 (1962) with 1962 labels. [18:44:07] exhaustive.py (line 182): DEBUG: Merging alignment subset into placement subset for chunk 6: A_98_1. [18:44:07] alignment.py (line 727): DEBUG: Merging started ... [18:44:07] alignment.py (line 834): DEBUG: Merging finished ... [18:44:07] problem.py (line 246): DEBUG: Reading /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_98/A_98_2/hmmbuild.input.ntdezcbm.fasta [] and relabeling it based on 1901 orig column labels. [18:44:07] alignment.py (line 543): DEBUG: Reading base alignment: /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_98/A_98_2/hmmbuild.input.ntdezcbm.fasta. [18:44:07] alignment.py (line 615): DEBUG: Relabeling 1901 (1901) with 1901 labels. [18:44:07] exhaustive.py (line 182): DEBUG: Merging alignment subset into placement subset for chunk 6: A_98_2. [18:44:07] alignment.py (line 727): DEBUG: Merging started ... [18:44:07] alignment.py (line 834): DEBUG: Merging finished ... [18:44:07] problem.py (line 246): DEBUG: Reading /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_98/A_98_3/hmmbuild.input.m8ti6w5z.fasta [] and relabeling it based on 1955 orig column labels. [18:44:07] alignment.py (line 543): DEBUG: Reading base alignment: /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_98/A_98_3/hmmbuild.input.m8ti6w5z.fasta. [18:44:07] alignment.py (line 615): DEBUG: Relabeling 1955 (1955) with 1955 labels. [18:44:07] exhaustive.py (line 182): DEBUG: Merging alignment subset into placement subset for chunk 6: A_98_3. [18:44:07] alignment.py (line 727): DEBUG: Merging started ... [18:44:07] alignment.py (line 834): DEBUG: Merging finished ... [18:44:07] problem.py (line 246): DEBUG: Reading /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_98/A_98_4/hmmbuild.input.nwd4ko55.fasta [] and relabeling it based on 1905 orig column labels. [18:44:07] alignment.py (line 543): DEBUG: Reading base alignment: /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_98/A_98_4/hmmbuild.input.nwd4ko55.fasta. [18:44:07] alignment.py (line 615): DEBUG: Relabeling 1905 (1905) with 1905 labels. [18:44:07] exhaustive.py (line 182): DEBUG: Merging alignment subset into placement subset for chunk 6: A_98_4. [18:44:07] alignment.py (line 727): DEBUG: Merging started ... [18:44:07] alignment.py (line 834): DEBUG: Merging finished ... [18:44:07] problem.py (line 246): DEBUG: Reading /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_98/A_98_5/hmmbuild.input.w_xunvkh.fasta [] and relabeling it based on 1927 orig column labels. [18:44:07] alignment.py (line 543): DEBUG: Reading base alignment: /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_98/A_98_5/hmmbuild.input.w_xunvkh.fasta. [18:44:07] alignment.py (line 615): DEBUG: Relabeling 1927 (1927) with 1927 labels. [18:44:07] exhaustive.py (line 182): DEBUG: Merging alignment subset into placement subset for chunk 6: A_98_5. [18:44:07] alignment.py (line 727): DEBUG: Merging started ... [18:44:07] alignment.py (line 834): DEBUG: Merging finished ... [18:44:07] problem.py (line 246): DEBUG: Reading /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_98/A_98_6/hmmbuild.input.c8bj6zbx.fasta [] and relabeling it based on 1939 orig column labels. [18:44:07] alignment.py (line 543): DEBUG: Reading base alignment: /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_98/A_98_6/hmmbuild.input.c8bj6zbx.fasta. [18:44:07] alignment.py (line 615): DEBUG: Relabeling 1939 (1939) with 1939 labels. [18:44:07] exhaustive.py (line 182): DEBUG: Merging alignment subset into placement subset for chunk 6: A_98_6. [18:44:07] alignment.py (line 727): DEBUG: Merging started ... [18:44:07] alignment.py (line 834): DEBUG: Merging finished ... [18:44:07] problem.py (line 246): DEBUG: Reading /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_98/A_98_7/hmmbuild.input.31iuyqjm.fasta [] and relabeling it based on 2072 orig column labels. [18:44:07] alignment.py (line 543): DEBUG: Reading base alignment: /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_98/A_98_7/hmmbuild.input.31iuyqjm.fasta. [18:44:07] alignment.py (line 615): DEBUG: Relabeling 2072 (2072) with 2072 labels. [18:44:07] exhaustive.py (line 182): DEBUG: Merging alignment subset into placement subset for chunk 6: A_98_7. [18:44:07] alignment.py (line 727): DEBUG: Merging started ... [18:44:07] alignment.py (line 834): DEBUG: Merging finished ... [18:44:07] problem.py (line 246): DEBUG: Reading /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_98/A_98_0/hmmbuild.input.rnxhv0xp.fasta [] and relabeling it based on 1913 orig column labels. [18:44:07] alignment.py (line 543): DEBUG: Reading base alignment: /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_98/A_98_0/hmmbuild.input.rnxhv0xp.fasta. [18:44:07] alignment.py (line 615): DEBUG: Relabeling 1913 (1913) with 1913 labels. [18:44:07] exhaustive.py (line 182): DEBUG: Merging alignment subset into placement subset for chunk 7: A_98_0. [18:44:07] alignment.py (line 727): DEBUG: Merging started ... [18:44:07] alignment.py (line 834): DEBUG: Merging finished ... [18:44:07] problem.py (line 246): DEBUG: Reading /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_98/A_98_1/hmmbuild.input.padtu4pw.fasta [] and relabeling it based on 1962 orig column labels. [18:44:07] alignment.py (line 543): DEBUG: Reading base alignment: /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_98/A_98_1/hmmbuild.input.padtu4pw.fasta. [18:44:07] alignment.py (line 615): DEBUG: Relabeling 1962 (1962) with 1962 labels. [18:44:07] exhaustive.py (line 182): DEBUG: Merging alignment subset into placement subset for chunk 7: A_98_1. [18:44:07] alignment.py (line 727): DEBUG: Merging started ... [18:44:07] alignment.py (line 834): DEBUG: Merging finished ... [18:44:07] problem.py (line 246): DEBUG: Reading /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_98/A_98_2/hmmbuild.input.ntdezcbm.fasta [] and relabeling it based on 1901 orig column labels. [18:44:07] alignment.py (line 543): DEBUG: Reading base alignment: /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_98/A_98_2/hmmbuild.input.ntdezcbm.fasta. [18:44:07] alignment.py (line 615): DEBUG: Relabeling 1901 (1901) with 1901 labels. [18:44:07] exhaustive.py (line 182): DEBUG: Merging alignment subset into placement subset for chunk 7: A_98_2. [18:44:07] alignment.py (line 727): DEBUG: Merging started ... [18:44:07] alignment.py (line 834): DEBUG: Merging finished ... [18:44:07] problem.py (line 246): DEBUG: Reading /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_98/A_98_3/hmmbuild.input.m8ti6w5z.fasta [] and relabeling it based on 1955 orig column labels. [18:44:07] alignment.py (line 543): DEBUG: Reading base alignment: /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_98/A_98_3/hmmbuild.input.m8ti6w5z.fasta. [18:44:07] alignment.py (line 615): DEBUG: Relabeling 1955 (1955) with 1955 labels. [18:44:07] exhaustive.py (line 182): DEBUG: Merging alignment subset into placement subset for chunk 7: A_98_3. [18:44:07] alignment.py (line 727): DEBUG: Merging started ... [18:44:07] alignment.py (line 834): DEBUG: Merging finished ... [18:44:07] problem.py (line 246): DEBUG: Reading /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_98/A_98_4/hmmbuild.input.nwd4ko55.fasta [] and relabeling it based on 1905 orig column labels. [18:44:07] alignment.py (line 543): DEBUG: Reading base alignment: /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_98/A_98_4/hmmbuild.input.nwd4ko55.fasta. [18:44:07] alignment.py (line 615): DEBUG: Relabeling 1905 (1905) with 1905 labels. [18:44:07] exhaustive.py (line 182): DEBUG: Merging alignment subset into placement subset for chunk 7: A_98_4. [18:44:07] alignment.py (line 727): DEBUG: Merging started ... [18:44:07] alignment.py (line 834): DEBUG: Merging finished ... [18:44:07] problem.py (line 246): DEBUG: Reading /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_98/A_98_5/hmmbuild.input.w_xunvkh.fasta [] and relabeling it based on 1927 orig column labels. [18:44:07] alignment.py (line 543): DEBUG: Reading base alignment: /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_98/A_98_5/hmmbuild.input.w_xunvkh.fasta. [18:44:07] alignment.py (line 615): DEBUG: Relabeling 1927 (1927) with 1927 labels. [18:44:07] exhaustive.py (line 182): DEBUG: Merging alignment subset into placement subset for chunk 7: A_98_5. [18:44:07] alignment.py (line 727): DEBUG: Merging started ... [18:44:07] alignment.py (line 834): DEBUG: Merging finished ... [18:44:07] problem.py (line 246): DEBUG: Reading /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_98/A_98_6/hmmbuild.input.c8bj6zbx.fasta [] and relabeling it based on 1939 orig column labels. [18:44:07] alignment.py (line 543): DEBUG: Reading base alignment: /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_98/A_98_6/hmmbuild.input.c8bj6zbx.fasta. [18:44:07] alignment.py (line 615): DEBUG: Relabeling 1939 (1939) with 1939 labels. [18:44:07] exhaustive.py (line 182): DEBUG: Merging alignment subset into placement subset for chunk 7: A_98_6. [18:44:07] alignment.py (line 727): DEBUG: Merging started ... [18:44:07] alignment.py (line 834): DEBUG: Merging finished ... [18:44:07] problem.py (line 246): DEBUG: Reading /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_98/A_98_7/hmmbuild.input.31iuyqjm.fasta [] and relabeling it based on 2072 orig column labels. [18:44:07] alignment.py (line 543): DEBUG: Reading base alignment: /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_98/A_98_7/hmmbuild.input.31iuyqjm.fasta. [18:44:07] alignment.py (line 615): DEBUG: Relabeling 2072 (2072) with 2072 labels. [18:44:07] exhaustive.py (line 182): DEBUG: Merging alignment subset into placement subset for chunk 7: A_98_7. [18:44:07] alignment.py (line 727): DEBUG: Merging started ... [18:44:07] alignment.py (line 834): DEBUG: Merging finished ... [18:44:07] alignment.py (line 203): DEBUG: Writing alignment of type with length 0 to file /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_98/pplacer.extended.0.qdfy20ok.fasta [18:44:07] alignment.py (line 203): DEBUG: Writing alignment of type with length 4755 to file /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_98/pplacer.backbone.eovjyim0.fasta [18:44:07] alignment.py (line 203): DEBUG: Writing alignment of type with length 0 to file /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_98/pplacer.extended.1.53i3cmlk.fasta [18:44:07] alignment.py (line 203): DEBUG: Writing alignment of type with length 4755 to file /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_98/pplacer.backbone.6patfts5.fasta [18:44:07] alignment.py (line 203): DEBUG: Writing alignment of type with length 0 to file /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_98/pplacer.extended.2.ubxgrlph.fasta [18:44:07] alignment.py (line 203): DEBUG: Writing alignment of type with length 4755 to file /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_98/pplacer.backbone.rrebsyri.fasta [18:44:07] alignment.py (line 203): DEBUG: Writing alignment of type with length 0 to file /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_98/pplacer.extended.3.9d45wyaf.fasta [18:44:07] alignment.py (line 203): DEBUG: Writing alignment of type with length 4755 to file /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_98/pplacer.backbone._qwsoa68.fasta [18:44:08] alignment.py (line 203): DEBUG: Writing alignment of type with length 0 to file /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_98/pplacer.extended.4.eqgxi6l7.fasta [18:44:08] alignment.py (line 203): DEBUG: Writing alignment of type with length 4755 to file /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_98/pplacer.backbone.exc2jqmp.fasta [18:44:08] alignment.py (line 203): DEBUG: Writing alignment of type with length 0 to file /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_98/pplacer.extended.5.sztlqrao.fasta [18:44:08] alignment.py (line 203): DEBUG: Writing alignment of type with length 4755 to file /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_98/pplacer.backbone.gr693af4.fasta [18:44:08] alignment.py (line 203): DEBUG: Writing alignment of type with length 0 to file /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_98/pplacer.extended.6.0xdxryer.fasta [18:44:08] alignment.py (line 203): DEBUG: Writing alignment of type with length 4755 to file /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_98/pplacer.backbone._867c4qd.fasta [18:44:08] alignment.py (line 203): DEBUG: Writing alignment of type with length 0 to file /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_98/pplacer.extended.7.kxh4e9ie.fasta [18:44:08] alignment.py (line 203): DEBUG: Writing alignment of type with length 4755 to file /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_98/pplacer.backbone.7l68b9sl.fasta [18:44:08] exhaustive.py (line 151): INFO: Merging sub-alignments for placement problem : P_99. [18:44:08] problem.py (line 246): DEBUG: Reading /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_99/A_99_0/hmmbuild.input.2d66xbvu.fasta [] and relabeling it based on 1972 orig column labels. [18:44:08] alignment.py (line 543): DEBUG: Reading base alignment: /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_99/A_99_0/hmmbuild.input.2d66xbvu.fasta. [18:44:08] jobs.py (line 80): DEBUG: Starting pplacer Job with input: backbone_alignment_file:/tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_21/pplacer.backbone._slzjsx0.fasta, tree_file:/tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_21/pplacer.tree.58cr6km5.tre, info_file:/tmp/qiime2/lisou/data/e44b5e78-31e5-4a0f-9041-494bc3ca2df2/data/raxml-info.txt, extended alignment:/tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_21/pplacer.extended.0.0x1fuffu.fasta, output:/tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_21/pplacer.extended.0.0x1fuffu.jplace [18:44:08] jobs.py (line 106): DEBUG: Invocation of /home/lisou/anaconda3/envs/qiime2-2022.8/bin/pplacer --out-dir /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_21 -j 1 -r /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_21/pplacer.backbone._slzjsx0.fasta -s /tmp/qiime2/lisou/data/e44b5e78-31e5-4a0f-9041-494bc3ca2df2/data/raxml-info.txt -t /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_21/pplacer.tree.58cr6km5.tre --groups 10 /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_21/pplacer.extended.0.0x1fuffu.fasta [18:44:08] alignment.py (line 615): DEBUG: Relabeling 1972 (1972) with 1972 labels. [18:44:08] exhaustive.py (line 182): DEBUG: Merging alignment subset into placement subset for chunk 0: A_99_0. [18:44:08] alignment.py (line 727): DEBUG: Merging started ... [18:44:08] alignment.py (line 834): DEBUG: Merging finished ... [18:44:08] problem.py (line 246): DEBUG: Reading /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_99/A_99_1/hmmbuild.input.qyupxu70.fasta [] and relabeling it based on 1965 orig column labels. [18:44:08] alignment.py (line 543): DEBUG: Reading base alignment: /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_99/A_99_1/hmmbuild.input.qyupxu70.fasta. [18:44:08] alignment.py (line 615): DEBUG: Relabeling 1965 (1965) with 1965 labels. [18:44:08] exhaustive.py (line 182): DEBUG: Merging alignment subset into placement subset for chunk 0: A_99_1. [18:44:08] alignment.py (line 727): DEBUG: Merging started ... [18:44:08] alignment.py (line 834): DEBUG: Merging finished ... [18:44:08] problem.py (line 246): DEBUG: Reading /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_99/A_99_2/hmmbuild.input.dsxtfzvd.fasta [] and relabeling it based on 2012 orig column labels. [18:44:08] alignment.py (line 543): DEBUG: Reading base alignment: /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_99/A_99_2/hmmbuild.input.dsxtfzvd.fasta. [18:44:08] alignment.py (line 615): DEBUG: Relabeling 2012 (2012) with 2012 labels. [18:44:08] exhaustive.py (line 182): DEBUG: Merging alignment subset into placement subset for chunk 0: A_99_2. [18:44:08] alignment.py (line 727): DEBUG: Merging started ... [18:44:08] jobs.py (line 144): DEBUG: Finished pplacer Job with input: backbone_alignment_file:/tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_21/pplacer.backbone._slzjsx0.fasta, tree_file:/tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_21/pplacer.tree.58cr6km5.tre, info_file:/tmp/qiime2/lisou/data/e44b5e78-31e5-4a0f-9041-494bc3ca2df2/data/raxml-info.txt, extended alignment:/tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_21/pplacer.extended.0.0x1fuffu.fasta, output:/tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_21/pplacer.extended.0.0x1fuffu.jplace with: return code: -11 output: error: [18:44:08] alignment.py (line 834): DEBUG: Merging finished ... [18:44:08] problem.py (line 246): DEBUG: Reading /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_99/A_99_3/hmmbuild.input.nmd9xd52.fasta [] and relabeling it based on 2032 orig column labels. [18:44:08] alignment.py (line 543): DEBUG: Reading base alignment: /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_99/A_99_3/hmmbuild.input.nmd9xd52.fasta. [18:44:08] alignment.py (line 615): DEBUG: Relabeling 2032 (2032) with 2032 labels. [18:44:08] exhaustive.py (line 182): DEBUG: Merging alignment subset into placement subset for chunk 0: A_99_3. [18:44:08] alignment.py (line 727): DEBUG: Merging started ... [18:44:08] alignment.py (line 834): DEBUG: Merging finished ... [18:44:08] problem.py (line 246): DEBUG: Reading /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_99/A_99_4/hmmbuild.input.x0i5dj6w.fasta [] and relabeling it based on 1973 orig column labels. [18:44:08] alignment.py (line 543): DEBUG: Reading base alignment: /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_99/A_99_4/hmmbuild.input.x0i5dj6w.fasta. [18:44:08] alignment.py (line 615): DEBUG: Relabeling 1973 (1973) with 1973 labels. [18:44:08] exhaustive.py (line 182): DEBUG: Merging alignment subset into placement subset for chunk 0: A_99_4. [18:44:08] alignment.py (line 727): DEBUG: Merging started ... [18:44:08] alignment.py (line 834): DEBUG: Merging finished ... [18:44:08] problem.py (line 246): DEBUG: Reading /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_99/A_99_5/hmmbuild.input.dislhvzh.fasta [] and relabeling it based on 2113 orig column labels. [18:44:08] alignment.py (line 543): DEBUG: Reading base alignment: /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_99/A_99_5/hmmbuild.input.dislhvzh.fasta. [18:44:08] alignment.py (line 615): DEBUG: Relabeling 2113 (2113) with 2113 labels. [18:44:08] exhaustive.py (line 182): DEBUG: Merging alignment subset into placement subset for chunk 0: A_99_5. [18:44:08] alignment.py (line 727): DEBUG: Merging started ... [18:44:08] alignment.py (line 834): DEBUG: Merging finished ... [18:44:08] problem.py (line 246): DEBUG: Reading /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_99/A_99_6/hmmbuild.input.c8r809i9.fasta [] and relabeling it based on 2123 orig column labels. [18:44:08] alignment.py (line 543): DEBUG: Reading base alignment: /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_99/A_99_6/hmmbuild.input.c8r809i9.fasta. [18:44:08] alignment.py (line 615): DEBUG: Relabeling 2123 (2123) with 2123 labels. [18:44:08] exhaustive.py (line 182): DEBUG: Merging alignment subset into placement subset for chunk 0: A_99_6. [18:44:08] alignment.py (line 727): DEBUG: Merging started ... [18:44:08] alignment.py (line 834): DEBUG: Merging finished ... [18:44:08] problem.py (line 246): DEBUG: Reading /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_99/A_99_7/hmmbuild.input.6he0akr1.fasta [] and relabeling it based on 2055 orig column labels. [18:44:08] alignment.py (line 543): DEBUG: Reading base alignment: /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_99/A_99_7/hmmbuild.input.6he0akr1.fasta. [18:44:08] alignment.py (line 615): DEBUG: Relabeling 2055 (2055) with 2055 labels. [18:44:08] exhaustive.py (line 182): DEBUG: Merging alignment subset into placement subset for chunk 0: A_99_7. [18:44:08] alignment.py (line 727): DEBUG: Merging started ... [18:44:08] alignment.py (line 834): DEBUG: Merging finished ... [18:44:08] problem.py (line 246): DEBUG: Reading /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_99/A_99_0/hmmbuild.input.2d66xbvu.fasta [] and relabeling it based on 1972 orig column labels. [18:44:08] alignment.py (line 543): DEBUG: Reading base alignment: /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_99/A_99_0/hmmbuild.input.2d66xbvu.fasta. [18:44:08] alignment.py (line 615): DEBUG: Relabeling 1972 (1972) with 1972 labels. [18:44:08] exhaustive.py (line 182): DEBUG: Merging alignment subset into placement subset for chunk 1: A_99_0. [18:44:08] alignment.py (line 727): DEBUG: Merging started ... [18:44:08] alignment.py (line 834): DEBUG: Merging finished ... [18:44:08] problem.py (line 246): DEBUG: Reading /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_99/A_99_1/hmmbuild.input.qyupxu70.fasta [] and relabeling it based on 1965 orig column labels. [18:44:08] alignment.py (line 543): DEBUG: Reading base alignment: /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_99/A_99_1/hmmbuild.input.qyupxu70.fasta. [18:44:08] alignment.py (line 615): DEBUG: Relabeling 1965 (1965) with 1965 labels. [18:44:08] exhaustive.py (line 182): DEBUG: Merging alignment subset into placement subset for chunk 1: A_99_1. [18:44:08] alignment.py (line 727): DEBUG: Merging started ... [18:44:08] alignment.py (line 834): DEBUG: Merging finished ... [18:44:08] problem.py (line 246): DEBUG: Reading /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_99/A_99_2/hmmbuild.input.dsxtfzvd.fasta [] and relabeling it based on 2012 orig column labels. [18:44:08] alignment.py (line 543): DEBUG: Reading base alignment: /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_99/A_99_2/hmmbuild.input.dsxtfzvd.fasta. [18:44:08] alignment.py (line 615): DEBUG: Relabeling 2012 (2012) with 2012 labels. [18:44:08] exhaustive.py (line 182): DEBUG: Merging alignment subset into placement subset for chunk 1: A_99_2. [18:44:08] alignment.py (line 727): DEBUG: Merging started ... [18:44:08] alignment.py (line 834): DEBUG: Merging finished ... [18:44:08] problem.py (line 246): DEBUG: Reading /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_99/A_99_3/hmmbuild.input.nmd9xd52.fasta [] and relabeling it based on 2032 orig column labels. [18:44:08] alignment.py (line 543): DEBUG: Reading base alignment: /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_99/A_99_3/hmmbuild.input.nmd9xd52.fasta. [18:44:08] alignment.py (line 615): DEBUG: Relabeling 2032 (2032) with 2032 labels. [18:44:08] exhaustive.py (line 182): DEBUG: Merging alignment subset into placement subset for chunk 1: A_99_3. [18:44:08] alignment.py (line 727): DEBUG: Merging started ... [18:44:08] alignment.py (line 834): DEBUG: Merging finished ... [18:44:08] problem.py (line 246): DEBUG: Reading /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_99/A_99_4/hmmbuild.input.x0i5dj6w.fasta [] and relabeling it based on 1973 orig column labels. [18:44:08] alignment.py (line 543): DEBUG: Reading base alignment: /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_99/A_99_4/hmmbuild.input.x0i5dj6w.fasta. [18:44:08] alignment.py (line 615): DEBUG: Relabeling 1973 (1973) with 1973 labels. [18:44:08] exhaustive.py (line 182): DEBUG: Merging alignment subset into placement subset for chunk 1: A_99_4. [18:44:08] alignment.py (line 727): DEBUG: Merging started ... [18:44:08] alignment.py (line 834): DEBUG: Merging finished ... [18:44:08] problem.py (line 246): DEBUG: Reading /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_99/A_99_5/hmmbuild.input.dislhvzh.fasta [] and relabeling it based on 2113 orig column labels. [18:44:08] alignment.py (line 543): DEBUG: Reading base alignment: /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_99/A_99_5/hmmbuild.input.dislhvzh.fasta. [18:44:08] alignment.py (line 615): DEBUG: Relabeling 2113 (2113) with 2113 labels. [18:44:08] exhaustive.py (line 182): DEBUG: Merging alignment subset into placement subset for chunk 1: A_99_5. [18:44:08] alignment.py (line 727): DEBUG: Merging started ... [18:44:08] alignment.py (line 834): DEBUG: Merging finished ... [18:44:08] problem.py (line 246): DEBUG: Reading /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_99/A_99_6/hmmbuild.input.c8r809i9.fasta [] and relabeling it based on 2123 orig column labels. [18:44:08] alignment.py (line 543): DEBUG: Reading base alignment: /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_99/A_99_6/hmmbuild.input.c8r809i9.fasta. [18:44:08] alignment.py (line 615): DEBUG: Relabeling 2123 (2123) with 2123 labels. [18:44:08] exhaustive.py (line 182): DEBUG: Merging alignment subset into placement subset for chunk 1: A_99_6. [18:44:08] alignment.py (line 727): DEBUG: Merging started ... [18:44:08] alignment.py (line 834): DEBUG: Merging finished ... [18:44:08] problem.py (line 246): DEBUG: Reading /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_99/A_99_7/hmmbuild.input.6he0akr1.fasta [] and relabeling it based on 2055 orig column labels. [18:44:08] alignment.py (line 543): DEBUG: Reading base alignment: /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_99/A_99_7/hmmbuild.input.6he0akr1.fasta. [18:44:08] alignment.py (line 615): DEBUG: Relabeling 2055 (2055) with 2055 labels. [18:44:08] exhaustive.py (line 182): DEBUG: Merging alignment subset into placement subset for chunk 1: A_99_7. [18:44:08] alignment.py (line 727): DEBUG: Merging started ... [18:44:08] alignment.py (line 834): DEBUG: Merging finished ... [18:44:08] problem.py (line 246): DEBUG: Reading /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_99/A_99_0/hmmbuild.input.2d66xbvu.fasta [] and relabeling it based on 1972 orig column labels. [18:44:08] alignment.py (line 543): DEBUG: Reading base alignment: /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_99/A_99_0/hmmbuild.input.2d66xbvu.fasta. [18:44:08] alignment.py (line 615): DEBUG: Relabeling 1972 (1972) with 1972 labels. [18:44:08] exhaustive.py (line 182): DEBUG: Merging alignment subset into placement subset for chunk 2: A_99_0. [18:44:08] alignment.py (line 727): DEBUG: Merging started ... [18:44:08] alignment.py (line 834): DEBUG: Merging finished ... [18:44:08] problem.py (line 246): DEBUG: Reading /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_99/A_99_1/hmmbuild.input.qyupxu70.fasta [] and relabeling it based on 1965 orig column labels. [18:44:08] alignment.py (line 543): DEBUG: Reading base alignment: /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_99/A_99_1/hmmbuild.input.qyupxu70.fasta. [18:44:08] alignment.py (line 615): DEBUG: Relabeling 1965 (1965) with 1965 labels. [18:44:08] exhaustive.py (line 182): DEBUG: Merging alignment subset into placement subset for chunk 2: A_99_1. [18:44:08] alignment.py (line 727): DEBUG: Merging started ... [18:44:08] alignment.py (line 834): DEBUG: Merging finished ... [18:44:08] problem.py (line 246): DEBUG: Reading /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_99/A_99_2/hmmbuild.input.dsxtfzvd.fasta [] and relabeling it based on 2012 orig column labels. [18:44:08] alignment.py (line 543): DEBUG: Reading base alignment: /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_99/A_99_2/hmmbuild.input.dsxtfzvd.fasta. [18:44:08] alignment.py (line 615): DEBUG: Relabeling 2012 (2012) with 2012 labels. [18:44:08] exhaustive.py (line 182): DEBUG: Merging alignment subset into placement subset for chunk 2: A_99_2. [18:44:08] alignment.py (line 727): DEBUG: Merging started ... [18:44:08] alignment.py (line 834): DEBUG: Merging finished ... [18:44:08] problem.py (line 246): DEBUG: Reading /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_99/A_99_3/hmmbuild.input.nmd9xd52.fasta [] and relabeling it based on 2032 orig column labels. [18:44:08] alignment.py (line 543): DEBUG: Reading base alignment: /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_99/A_99_3/hmmbuild.input.nmd9xd52.fasta. [18:44:08] alignment.py (line 615): DEBUG: Relabeling 2032 (2032) with 2032 labels. [18:44:08] exhaustive.py (line 182): DEBUG: Merging alignment subset into placement subset for chunk 2: A_99_3. [18:44:08] alignment.py (line 727): DEBUG: Merging started ... [18:44:08] alignment.py (line 834): DEBUG: Merging finished ... [18:44:08] problem.py (line 246): DEBUG: Reading /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_99/A_99_4/hmmbuild.input.x0i5dj6w.fasta [] and relabeling it based on 1973 orig column labels. [18:44:08] alignment.py (line 543): DEBUG: Reading base alignment: /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_99/A_99_4/hmmbuild.input.x0i5dj6w.fasta. [18:44:08] alignment.py (line 615): DEBUG: Relabeling 1973 (1973) with 1973 labels. [18:44:08] exhaustive.py (line 182): DEBUG: Merging alignment subset into placement subset for chunk 2: A_99_4. [18:44:08] alignment.py (line 727): DEBUG: Merging started ... [18:44:08] alignment.py (line 834): DEBUG: Merging finished ... [18:44:08] problem.py (line 246): DEBUG: Reading /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_99/A_99_5/hmmbuild.input.dislhvzh.fasta [] and relabeling it based on 2113 orig column labels. [18:44:08] alignment.py (line 543): DEBUG: Reading base alignment: /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_99/A_99_5/hmmbuild.input.dislhvzh.fasta. [18:44:08] alignment.py (line 615): DEBUG: Relabeling 2113 (2113) with 2113 labels. [18:44:08] exhaustive.py (line 182): DEBUG: Merging alignment subset into placement subset for chunk 2: A_99_5. [18:44:08] alignment.py (line 727): DEBUG: Merging started ... [18:44:08] alignment.py (line 834): DEBUG: Merging finished ... [18:44:08] problem.py (line 246): DEBUG: Reading /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_99/A_99_6/hmmbuild.input.c8r809i9.fasta [] and relabeling it based on 2123 orig column labels. [18:44:08] alignment.py (line 543): DEBUG: Reading base alignment: /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_99/A_99_6/hmmbuild.input.c8r809i9.fasta. [18:44:08] alignment.py (line 615): DEBUG: Relabeling 2123 (2123) with 2123 labels. [18:44:08] exhaustive.py (line 182): DEBUG: Merging alignment subset into placement subset for chunk 2: A_99_6. [18:44:08] alignment.py (line 727): DEBUG: Merging started ... [18:44:08] alignment.py (line 834): DEBUG: Merging finished ... [18:44:08] problem.py (line 246): DEBUG: Reading /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_99/A_99_7/hmmbuild.input.6he0akr1.fasta [] and relabeling it based on 2055 orig column labels. [18:44:08] alignment.py (line 543): DEBUG: Reading base alignment: /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_99/A_99_7/hmmbuild.input.6he0akr1.fasta. [18:44:08] alignment.py (line 615): DEBUG: Relabeling 2055 (2055) with 2055 labels. [18:44:08] exhaustive.py (line 182): DEBUG: Merging alignment subset into placement subset for chunk 2: A_99_7. [18:44:08] alignment.py (line 727): DEBUG: Merging started ... [18:44:08] alignment.py (line 834): DEBUG: Merging finished ... [18:44:08] problem.py (line 246): DEBUG: Reading /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_99/A_99_0/hmmbuild.input.2d66xbvu.fasta [] and relabeling it based on 1972 orig column labels. [18:44:08] alignment.py (line 543): DEBUG: Reading base alignment: /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_99/A_99_0/hmmbuild.input.2d66xbvu.fasta. [18:44:08] alignment.py (line 615): DEBUG: Relabeling 1972 (1972) with 1972 labels. [18:44:08] exhaustive.py (line 182): DEBUG: Merging alignment subset into placement subset for chunk 3: A_99_0. [18:44:08] alignment.py (line 727): DEBUG: Merging started ... [18:44:08] alignment.py (line 834): DEBUG: Merging finished ... [18:44:08] problem.py (line 246): DEBUG: Reading /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_99/A_99_1/hmmbuild.input.qyupxu70.fasta [] and relabeling it based on 1965 orig column labels. [18:44:08] alignment.py (line 543): DEBUG: Reading base alignment: /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_99/A_99_1/hmmbuild.input.qyupxu70.fasta. [18:44:08] alignment.py (line 615): DEBUG: Relabeling 1965 (1965) with 1965 labels. [18:44:08] exhaustive.py (line 182): DEBUG: Merging alignment subset into placement subset for chunk 3: A_99_1. [18:44:08] alignment.py (line 727): DEBUG: Merging started ... [18:44:08] alignment.py (line 834): DEBUG: Merging finished ... [18:44:08] problem.py (line 246): DEBUG: Reading /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_99/A_99_2/hmmbuild.input.dsxtfzvd.fasta [] and relabeling it based on 2012 orig column labels. [18:44:08] alignment.py (line 543): DEBUG: Reading base alignment: /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_99/A_99_2/hmmbuild.input.dsxtfzvd.fasta. [18:44:08] alignment.py (line 615): DEBUG: Relabeling 2012 (2012) with 2012 labels. [18:44:08] exhaustive.py (line 182): DEBUG: Merging alignment subset into placement subset for chunk 3: A_99_2. [18:44:08] alignment.py (line 727): DEBUG: Merging started ... [18:44:08] alignment.py (line 834): DEBUG: Merging finished ... [18:44:08] problem.py (line 246): DEBUG: Reading /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_99/A_99_3/hmmbuild.input.nmd9xd52.fasta [] and relabeling it based on 2032 orig column labels. [18:44:08] alignment.py (line 543): DEBUG: Reading base alignment: /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_99/A_99_3/hmmbuild.input.nmd9xd52.fasta. [18:44:08] alignment.py (line 615): DEBUG: Relabeling 2032 (2032) with 2032 labels. [18:44:08] exhaustive.py (line 182): DEBUG: Merging alignment subset into placement subset for chunk 3: A_99_3. [18:44:08] alignment.py (line 727): DEBUG: Merging started ... [18:44:08] alignment.py (line 834): DEBUG: Merging finished ... [18:44:08] problem.py (line 246): DEBUG: Reading /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_99/A_99_4/hmmbuild.input.x0i5dj6w.fasta [] and relabeling it based on 1973 orig column labels. [18:44:08] alignment.py (line 543): DEBUG: Reading base alignment: /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_99/A_99_4/hmmbuild.input.x0i5dj6w.fasta. [18:44:08] alignment.py (line 615): DEBUG: Relabeling 1973 (1973) with 1973 labels. [18:44:08] exhaustive.py (line 182): DEBUG: Merging alignment subset into placement subset for chunk 3: A_99_4. [18:44:08] alignment.py (line 727): DEBUG: Merging started ... [18:44:08] alignment.py (line 834): DEBUG: Merging finished ... [18:44:08] problem.py (line 246): DEBUG: Reading /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_99/A_99_5/hmmbuild.input.dislhvzh.fasta [] and relabeling it based on 2113 orig column labels. [18:44:08] alignment.py (line 543): DEBUG: Reading base alignment: /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_99/A_99_5/hmmbuild.input.dislhvzh.fasta. [18:44:08] alignment.py (line 615): DEBUG: Relabeling 2113 (2113) with 2113 labels. [18:44:08] exhaustive.py (line 182): DEBUG: Merging alignment subset into placement subset for chunk 3: A_99_5. [18:44:08] alignment.py (line 727): DEBUG: Merging started ... [18:44:08] alignment.py (line 834): DEBUG: Merging finished ... [18:44:08] problem.py (line 246): DEBUG: Reading /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_99/A_99_6/hmmbuild.input.c8r809i9.fasta [] and relabeling it based on 2123 orig column labels. [18:44:08] alignment.py (line 543): DEBUG: Reading base alignment: /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_99/A_99_6/hmmbuild.input.c8r809i9.fasta. [18:44:08] alignment.py (line 615): DEBUG: Relabeling 2123 (2123) with 2123 labels. [18:44:08] exhaustive.py (line 182): DEBUG: Merging alignment subset into placement subset for chunk 3: A_99_6. [18:44:08] alignment.py (line 727): DEBUG: Merging started ... [18:44:08] alignment.py (line 834): DEBUG: Merging finished ... [18:44:08] problem.py (line 246): DEBUG: Reading /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_99/A_99_7/hmmbuild.input.6he0akr1.fasta [] and relabeling it based on 2055 orig column labels. [18:44:08] alignment.py (line 543): DEBUG: Reading base alignment: /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_99/A_99_7/hmmbuild.input.6he0akr1.fasta. [18:44:08] alignment.py (line 615): DEBUG: Relabeling 2055 (2055) with 2055 labels. [18:44:08] exhaustive.py (line 182): DEBUG: Merging alignment subset into placement subset for chunk 3: A_99_7. [18:44:08] alignment.py (line 727): DEBUG: Merging started ... [18:44:08] alignment.py (line 834): DEBUG: Merging finished ... [18:44:08] problem.py (line 246): DEBUG: Reading /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_99/A_99_0/hmmbuild.input.2d66xbvu.fasta [] and relabeling it based on 1972 orig column labels. [18:44:08] alignment.py (line 543): DEBUG: Reading base alignment: /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_99/A_99_0/hmmbuild.input.2d66xbvu.fasta. [18:44:08] alignment.py (line 615): DEBUG: Relabeling 1972 (1972) with 1972 labels. [18:44:08] exhaustive.py (line 182): DEBUG: Merging alignment subset into placement subset for chunk 4: A_99_0. [18:44:08] alignment.py (line 727): DEBUG: Merging started ... [18:44:08] alignment.py (line 834): DEBUG: Merging finished ... [18:44:08] problem.py (line 246): DEBUG: Reading /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_99/A_99_1/hmmbuild.input.qyupxu70.fasta [] and relabeling it based on 1965 orig column labels. [18:44:08] alignment.py (line 543): DEBUG: Reading base alignment: /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_99/A_99_1/hmmbuild.input.qyupxu70.fasta. [18:44:08] alignment.py (line 615): DEBUG: Relabeling 1965 (1965) with 1965 labels. [18:44:08] exhaustive.py (line 182): DEBUG: Merging alignment subset into placement subset for chunk 4: A_99_1. [18:44:08] alignment.py (line 727): DEBUG: Merging started ... [18:44:08] alignment.py (line 834): DEBUG: Merging finished ... [18:44:08] problem.py (line 246): DEBUG: Reading /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_99/A_99_2/hmmbuild.input.dsxtfzvd.fasta [] and relabeling it based on 2012 orig column labels. [18:44:08] alignment.py (line 543): DEBUG: Reading base alignment: /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_99/A_99_2/hmmbuild.input.dsxtfzvd.fasta. [18:44:08] alignment.py (line 615): DEBUG: Relabeling 2012 (2012) with 2012 labels. [18:44:08] exhaustive.py (line 182): DEBUG: Merging alignment subset into placement subset for chunk 4: A_99_2. [18:44:08] alignment.py (line 727): DEBUG: Merging started ... [18:44:08] alignment.py (line 834): DEBUG: Merging finished ... [18:44:08] problem.py (line 246): DEBUG: Reading /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_99/A_99_3/hmmbuild.input.nmd9xd52.fasta [] and relabeling it based on 2032 orig column labels. [18:44:08] alignment.py (line 543): DEBUG: Reading base alignment: /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_99/A_99_3/hmmbuild.input.nmd9xd52.fasta. [18:44:08] alignment.py (line 615): DEBUG: Relabeling 2032 (2032) with 2032 labels. [18:44:08] exhaustive.py (line 182): DEBUG: Merging alignment subset into placement subset for chunk 4: A_99_3. [18:44:08] alignment.py (line 727): DEBUG: Merging started ... [18:44:08] alignment.py (line 834): DEBUG: Merging finished ... [18:44:08] problem.py (line 246): DEBUG: Reading /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_99/A_99_4/hmmbuild.input.x0i5dj6w.fasta [] and relabeling it based on 1973 orig column labels. [18:44:08] alignment.py (line 543): DEBUG: Reading base alignment: /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_99/A_99_4/hmmbuild.input.x0i5dj6w.fasta. [18:44:08] alignment.py (line 615): DEBUG: Relabeling 1973 (1973) with 1973 labels. [18:44:08] exhaustive.py (line 182): DEBUG: Merging alignment subset into placement subset for chunk 4: A_99_4. [18:44:08] alignment.py (line 727): DEBUG: Merging started ... [18:44:08] alignment.py (line 834): DEBUG: Merging finished ... [18:44:08] problem.py (line 246): DEBUG: Reading /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_99/A_99_5/hmmbuild.input.dislhvzh.fasta [] and relabeling it based on 2113 orig column labels. [18:44:08] alignment.py (line 543): DEBUG: Reading base alignment: /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_99/A_99_5/hmmbuild.input.dislhvzh.fasta. [18:44:08] alignment.py (line 615): DEBUG: Relabeling 2113 (2113) with 2113 labels. [18:44:08] exhaustive.py (line 182): DEBUG: Merging alignment subset into placement subset for chunk 4: A_99_5. [18:44:08] alignment.py (line 727): DEBUG: Merging started ... [18:44:08] alignment.py (line 834): DEBUG: Merging finished ... [18:44:08] problem.py (line 246): DEBUG: Reading /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_99/A_99_6/hmmbuild.input.c8r809i9.fasta [] and relabeling it based on 2123 orig column labels. [18:44:08] alignment.py (line 543): DEBUG: Reading base alignment: /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_99/A_99_6/hmmbuild.input.c8r809i9.fasta. [18:44:08] alignment.py (line 615): DEBUG: Relabeling 2123 (2123) with 2123 labels. [18:44:08] exhaustive.py (line 182): DEBUG: Merging alignment subset into placement subset for chunk 4: A_99_6. [18:44:08] alignment.py (line 727): DEBUG: Merging started ... [18:44:08] alignment.py (line 834): DEBUG: Merging finished ... [18:44:08] problem.py (line 246): DEBUG: Reading /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_99/A_99_7/hmmbuild.input.6he0akr1.fasta [] and relabeling it based on 2055 orig column labels. [18:44:08] alignment.py (line 543): DEBUG: Reading base alignment: /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_99/A_99_7/hmmbuild.input.6he0akr1.fasta. [18:44:08] alignment.py (line 615): DEBUG: Relabeling 2055 (2055) with 2055 labels. [18:44:08] exhaustive.py (line 182): DEBUG: Merging alignment subset into placement subset for chunk 4: A_99_7. [18:44:08] alignment.py (line 727): DEBUG: Merging started ... [18:44:08] alignment.py (line 834): DEBUG: Merging finished ... [18:44:08] problem.py (line 246): DEBUG: Reading /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_99/A_99_0/hmmbuild.input.2d66xbvu.fasta [] and relabeling it based on 1972 orig column labels. [18:44:08] alignment.py (line 543): DEBUG: Reading base alignment: /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_99/A_99_0/hmmbuild.input.2d66xbvu.fasta. [18:44:08] alignment.py (line 615): DEBUG: Relabeling 1972 (1972) with 1972 labels. [18:44:08] exhaustive.py (line 182): DEBUG: Merging alignment subset into placement subset for chunk 5: A_99_0. [18:44:08] alignment.py (line 727): DEBUG: Merging started ... [18:44:08] alignment.py (line 834): DEBUG: Merging finished ... [18:44:08] problem.py (line 246): DEBUG: Reading /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_99/A_99_1/hmmbuild.input.qyupxu70.fasta [] and relabeling it based on 1965 orig column labels. [18:44:08] alignment.py (line 543): DEBUG: Reading base alignment: /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_99/A_99_1/hmmbuild.input.qyupxu70.fasta. [18:44:08] alignment.py (line 615): DEBUG: Relabeling 1965 (1965) with 1965 labels. [18:44:08] exhaustive.py (line 182): DEBUG: Merging alignment subset into placement subset for chunk 5: A_99_1. [18:44:08] alignment.py (line 727): DEBUG: Merging started ... [18:44:08] alignment.py (line 834): DEBUG: Merging finished ... [18:44:08] problem.py (line 246): DEBUG: Reading /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_99/A_99_2/hmmbuild.input.dsxtfzvd.fasta [] and relabeling it based on 2012 orig column labels. [18:44:08] alignment.py (line 543): DEBUG: Reading base alignment: /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_99/A_99_2/hmmbuild.input.dsxtfzvd.fasta. [18:44:08] alignment.py (line 615): DEBUG: Relabeling 2012 (2012) with 2012 labels. [18:44:08] exhaustive.py (line 182): DEBUG: Merging alignment subset into placement subset for chunk 5: A_99_2. [18:44:08] alignment.py (line 727): DEBUG: Merging started ... [18:44:08] alignment.py (line 834): DEBUG: Merging finished ... [18:44:08] problem.py (line 246): DEBUG: Reading /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_99/A_99_3/hmmbuild.input.nmd9xd52.fasta [] and relabeling it based on 2032 orig column labels. [18:44:08] alignment.py (line 543): DEBUG: Reading base alignment: /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_99/A_99_3/hmmbuild.input.nmd9xd52.fasta. [18:44:08] alignment.py (line 615): DEBUG: Relabeling 2032 (2032) with 2032 labels. [18:44:08] exhaustive.py (line 182): DEBUG: Merging alignment subset into placement subset for chunk 5: A_99_3. [18:44:08] alignment.py (line 727): DEBUG: Merging started ... [18:44:08] alignment.py (line 834): DEBUG: Merging finished ... [18:44:08] problem.py (line 246): DEBUG: Reading /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_99/A_99_4/hmmbuild.input.x0i5dj6w.fasta [] and relabeling it based on 1973 orig column labels. [18:44:08] alignment.py (line 543): DEBUG: Reading base alignment: /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_99/A_99_4/hmmbuild.input.x0i5dj6w.fasta. [18:44:08] alignment.py (line 615): DEBUG: Relabeling 1973 (1973) with 1973 labels. [18:44:08] exhaustive.py (line 182): DEBUG: Merging alignment subset into placement subset for chunk 5: A_99_4. [18:44:08] alignment.py (line 727): DEBUG: Merging started ... [18:44:08] alignment.py (line 834): DEBUG: Merging finished ... [18:44:08] problem.py (line 246): DEBUG: Reading /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_99/A_99_5/hmmbuild.input.dislhvzh.fasta [] and relabeling it based on 2113 orig column labels. [18:44:08] alignment.py (line 543): DEBUG: Reading base alignment: /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_99/A_99_5/hmmbuild.input.dislhvzh.fasta. [18:44:08] alignment.py (line 615): DEBUG: Relabeling 2113 (2113) with 2113 labels. [18:44:08] exhaustive.py (line 182): DEBUG: Merging alignment subset into placement subset for chunk 5: A_99_5. [18:44:08] alignment.py (line 727): DEBUG: Merging started ... [18:44:08] alignment.py (line 834): DEBUG: Merging finished ... [18:44:08] problem.py (line 246): DEBUG: Reading /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_99/A_99_6/hmmbuild.input.c8r809i9.fasta [] and relabeling it based on 2123 orig column labels. [18:44:08] alignment.py (line 543): DEBUG: Reading base alignment: /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_99/A_99_6/hmmbuild.input.c8r809i9.fasta. [18:44:08] alignment.py (line 615): DEBUG: Relabeling 2123 (2123) with 2123 labels. [18:44:08] exhaustive.py (line 182): DEBUG: Merging alignment subset into placement subset for chunk 5: A_99_6. [18:44:08] alignment.py (line 727): DEBUG: Merging started ... [18:44:08] alignment.py (line 834): DEBUG: Merging finished ... [18:44:08] problem.py (line 246): DEBUG: Reading /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_99/A_99_7/hmmbuild.input.6he0akr1.fasta [] and relabeling it based on 2055 orig column labels. [18:44:08] alignment.py (line 543): DEBUG: Reading base alignment: /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_99/A_99_7/hmmbuild.input.6he0akr1.fasta. [18:44:08] alignment.py (line 615): DEBUG: Relabeling 2055 (2055) with 2055 labels. [18:44:08] exhaustive.py (line 182): DEBUG: Merging alignment subset into placement subset for chunk 5: A_99_7. [18:44:08] alignment.py (line 727): DEBUG: Merging started ... [18:44:08] alignment.py (line 834): DEBUG: Merging finished ... [18:44:08] problem.py (line 246): DEBUG: Reading /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_99/A_99_0/hmmbuild.input.2d66xbvu.fasta [] and relabeling it based on 1972 orig column labels. [18:44:08] alignment.py (line 543): DEBUG: Reading base alignment: /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_99/A_99_0/hmmbuild.input.2d66xbvu.fasta. [18:44:08] alignment.py (line 615): DEBUG: Relabeling 1972 (1972) with 1972 labels. [18:44:08] exhaustive.py (line 182): DEBUG: Merging alignment subset into placement subset for chunk 6: A_99_0. [18:44:08] alignment.py (line 727): DEBUG: Merging started ... [18:44:08] alignment.py (line 834): DEBUG: Merging finished ... [18:44:08] problem.py (line 246): DEBUG: Reading /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_99/A_99_1/hmmbuild.input.qyupxu70.fasta [] and relabeling it based on 1965 orig column labels. [18:44:08] alignment.py (line 543): DEBUG: Reading base alignment: /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_99/A_99_1/hmmbuild.input.qyupxu70.fasta. [18:44:08] alignment.py (line 615): DEBUG: Relabeling 1965 (1965) with 1965 labels. [18:44:08] exhaustive.py (line 182): DEBUG: Merging alignment subset into placement subset for chunk 6: A_99_1. [18:44:08] alignment.py (line 727): DEBUG: Merging started ... [18:44:08] alignment.py (line 834): DEBUG: Merging finished ... [18:44:08] problem.py (line 246): DEBUG: Reading /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_99/A_99_2/hmmbuild.input.dsxtfzvd.fasta [] and relabeling it based on 2012 orig column labels. [18:44:08] alignment.py (line 543): DEBUG: Reading base alignment: /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_99/A_99_2/hmmbuild.input.dsxtfzvd.fasta. [18:44:08] alignment.py (line 615): DEBUG: Relabeling 2012 (2012) with 2012 labels. [18:44:08] exhaustive.py (line 182): DEBUG: Merging alignment subset into placement subset for chunk 6: A_99_2. [18:44:08] alignment.py (line 727): DEBUG: Merging started ... [18:44:08] alignment.py (line 834): DEBUG: Merging finished ... [18:44:08] problem.py (line 246): DEBUG: Reading /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_99/A_99_3/hmmbuild.input.nmd9xd52.fasta [] and relabeling it based on 2032 orig column labels. [18:44:08] alignment.py (line 543): DEBUG: Reading base alignment: /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_99/A_99_3/hmmbuild.input.nmd9xd52.fasta. [18:44:08] alignment.py (line 615): DEBUG: Relabeling 2032 (2032) with 2032 labels. [18:44:08] exhaustive.py (line 182): DEBUG: Merging alignment subset into placement subset for chunk 6: A_99_3. [18:44:08] alignment.py (line 727): DEBUG: Merging started ... [18:44:08] alignment.py (line 834): DEBUG: Merging finished ... [18:44:08] problem.py (line 246): DEBUG: Reading /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_99/A_99_4/hmmbuild.input.x0i5dj6w.fasta [] and relabeling it based on 1973 orig column labels. [18:44:08] alignment.py (line 543): DEBUG: Reading base alignment: /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_99/A_99_4/hmmbuild.input.x0i5dj6w.fasta. [18:44:08] alignment.py (line 615): DEBUG: Relabeling 1973 (1973) with 1973 labels. [18:44:08] exhaustive.py (line 182): DEBUG: Merging alignment subset into placement subset for chunk 6: A_99_4. [18:44:08] alignment.py (line 727): DEBUG: Merging started ... [18:44:08] alignment.py (line 834): DEBUG: Merging finished ... [18:44:08] problem.py (line 246): DEBUG: Reading /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_99/A_99_5/hmmbuild.input.dislhvzh.fasta [] and relabeling it based on 2113 orig column labels. [18:44:08] alignment.py (line 543): DEBUG: Reading base alignment: /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_99/A_99_5/hmmbuild.input.dislhvzh.fasta. [18:44:08] alignment.py (line 615): DEBUG: Relabeling 2113 (2113) with 2113 labels. [18:44:08] exhaustive.py (line 182): DEBUG: Merging alignment subset into placement subset for chunk 6: A_99_5. [18:44:08] alignment.py (line 727): DEBUG: Merging started ... [18:44:08] alignment.py (line 834): DEBUG: Merging finished ... [18:44:08] problem.py (line 246): DEBUG: Reading /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_99/A_99_6/hmmbuild.input.c8r809i9.fasta [] and relabeling it based on 2123 orig column labels. [18:44:08] alignment.py (line 543): DEBUG: Reading base alignment: /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_99/A_99_6/hmmbuild.input.c8r809i9.fasta. [18:44:08] alignment.py (line 615): DEBUG: Relabeling 2123 (2123) with 2123 labels. [18:44:08] exhaustive.py (line 182): DEBUG: Merging alignment subset into placement subset for chunk 6: A_99_6. [18:44:08] alignment.py (line 727): DEBUG: Merging started ... [18:44:08] alignment.py (line 834): DEBUG: Merging finished ... [18:44:08] problem.py (line 246): DEBUG: Reading /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_99/A_99_7/hmmbuild.input.6he0akr1.fasta [] and relabeling it based on 2055 orig column labels. [18:44:08] alignment.py (line 543): DEBUG: Reading base alignment: /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_99/A_99_7/hmmbuild.input.6he0akr1.fasta. [18:44:08] alignment.py (line 615): DEBUG: Relabeling 2055 (2055) with 2055 labels. [18:44:08] exhaustive.py (line 182): DEBUG: Merging alignment subset into placement subset for chunk 6: A_99_7. [18:44:08] alignment.py (line 727): DEBUG: Merging started ... [18:44:08] alignment.py (line 834): DEBUG: Merging finished ... [18:44:08] problem.py (line 246): DEBUG: Reading /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_99/A_99_0/hmmbuild.input.2d66xbvu.fasta [] and relabeling it based on 1972 orig column labels. [18:44:08] alignment.py (line 543): DEBUG: Reading base alignment: /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_99/A_99_0/hmmbuild.input.2d66xbvu.fasta. [18:44:08] alignment.py (line 615): DEBUG: Relabeling 1972 (1972) with 1972 labels. [18:44:08] exhaustive.py (line 182): DEBUG: Merging alignment subset into placement subset for chunk 7: A_99_0. [18:44:08] alignment.py (line 727): DEBUG: Merging started ... [18:44:08] alignment.py (line 834): DEBUG: Merging finished ... [18:44:08] problem.py (line 246): DEBUG: Reading /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_99/A_99_1/hmmbuild.input.qyupxu70.fasta [] and relabeling it based on 1965 orig column labels. [18:44:08] alignment.py (line 543): DEBUG: Reading base alignment: /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_99/A_99_1/hmmbuild.input.qyupxu70.fasta. [18:44:08] alignment.py (line 615): DEBUG: Relabeling 1965 (1965) with 1965 labels. [18:44:08] exhaustive.py (line 182): DEBUG: Merging alignment subset into placement subset for chunk 7: A_99_1. [18:44:08] alignment.py (line 727): DEBUG: Merging started ... [18:44:08] alignment.py (line 834): DEBUG: Merging finished ... [18:44:08] problem.py (line 246): DEBUG: Reading /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_99/A_99_2/hmmbuild.input.dsxtfzvd.fasta [] and relabeling it based on 2012 orig column labels. [18:44:08] alignment.py (line 543): DEBUG: Reading base alignment: /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_99/A_99_2/hmmbuild.input.dsxtfzvd.fasta. [18:44:08] alignment.py (line 615): DEBUG: Relabeling 2012 (2012) with 2012 labels. [18:44:08] exhaustive.py (line 182): DEBUG: Merging alignment subset into placement subset for chunk 7: A_99_2. [18:44:08] alignment.py (line 727): DEBUG: Merging started ... [18:44:08] alignment.py (line 834): DEBUG: Merging finished ... [18:44:08] problem.py (line 246): DEBUG: Reading /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_99/A_99_3/hmmbuild.input.nmd9xd52.fasta [] and relabeling it based on 2032 orig column labels. [18:44:08] alignment.py (line 543): DEBUG: Reading base alignment: /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_99/A_99_3/hmmbuild.input.nmd9xd52.fasta. [18:44:08] alignment.py (line 615): DEBUG: Relabeling 2032 (2032) with 2032 labels. [18:44:08] exhaustive.py (line 182): DEBUG: Merging alignment subset into placement subset for chunk 7: A_99_3. [18:44:08] alignment.py (line 727): DEBUG: Merging started ... [18:44:08] alignment.py (line 834): DEBUG: Merging finished ... [18:44:08] problem.py (line 246): DEBUG: Reading /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_99/A_99_4/hmmbuild.input.x0i5dj6w.fasta [] and relabeling it based on 1973 orig column labels. [18:44:08] alignment.py (line 543): DEBUG: Reading base alignment: /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_99/A_99_4/hmmbuild.input.x0i5dj6w.fasta. [18:44:08] alignment.py (line 615): DEBUG: Relabeling 1973 (1973) with 1973 labels. [18:44:08] exhaustive.py (line 182): DEBUG: Merging alignment subset into placement subset for chunk 7: A_99_4. [18:44:08] alignment.py (line 727): DEBUG: Merging started ... [18:44:08] alignment.py (line 834): DEBUG: Merging finished ... [18:44:08] problem.py (line 246): DEBUG: Reading /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_99/A_99_5/hmmbuild.input.dislhvzh.fasta [] and relabeling it based on 2113 orig column labels. [18:44:08] alignment.py (line 543): DEBUG: Reading base alignment: /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_99/A_99_5/hmmbuild.input.dislhvzh.fasta. [18:44:08] alignment.py (line 615): DEBUG: Relabeling 2113 (2113) with 2113 labels. [18:44:08] exhaustive.py (line 182): DEBUG: Merging alignment subset into placement subset for chunk 7: A_99_5. [18:44:08] alignment.py (line 727): DEBUG: Merging started ... [18:44:08] alignment.py (line 834): DEBUG: Merging finished ... [18:44:08] problem.py (line 246): DEBUG: Reading /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_99/A_99_6/hmmbuild.input.c8r809i9.fasta [] and relabeling it based on 2123 orig column labels. [18:44:08] alignment.py (line 543): DEBUG: Reading base alignment: /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_99/A_99_6/hmmbuild.input.c8r809i9.fasta. [18:44:08] alignment.py (line 615): DEBUG: Relabeling 2123 (2123) with 2123 labels. [18:44:08] exhaustive.py (line 182): DEBUG: Merging alignment subset into placement subset for chunk 7: A_99_6. [18:44:08] alignment.py (line 727): DEBUG: Merging started ... [18:44:08] alignment.py (line 834): DEBUG: Merging finished ... [18:44:08] problem.py (line 246): DEBUG: Reading /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_99/A_99_7/hmmbuild.input.6he0akr1.fasta [] and relabeling it based on 2055 orig column labels. [18:44:08] alignment.py (line 543): DEBUG: Reading base alignment: /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_99/A_99_7/hmmbuild.input.6he0akr1.fasta. [18:44:08] alignment.py (line 615): DEBUG: Relabeling 2055 (2055) with 2055 labels. [18:44:08] exhaustive.py (line 182): DEBUG: Merging alignment subset into placement subset for chunk 7: A_99_7. [18:44:08] alignment.py (line 727): DEBUG: Merging started ... [18:44:08] alignment.py (line 834): DEBUG: Merging finished ... [18:44:08] alignment.py (line 203): DEBUG: Writing alignment of type with length 0 to file /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_99/pplacer.extended.0._nljnttb.fasta [18:44:08] alignment.py (line 203): DEBUG: Writing alignment of type with length 4423 to file /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_99/pplacer.backbone._eoe9rph.fasta [18:44:08] alignment.py (line 203): DEBUG: Writing alignment of type with length 0 to file /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_99/pplacer.extended.1._3xahm1l.fasta [18:44:08] alignment.py (line 203): DEBUG: Writing alignment of type with length 4423 to file /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_99/pplacer.backbone.1thiaoc4.fasta [18:44:08] alignment.py (line 203): DEBUG: Writing alignment of type with length 0 to file /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_99/pplacer.extended.2.gds1j9zd.fasta [18:44:08] alignment.py (line 203): DEBUG: Writing alignment of type with length 4423 to file /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_99/pplacer.backbone.ydprpqht.fasta [18:44:08] alignment.py (line 203): DEBUG: Writing alignment of type with length 0 to file /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_99/pplacer.extended.3.bt82aip4.fasta [18:44:08] alignment.py (line 203): DEBUG: Writing alignment of type with length 4423 to file /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_99/pplacer.backbone.kz3qlog1.fasta [18:44:08] alignment.py (line 203): DEBUG: Writing alignment of type with length 0 to file /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_99/pplacer.extended.4.qmbovzdn.fasta [18:44:08] alignment.py (line 203): DEBUG: Writing alignment of type with length 4423 to file /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_99/pplacer.backbone.8tfti1uk.fasta [18:44:08] alignment.py (line 203): DEBUG: Writing alignment of type with length 0 to file /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_99/pplacer.extended.5.pr48qv02.fasta [18:44:08] alignment.py (line 203): DEBUG: Writing alignment of type with length 4423 to file /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_99/pplacer.backbone.7z_c953y.fasta [18:44:08] alignment.py (line 203): DEBUG: Writing alignment of type with length 0 to file /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_99/pplacer.extended.6.u1b0zda3.fasta [18:44:08] alignment.py (line 203): DEBUG: Writing alignment of type with length 4423 to file /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_99/pplacer.backbone.n42p3gc6.fasta [18:44:09] alignment.py (line 203): DEBUG: Writing alignment of type with length 0 to file /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_99/pplacer.extended.7.zz014rkn.fasta [18:44:09] alignment.py (line 203): DEBUG: Writing alignment of type with length 4423 to file /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_99/pplacer.backbone.hsn3pw2d.fasta [18:44:09] exhaustive.py (line 151): INFO: Merging sub-alignments for placement problem : P_100. [18:44:09] problem.py (line 246): DEBUG: Reading /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_100/A_100_0/hmmbuild.input.sngnjgfm.fasta [] and relabeling it based on 2122 orig column labels. [18:44:09] alignment.py (line 543): DEBUG: Reading base alignment: /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_100/A_100_0/hmmbuild.input.sngnjgfm.fasta. [18:44:09] alignment.py (line 615): DEBUG: Relabeling 2122 (2122) with 2122 labels. [18:44:09] exhaustive.py (line 182): DEBUG: Merging alignment subset into placement subset for chunk 0: A_100_0. [18:44:09] alignment.py (line 727): DEBUG: Merging started ... [18:44:09] alignment.py (line 834): DEBUG: Merging finished ... [18:44:09] problem.py (line 246): DEBUG: Reading /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_100/A_100_1/hmmbuild.input.3_hi9_qd.fasta [] and relabeling it based on 2101 orig column labels. [18:44:09] alignment.py (line 543): DEBUG: Reading base alignment: /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_100/A_100_1/hmmbuild.input.3_hi9_qd.fasta. [18:44:09] alignment.py (line 615): DEBUG: Relabeling 2101 (2101) with 2101 labels. [18:44:09] exhaustive.py (line 182): DEBUG: Merging alignment subset into placement subset for chunk 0: A_100_1. [18:44:09] alignment.py (line 727): DEBUG: Merging started ... [18:44:09] alignment.py (line 834): DEBUG: Merging finished ... [18:44:09] problem.py (line 246): DEBUG: Reading /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_100/A_100_2/hmmbuild.input.0we6gl60.fasta [] and relabeling it based on 2062 orig column labels. [18:44:09] alignment.py (line 543): DEBUG: Reading base alignment: /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_100/A_100_2/hmmbuild.input.0we6gl60.fasta. [18:44:09] alignment.py (line 615): DEBUG: Relabeling 2062 (2062) with 2062 labels. [18:44:09] exhaustive.py (line 182): DEBUG: Merging alignment subset into placement subset for chunk 0: A_100_2. [18:44:09] alignment.py (line 727): DEBUG: Merging started ... [18:44:09] alignment.py (line 834): DEBUG: Merging finished ... [18:44:09] problem.py (line 246): DEBUG: Reading /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_100/A_100_3/hmmbuild.input.6a32m7gn.fasta [] and relabeling it based on 2108 orig column labels. [18:44:09] alignment.py (line 543): DEBUG: Reading base alignment: /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_100/A_100_3/hmmbuild.input.6a32m7gn.fasta. [18:44:09] alignment.py (line 615): DEBUG: Relabeling 2108 (2108) with 2108 labels. [18:44:09] exhaustive.py (line 182): DEBUG: Merging alignment subset into placement subset for chunk 0: A_100_3. [18:44:09] alignment.py (line 727): DEBUG: Merging started ... [18:44:09] alignment.py (line 834): DEBUG: Merging finished ... [18:44:09] problem.py (line 246): DEBUG: Reading /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_100/A_100_4/hmmbuild.input.oz1p6lho.fasta [] and relabeling it based on 2134 orig column labels. [18:44:09] alignment.py (line 543): DEBUG: Reading base alignment: /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_100/A_100_4/hmmbuild.input.oz1p6lho.fasta. [18:44:09] alignment.py (line 615): DEBUG: Relabeling 2134 (2134) with 2134 labels. [18:44:09] exhaustive.py (line 182): DEBUG: Merging alignment subset into placement subset for chunk 0: A_100_4. [18:44:09] alignment.py (line 727): DEBUG: Merging started ... [18:44:09] alignment.py (line 834): DEBUG: Merging finished ... [18:44:09] problem.py (line 246): DEBUG: Reading /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_100/A_100_5/hmmbuild.input.ye3we19d.fasta [] and relabeling it based on 2156 orig column labels. [18:44:09] alignment.py (line 543): DEBUG: Reading base alignment: /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_100/A_100_5/hmmbuild.input.ye3we19d.fasta. [18:44:09] alignment.py (line 615): DEBUG: Relabeling 2156 (2156) with 2156 labels. [18:44:09] exhaustive.py (line 182): DEBUG: Merging alignment subset into placement subset for chunk 0: A_100_5. [18:44:09] alignment.py (line 727): DEBUG: Merging started ... [18:44:09] alignment.py (line 834): DEBUG: Merging finished ... [18:44:09] problem.py (line 246): DEBUG: Reading /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_100/A_100_0/hmmbuild.input.sngnjgfm.fasta [] and relabeling it based on 2122 orig column labels. [18:44:09] alignment.py (line 543): DEBUG: Reading base alignment: /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_100/A_100_0/hmmbuild.input.sngnjgfm.fasta. [18:44:09] alignment.py (line 615): DEBUG: Relabeling 2122 (2122) with 2122 labels. [18:44:09] exhaustive.py (line 182): DEBUG: Merging alignment subset into placement subset for chunk 1: A_100_0. [18:44:09] alignment.py (line 727): DEBUG: Merging started ... [18:44:09] alignment.py (line 834): DEBUG: Merging finished ... [18:44:09] problem.py (line 246): DEBUG: Reading /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_100/A_100_1/hmmbuild.input.3_hi9_qd.fasta [] and relabeling it based on 2101 orig column labels. [18:44:09] alignment.py (line 543): DEBUG: Reading base alignment: /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_100/A_100_1/hmmbuild.input.3_hi9_qd.fasta. [18:44:09] alignment.py (line 615): DEBUG: Relabeling 2101 (2101) with 2101 labels. [18:44:09] exhaustive.py (line 182): DEBUG: Merging alignment subset into placement subset for chunk 1: A_100_1. [18:44:09] alignment.py (line 727): DEBUG: Merging started ... [18:44:09] alignment.py (line 834): DEBUG: Merging finished ... [18:44:09] problem.py (line 246): DEBUG: Reading /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_100/A_100_2/hmmbuild.input.0we6gl60.fasta [] and relabeling it based on 2062 orig column labels. [18:44:09] alignment.py (line 543): DEBUG: Reading base alignment: /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_100/A_100_2/hmmbuild.input.0we6gl60.fasta. [18:44:09] alignment.py (line 615): DEBUG: Relabeling 2062 (2062) with 2062 labels. [18:44:09] exhaustive.py (line 182): DEBUG: Merging alignment subset into placement subset for chunk 1: A_100_2. [18:44:09] alignment.py (line 727): DEBUG: Merging started ... [18:44:09] alignment.py (line 834): DEBUG: Merging finished ... [18:44:09] problem.py (line 246): DEBUG: Reading /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_100/A_100_3/hmmbuild.input.6a32m7gn.fasta [] and relabeling it based on 2108 orig column labels. [18:44:09] alignment.py (line 543): DEBUG: Reading base alignment: /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_100/A_100_3/hmmbuild.input.6a32m7gn.fasta. [18:44:09] alignment.py (line 615): DEBUG: Relabeling 2108 (2108) with 2108 labels. [18:44:09] exhaustive.py (line 182): DEBUG: Merging alignment subset into placement subset for chunk 1: A_100_3. [18:44:09] alignment.py (line 727): DEBUG: Merging started ... [18:44:09] alignment.py (line 834): DEBUG: Merging finished ... [18:44:09] problem.py (line 246): DEBUG: Reading /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_100/A_100_4/hmmbuild.input.oz1p6lho.fasta [] and relabeling it based on 2134 orig column labels. [18:44:09] alignment.py (line 543): DEBUG: Reading base alignment: /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_100/A_100_4/hmmbuild.input.oz1p6lho.fasta. [18:44:09] alignment.py (line 615): DEBUG: Relabeling 2134 (2134) with 2134 labels. [18:44:09] exhaustive.py (line 182): DEBUG: Merging alignment subset into placement subset for chunk 1: A_100_4. [18:44:09] alignment.py (line 727): DEBUG: Merging started ... [18:44:09] alignment.py (line 834): DEBUG: Merging finished ... [18:44:09] problem.py (line 246): DEBUG: Reading /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_100/A_100_5/hmmbuild.input.ye3we19d.fasta [] and relabeling it based on 2156 orig column labels. [18:44:09] alignment.py (line 543): DEBUG: Reading base alignment: /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_100/A_100_5/hmmbuild.input.ye3we19d.fasta. [18:44:09] alignment.py (line 615): DEBUG: Relabeling 2156 (2156) with 2156 labels. [18:44:09] exhaustive.py (line 182): DEBUG: Merging alignment subset into placement subset for chunk 1: A_100_5. [18:44:09] alignment.py (line 727): DEBUG: Merging started ... [18:44:09] alignment.py (line 834): DEBUG: Merging finished ... [18:44:09] problem.py (line 246): DEBUG: Reading /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_100/A_100_0/hmmbuild.input.sngnjgfm.fasta [] and relabeling it based on 2122 orig column labels. [18:44:09] alignment.py (line 543): DEBUG: Reading base alignment: /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_100/A_100_0/hmmbuild.input.sngnjgfm.fasta. [18:44:09] alignment.py (line 615): DEBUG: Relabeling 2122 (2122) with 2122 labels. [18:44:09] exhaustive.py (line 182): DEBUG: Merging alignment subset into placement subset for chunk 2: A_100_0. [18:44:09] alignment.py (line 727): DEBUG: Merging started ... [18:44:09] alignment.py (line 834): DEBUG: Merging finished ... [18:44:09] problem.py (line 246): DEBUG: Reading /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_100/A_100_1/hmmbuild.input.3_hi9_qd.fasta [] and relabeling it based on 2101 orig column labels. [18:44:09] alignment.py (line 543): DEBUG: Reading base alignment: /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_100/A_100_1/hmmbuild.input.3_hi9_qd.fasta. [18:44:09] alignment.py (line 615): DEBUG: Relabeling 2101 (2101) with 2101 labels. [18:44:09] exhaustive.py (line 182): DEBUG: Merging alignment subset into placement subset for chunk 2: A_100_1. [18:44:09] alignment.py (line 727): DEBUG: Merging started ... [18:44:09] alignment.py (line 834): DEBUG: Merging finished ... [18:44:09] problem.py (line 246): DEBUG: Reading /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_100/A_100_2/hmmbuild.input.0we6gl60.fasta [] and relabeling it based on 2062 orig column labels. [18:44:09] alignment.py (line 543): DEBUG: Reading base alignment: /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_100/A_100_2/hmmbuild.input.0we6gl60.fasta. [18:44:09] alignment.py (line 615): DEBUG: Relabeling 2062 (2062) with 2062 labels. [18:44:09] exhaustive.py (line 182): DEBUG: Merging alignment subset into placement subset for chunk 2: A_100_2. [18:44:09] alignment.py (line 727): DEBUG: Merging started ... [18:44:09] alignment.py (line 834): DEBUG: Merging finished ... [18:44:09] problem.py (line 246): DEBUG: Reading /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_100/A_100_3/hmmbuild.input.6a32m7gn.fasta [] and relabeling it based on 2108 orig column labels. [18:44:09] alignment.py (line 543): DEBUG: Reading base alignment: /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_100/A_100_3/hmmbuild.input.6a32m7gn.fasta. [18:44:09] alignment.py (line 615): DEBUG: Relabeling 2108 (2108) with 2108 labels. [18:44:09] exhaustive.py (line 182): DEBUG: Merging alignment subset into placement subset for chunk 2: A_100_3. [18:44:09] alignment.py (line 727): DEBUG: Merging started ... [18:44:09] alignment.py (line 834): DEBUG: Merging finished ... [18:44:09] problem.py (line 246): DEBUG: Reading /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_100/A_100_4/hmmbuild.input.oz1p6lho.fasta [] and relabeling it based on 2134 orig column labels. [18:44:09] alignment.py (line 543): DEBUG: Reading base alignment: /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_100/A_100_4/hmmbuild.input.oz1p6lho.fasta. [18:44:09] alignment.py (line 615): DEBUG: Relabeling 2134 (2134) with 2134 labels. [18:44:09] exhaustive.py (line 182): DEBUG: Merging alignment subset into placement subset for chunk 2: A_100_4. [18:44:09] alignment.py (line 727): DEBUG: Merging started ... [18:44:09] alignment.py (line 834): DEBUG: Merging finished ... [18:44:09] problem.py (line 246): DEBUG: Reading /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_100/A_100_5/hmmbuild.input.ye3we19d.fasta [] and relabeling it based on 2156 orig column labels. [18:44:09] alignment.py (line 543): DEBUG: Reading base alignment: /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_100/A_100_5/hmmbuild.input.ye3we19d.fasta. [18:44:09] alignment.py (line 615): DEBUG: Relabeling 2156 (2156) with 2156 labels. [18:44:09] exhaustive.py (line 182): DEBUG: Merging alignment subset into placement subset for chunk 2: A_100_5. [18:44:09] alignment.py (line 727): DEBUG: Merging started ... [18:44:09] alignment.py (line 834): DEBUG: Merging finished ... [18:44:09] problem.py (line 246): DEBUG: Reading /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_100/A_100_0/hmmbuild.input.sngnjgfm.fasta [] and relabeling it based on 2122 orig column labels. [18:44:09] alignment.py (line 543): DEBUG: Reading base alignment: /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_100/A_100_0/hmmbuild.input.sngnjgfm.fasta. [18:44:09] alignment.py (line 615): DEBUG: Relabeling 2122 (2122) with 2122 labels. [18:44:09] exhaustive.py (line 182): DEBUG: Merging alignment subset into placement subset for chunk 3: A_100_0. [18:44:09] alignment.py (line 727): DEBUG: Merging started ... [18:44:09] alignment.py (line 834): DEBUG: Merging finished ... [18:44:09] problem.py (line 246): DEBUG: Reading /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_100/A_100_1/hmmbuild.input.3_hi9_qd.fasta [] and relabeling it based on 2101 orig column labels. [18:44:09] alignment.py (line 543): DEBUG: Reading base alignment: /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_100/A_100_1/hmmbuild.input.3_hi9_qd.fasta. [18:44:09] alignment.py (line 615): DEBUG: Relabeling 2101 (2101) with 2101 labels. [18:44:09] exhaustive.py (line 182): DEBUG: Merging alignment subset into placement subset for chunk 3: A_100_1. [18:44:09] alignment.py (line 727): DEBUG: Merging started ... [18:44:09] alignment.py (line 834): DEBUG: Merging finished ... [18:44:09] problem.py (line 246): DEBUG: Reading /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_100/A_100_2/hmmbuild.input.0we6gl60.fasta [] and relabeling it based on 2062 orig column labels. [18:44:09] alignment.py (line 543): DEBUG: Reading base alignment: /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_100/A_100_2/hmmbuild.input.0we6gl60.fasta. [18:44:09] alignment.py (line 615): DEBUG: Relabeling 2062 (2062) with 2062 labels. [18:44:09] exhaustive.py (line 182): DEBUG: Merging alignment subset into placement subset for chunk 3: A_100_2. [18:44:09] alignment.py (line 727): DEBUG: Merging started ... [18:44:09] alignment.py (line 834): DEBUG: Merging finished ... [18:44:09] problem.py (line 246): DEBUG: Reading /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_100/A_100_3/hmmbuild.input.6a32m7gn.fasta [] and relabeling it based on 2108 orig column labels. [18:44:09] alignment.py (line 543): DEBUG: Reading base alignment: /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_100/A_100_3/hmmbuild.input.6a32m7gn.fasta. [18:44:09] alignment.py (line 615): DEBUG: Relabeling 2108 (2108) with 2108 labels. [18:44:09] exhaustive.py (line 182): DEBUG: Merging alignment subset into placement subset for chunk 3: A_100_3. [18:44:09] alignment.py (line 727): DEBUG: Merging started ... [18:44:09] alignment.py (line 834): DEBUG: Merging finished ... [18:44:09] problem.py (line 246): DEBUG: Reading /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_100/A_100_4/hmmbuild.input.oz1p6lho.fasta [] and relabeling it based on 2134 orig column labels. [18:44:09] alignment.py (line 543): DEBUG: Reading base alignment: /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_100/A_100_4/hmmbuild.input.oz1p6lho.fasta. [18:44:09] alignment.py (line 615): DEBUG: Relabeling 2134 (2134) with 2134 labels. [18:44:09] exhaustive.py (line 182): DEBUG: Merging alignment subset into placement subset for chunk 3: A_100_4. [18:44:09] alignment.py (line 727): DEBUG: Merging started ... [18:44:09] alignment.py (line 834): DEBUG: Merging finished ... [18:44:09] problem.py (line 246): DEBUG: Reading /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_100/A_100_5/hmmbuild.input.ye3we19d.fasta [] and relabeling it based on 2156 orig column labels. [18:44:09] alignment.py (line 543): DEBUG: Reading base alignment: /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_100/A_100_5/hmmbuild.input.ye3we19d.fasta. [18:44:09] alignment.py (line 615): DEBUG: Relabeling 2156 (2156) with 2156 labels. [18:44:09] exhaustive.py (line 182): DEBUG: Merging alignment subset into placement subset for chunk 3: A_100_5. [18:44:09] alignment.py (line 727): DEBUG: Merging started ... [18:44:09] alignment.py (line 834): DEBUG: Merging finished ... [18:44:09] problem.py (line 246): DEBUG: Reading /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_100/A_100_0/hmmbuild.input.sngnjgfm.fasta [] and relabeling it based on 2122 orig column labels. [18:44:09] alignment.py (line 543): DEBUG: Reading base alignment: /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_100/A_100_0/hmmbuild.input.sngnjgfm.fasta. [18:44:09] alignment.py (line 615): DEBUG: Relabeling 2122 (2122) with 2122 labels. [18:44:09] exhaustive.py (line 182): DEBUG: Merging alignment subset into placement subset for chunk 4: A_100_0. [18:44:09] alignment.py (line 727): DEBUG: Merging started ... [18:44:09] alignment.py (line 834): DEBUG: Merging finished ... [18:44:09] problem.py (line 246): DEBUG: Reading /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_100/A_100_1/hmmbuild.input.3_hi9_qd.fasta [] and relabeling it based on 2101 orig column labels. [18:44:09] alignment.py (line 543): DEBUG: Reading base alignment: /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_100/A_100_1/hmmbuild.input.3_hi9_qd.fasta. [18:44:09] alignment.py (line 615): DEBUG: Relabeling 2101 (2101) with 2101 labels. [18:44:09] exhaustive.py (line 182): DEBUG: Merging alignment subset into placement subset for chunk 4: A_100_1. [18:44:09] alignment.py (line 727): DEBUG: Merging started ... [18:44:09] alignment.py (line 834): DEBUG: Merging finished ... [18:44:09] problem.py (line 246): DEBUG: Reading /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_100/A_100_2/hmmbuild.input.0we6gl60.fasta [] and relabeling it based on 2062 orig column labels. [18:44:09] alignment.py (line 543): DEBUG: Reading base alignment: /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_100/A_100_2/hmmbuild.input.0we6gl60.fasta. [18:44:09] alignment.py (line 615): DEBUG: Relabeling 2062 (2062) with 2062 labels. [18:44:09] exhaustive.py (line 182): DEBUG: Merging alignment subset into placement subset for chunk 4: A_100_2. [18:44:09] alignment.py (line 727): DEBUG: Merging started ... [18:44:09] alignment.py (line 834): DEBUG: Merging finished ... [18:44:09] problem.py (line 246): DEBUG: Reading /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_100/A_100_3/hmmbuild.input.6a32m7gn.fasta [] and relabeling it based on 2108 orig column labels. [18:44:09] alignment.py (line 543): DEBUG: Reading base alignment: /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_100/A_100_3/hmmbuild.input.6a32m7gn.fasta. [18:44:09] alignment.py (line 615): DEBUG: Relabeling 2108 (2108) with 2108 labels. [18:44:09] exhaustive.py (line 182): DEBUG: Merging alignment subset into placement subset for chunk 4: A_100_3. [18:44:09] alignment.py (line 727): DEBUG: Merging started ... [18:44:09] alignment.py (line 834): DEBUG: Merging finished ... [18:44:09] problem.py (line 246): DEBUG: Reading /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_100/A_100_4/hmmbuild.input.oz1p6lho.fasta [] and relabeling it based on 2134 orig column labels. [18:44:09] alignment.py (line 543): DEBUG: Reading base alignment: /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_100/A_100_4/hmmbuild.input.oz1p6lho.fasta. [18:44:09] alignment.py (line 615): DEBUG: Relabeling 2134 (2134) with 2134 labels. [18:44:09] exhaustive.py (line 182): DEBUG: Merging alignment subset into placement subset for chunk 4: A_100_4. [18:44:09] alignment.py (line 727): DEBUG: Merging started ... [18:44:09] alignment.py (line 834): DEBUG: Merging finished ... [18:44:09] problem.py (line 246): DEBUG: Reading /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_100/A_100_5/hmmbuild.input.ye3we19d.fasta [] and relabeling it based on 2156 orig column labels. [18:44:09] alignment.py (line 543): DEBUG: Reading base alignment: /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_100/A_100_5/hmmbuild.input.ye3we19d.fasta. [18:44:09] alignment.py (line 615): DEBUG: Relabeling 2156 (2156) with 2156 labels. [18:44:09] exhaustive.py (line 182): DEBUG: Merging alignment subset into placement subset for chunk 4: A_100_5. [18:44:09] alignment.py (line 727): DEBUG: Merging started ... [18:44:09] alignment.py (line 834): DEBUG: Merging finished ... [18:44:09] problem.py (line 246): DEBUG: Reading /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_100/A_100_0/hmmbuild.input.sngnjgfm.fasta [] and relabeling it based on 2122 orig column labels. [18:44:09] alignment.py (line 543): DEBUG: Reading base alignment: /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_100/A_100_0/hmmbuild.input.sngnjgfm.fasta. [18:44:09] alignment.py (line 615): DEBUG: Relabeling 2122 (2122) with 2122 labels. [18:44:09] exhaustive.py (line 182): DEBUG: Merging alignment subset into placement subset for chunk 5: A_100_0. [18:44:09] alignment.py (line 727): DEBUG: Merging started ... [18:44:09] alignment.py (line 834): DEBUG: Merging finished ... [18:44:09] problem.py (line 246): DEBUG: Reading /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_100/A_100_1/hmmbuild.input.3_hi9_qd.fasta [] and relabeling it based on 2101 orig column labels. [18:44:09] alignment.py (line 543): DEBUG: Reading base alignment: /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_100/A_100_1/hmmbuild.input.3_hi9_qd.fasta. [18:44:09] alignment.py (line 615): DEBUG: Relabeling 2101 (2101) with 2101 labels. [18:44:09] exhaustive.py (line 182): DEBUG: Merging alignment subset into placement subset for chunk 5: A_100_1. [18:44:09] alignment.py (line 727): DEBUG: Merging started ... [18:44:09] alignment.py (line 834): DEBUG: Merging finished ... [18:44:09] problem.py (line 246): DEBUG: Reading /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_100/A_100_2/hmmbuild.input.0we6gl60.fasta [] and relabeling it based on 2062 orig column labels. [18:44:09] alignment.py (line 543): DEBUG: Reading base alignment: /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_100/A_100_2/hmmbuild.input.0we6gl60.fasta. [18:44:09] alignment.py (line 615): DEBUG: Relabeling 2062 (2062) with 2062 labels. [18:44:09] exhaustive.py (line 182): DEBUG: Merging alignment subset into placement subset for chunk 5: A_100_2. [18:44:09] alignment.py (line 727): DEBUG: Merging started ... [18:44:09] alignment.py (line 834): DEBUG: Merging finished ... [18:44:09] problem.py (line 246): DEBUG: Reading /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_100/A_100_3/hmmbuild.input.6a32m7gn.fasta [] and relabeling it based on 2108 orig column labels. [18:44:09] alignment.py (line 543): DEBUG: Reading base alignment: /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_100/A_100_3/hmmbuild.input.6a32m7gn.fasta. [18:44:09] alignment.py (line 615): DEBUG: Relabeling 2108 (2108) with 2108 labels. [18:44:09] exhaustive.py (line 182): DEBUG: Merging alignment subset into placement subset for chunk 5: A_100_3. [18:44:09] alignment.py (line 727): DEBUG: Merging started ... [18:44:09] alignment.py (line 834): DEBUG: Merging finished ... [18:44:09] problem.py (line 246): DEBUG: Reading /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_100/A_100_4/hmmbuild.input.oz1p6lho.fasta [] and relabeling it based on 2134 orig column labels. [18:44:09] alignment.py (line 543): DEBUG: Reading base alignment: /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_100/A_100_4/hmmbuild.input.oz1p6lho.fasta. [18:44:09] alignment.py (line 615): DEBUG: Relabeling 2134 (2134) with 2134 labels. [18:44:09] exhaustive.py (line 182): DEBUG: Merging alignment subset into placement subset for chunk 5: A_100_4. [18:44:09] alignment.py (line 727): DEBUG: Merging started ... [18:44:09] alignment.py (line 834): DEBUG: Merging finished ... [18:44:09] problem.py (line 246): DEBUG: Reading /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_100/A_100_5/hmmbuild.input.ye3we19d.fasta [] and relabeling it based on 2156 orig column labels. [18:44:09] alignment.py (line 543): DEBUG: Reading base alignment: /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_100/A_100_5/hmmbuild.input.ye3we19d.fasta. [18:44:09] alignment.py (line 615): DEBUG: Relabeling 2156 (2156) with 2156 labels. [18:44:09] exhaustive.py (line 182): DEBUG: Merging alignment subset into placement subset for chunk 5: A_100_5. [18:44:09] alignment.py (line 727): DEBUG: Merging started ... [18:44:09] alignment.py (line 834): DEBUG: Merging finished ... [18:44:09] problem.py (line 246): DEBUG: Reading /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_100/A_100_0/hmmbuild.input.sngnjgfm.fasta [] and relabeling it based on 2122 orig column labels. [18:44:09] alignment.py (line 543): DEBUG: Reading base alignment: /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_100/A_100_0/hmmbuild.input.sngnjgfm.fasta. [18:44:09] alignment.py (line 615): DEBUG: Relabeling 2122 (2122) with 2122 labels. [18:44:09] exhaustive.py (line 182): DEBUG: Merging alignment subset into placement subset for chunk 6: A_100_0. [18:44:09] alignment.py (line 727): DEBUG: Merging started ... [18:44:09] alignment.py (line 834): DEBUG: Merging finished ... [18:44:09] problem.py (line 246): DEBUG: Reading /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_100/A_100_1/hmmbuild.input.3_hi9_qd.fasta [] and relabeling it based on 2101 orig column labels. [18:44:09] alignment.py (line 543): DEBUG: Reading base alignment: /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_100/A_100_1/hmmbuild.input.3_hi9_qd.fasta. [18:44:09] alignment.py (line 615): DEBUG: Relabeling 2101 (2101) with 2101 labels. [18:44:09] exhaustive.py (line 182): DEBUG: Merging alignment subset into placement subset for chunk 6: A_100_1. [18:44:09] alignment.py (line 727): DEBUG: Merging started ... [18:44:09] alignment.py (line 834): DEBUG: Merging finished ... [18:44:09] problem.py (line 246): DEBUG: Reading /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_100/A_100_2/hmmbuild.input.0we6gl60.fasta [] and relabeling it based on 2062 orig column labels. [18:44:09] alignment.py (line 543): DEBUG: Reading base alignment: /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_100/A_100_2/hmmbuild.input.0we6gl60.fasta. [18:44:09] alignment.py (line 615): DEBUG: Relabeling 2062 (2062) with 2062 labels. [18:44:09] exhaustive.py (line 182): DEBUG: Merging alignment subset into placement subset for chunk 6: A_100_2. [18:44:09] alignment.py (line 727): DEBUG: Merging started ... [18:44:09] alignment.py (line 834): DEBUG: Merging finished ... [18:44:09] problem.py (line 246): DEBUG: Reading /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_100/A_100_3/hmmbuild.input.6a32m7gn.fasta [] and relabeling it based on 2108 orig column labels. [18:44:09] alignment.py (line 543): DEBUG: Reading base alignment: /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_100/A_100_3/hmmbuild.input.6a32m7gn.fasta. [18:44:09] alignment.py (line 615): DEBUG: Relabeling 2108 (2108) with 2108 labels. [18:44:09] exhaustive.py (line 182): DEBUG: Merging alignment subset into placement subset for chunk 6: A_100_3. [18:44:09] alignment.py (line 727): DEBUG: Merging started ... [18:44:09] alignment.py (line 834): DEBUG: Merging finished ... [18:44:09] problem.py (line 246): DEBUG: Reading /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_100/A_100_4/hmmbuild.input.oz1p6lho.fasta [] and relabeling it based on 2134 orig column labels. [18:44:09] alignment.py (line 543): DEBUG: Reading base alignment: /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_100/A_100_4/hmmbuild.input.oz1p6lho.fasta. [18:44:09] alignment.py (line 615): DEBUG: Relabeling 2134 (2134) with 2134 labels. [18:44:09] exhaustive.py (line 182): DEBUG: Merging alignment subset into placement subset for chunk 6: A_100_4. [18:44:09] alignment.py (line 727): DEBUG: Merging started ... [18:44:09] alignment.py (line 834): DEBUG: Merging finished ... [18:44:09] problem.py (line 246): DEBUG: Reading /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_100/A_100_5/hmmbuild.input.ye3we19d.fasta [] and relabeling it based on 2156 orig column labels. [18:44:09] alignment.py (line 543): DEBUG: Reading base alignment: /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_100/A_100_5/hmmbuild.input.ye3we19d.fasta. [18:44:09] alignment.py (line 615): DEBUG: Relabeling 2156 (2156) with 2156 labels. [18:44:09] exhaustive.py (line 182): DEBUG: Merging alignment subset into placement subset for chunk 6: A_100_5. [18:44:09] alignment.py (line 727): DEBUG: Merging started ... [18:44:09] alignment.py (line 834): DEBUG: Merging finished ... [18:44:09] problem.py (line 246): DEBUG: Reading /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_100/A_100_0/hmmbuild.input.sngnjgfm.fasta [] and relabeling it based on 2122 orig column labels. [18:44:09] alignment.py (line 543): DEBUG: Reading base alignment: /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_100/A_100_0/hmmbuild.input.sngnjgfm.fasta. [18:44:09] alignment.py (line 615): DEBUG: Relabeling 2122 (2122) with 2122 labels. [18:44:09] exhaustive.py (line 182): DEBUG: Merging alignment subset into placement subset for chunk 7: A_100_0. [18:44:09] alignment.py (line 727): DEBUG: Merging started ... [18:44:09] alignment.py (line 834): DEBUG: Merging finished ... [18:44:09] problem.py (line 246): DEBUG: Reading /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_100/A_100_1/hmmbuild.input.3_hi9_qd.fasta [] and relabeling it based on 2101 orig column labels. [18:44:09] alignment.py (line 543): DEBUG: Reading base alignment: /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_100/A_100_1/hmmbuild.input.3_hi9_qd.fasta. [18:44:09] alignment.py (line 615): DEBUG: Relabeling 2101 (2101) with 2101 labels. [18:44:09] exhaustive.py (line 182): DEBUG: Merging alignment subset into placement subset for chunk 7: A_100_1. [18:44:09] alignment.py (line 727): DEBUG: Merging started ... [18:44:09] alignment.py (line 834): DEBUG: Merging finished ... [18:44:09] problem.py (line 246): DEBUG: Reading /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_100/A_100_2/hmmbuild.input.0we6gl60.fasta [] and relabeling it based on 2062 orig column labels. [18:44:09] alignment.py (line 543): DEBUG: Reading base alignment: /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_100/A_100_2/hmmbuild.input.0we6gl60.fasta. [18:44:09] alignment.py (line 615): DEBUG: Relabeling 2062 (2062) with 2062 labels. [18:44:09] exhaustive.py (line 182): DEBUG: Merging alignment subset into placement subset for chunk 7: A_100_2. [18:44:09] alignment.py (line 727): DEBUG: Merging started ... [18:44:09] alignment.py (line 834): DEBUG: Merging finished ... [18:44:09] problem.py (line 246): DEBUG: Reading /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_100/A_100_3/hmmbuild.input.6a32m7gn.fasta [] and relabeling it based on 2108 orig column labels. [18:44:09] alignment.py (line 543): DEBUG: Reading base alignment: /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_100/A_100_3/hmmbuild.input.6a32m7gn.fasta. [18:44:09] alignment.py (line 615): DEBUG: Relabeling 2108 (2108) with 2108 labels. [18:44:09] exhaustive.py (line 182): DEBUG: Merging alignment subset into placement subset for chunk 7: A_100_3. [18:44:09] alignment.py (line 727): DEBUG: Merging started ... [18:44:09] alignment.py (line 834): DEBUG: Merging finished ... [18:44:09] problem.py (line 246): DEBUG: Reading /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_100/A_100_4/hmmbuild.input.oz1p6lho.fasta [] and relabeling it based on 2134 orig column labels. [18:44:09] alignment.py (line 543): DEBUG: Reading base alignment: /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_100/A_100_4/hmmbuild.input.oz1p6lho.fasta. [18:44:09] alignment.py (line 615): DEBUG: Relabeling 2134 (2134) with 2134 labels. [18:44:09] exhaustive.py (line 182): DEBUG: Merging alignment subset into placement subset for chunk 7: A_100_4. [18:44:09] alignment.py (line 727): DEBUG: Merging started ... [18:44:09] alignment.py (line 834): DEBUG: Merging finished ... [18:44:09] problem.py (line 246): DEBUG: Reading /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_100/A_100_5/hmmbuild.input.ye3we19d.fasta [] and relabeling it based on 2156 orig column labels. [18:44:09] alignment.py (line 543): DEBUG: Reading base alignment: /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_100/A_100_5/hmmbuild.input.ye3we19d.fasta. [18:44:09] alignment.py (line 615): DEBUG: Relabeling 2156 (2156) with 2156 labels. [18:44:09] exhaustive.py (line 182): DEBUG: Merging alignment subset into placement subset for chunk 7: A_100_5. [18:44:09] alignment.py (line 727): DEBUG: Merging started ... [18:44:09] alignment.py (line 834): DEBUG: Merging finished ... [18:44:09] alignment.py (line 203): DEBUG: Writing alignment of type with length 0 to file /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_100/pplacer.extended.0.3u2bad8z.fasta [18:44:09] alignment.py (line 203): DEBUG: Writing alignment of type with length 4011 to file /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_100/pplacer.backbone.9qfw3hyh.fasta [18:44:09] alignment.py (line 203): DEBUG: Writing alignment of type with length 0 to file /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_100/pplacer.extended.1.x434fyut.fasta [18:44:09] alignment.py (line 203): DEBUG: Writing alignment of type with length 4011 to file /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_100/pplacer.backbone.a0vt6yf5.fasta [18:44:09] alignment.py (line 203): DEBUG: Writing alignment of type with length 0 to file /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_100/pplacer.extended.2.0v_7n5sv.fasta [18:44:09] alignment.py (line 203): DEBUG: Writing alignment of type with length 4011 to file /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_100/pplacer.backbone.y_f8z2h3.fasta [18:44:09] alignment.py (line 203): DEBUG: Writing alignment of type with length 0 to file /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_100/pplacer.extended.3.76lxsu84.fasta [18:44:09] alignment.py (line 203): DEBUG: Writing alignment of type with length 4011 to file /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_100/pplacer.backbone.s4zs9nmf.fasta [18:44:09] alignment.py (line 203): DEBUG: Writing alignment of type with length 0 to file /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_100/pplacer.extended.4.e3wta__k.fasta [18:44:09] alignment.py (line 203): DEBUG: Writing alignment of type with length 4011 to file /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_100/pplacer.backbone.owoe2wqw.fasta [18:44:09] alignment.py (line 203): DEBUG: Writing alignment of type with length 0 to file /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_100/pplacer.extended.5.x57fqrg9.fasta [18:44:09] alignment.py (line 203): DEBUG: Writing alignment of type with length 4011 to file /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_100/pplacer.backbone.fh33l2el.fasta [18:44:09] alignment.py (line 203): DEBUG: Writing alignment of type with length 0 to file /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_100/pplacer.extended.6.lfq9tcf5.fasta [18:44:09] alignment.py (line 203): DEBUG: Writing alignment of type with length 4011 to file /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_100/pplacer.backbone.sxd5wh4o.fasta [18:44:09] alignment.py (line 203): DEBUG: Writing alignment of type with length 0 to file /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_100/pplacer.extended.7.la4c6aee.fasta [18:44:09] alignment.py (line 203): DEBUG: Writing alignment of type with length 4011 to file /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_100/pplacer.backbone.hywxn7dy.fasta [18:44:09] exhaustive.py (line 151): INFO: Merging sub-alignments for placement problem : P_101. [18:44:09] problem.py (line 246): DEBUG: Reading /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_101/A_101_0/hmmbuild.input.2cm1vcy7.fasta [] and relabeling it based on 2105 orig column labels. [18:44:09] alignment.py (line 543): DEBUG: Reading base alignment: /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_101/A_101_0/hmmbuild.input.2cm1vcy7.fasta. [18:44:09] alignment.py (line 615): DEBUG: Relabeling 2105 (2105) with 2105 labels. [18:44:09] exhaustive.py (line 182): DEBUG: Merging alignment subset into placement subset for chunk 0: A_101_0. [18:44:09] alignment.py (line 727): DEBUG: Merging started ... [18:44:09] alignment.py (line 834): DEBUG: Merging finished ... [18:44:09] problem.py (line 246): DEBUG: Reading /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_101/A_101_1/hmmbuild.input.3bt8adkz.fasta [] and relabeling it based on 2065 orig column labels. [18:44:09] alignment.py (line 543): DEBUG: Reading base alignment: /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_101/A_101_1/hmmbuild.input.3bt8adkz.fasta. [18:44:09] alignment.py (line 615): DEBUG: Relabeling 2065 (2065) with 2065 labels. [18:44:09] exhaustive.py (line 182): DEBUG: Merging alignment subset into placement subset for chunk 0: A_101_1. [18:44:09] alignment.py (line 727): DEBUG: Merging started ... [18:44:09] alignment.py (line 834): DEBUG: Merging finished ... [18:44:09] problem.py (line 246): DEBUG: Reading /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_101/A_101_2/hmmbuild.input.n0sh5jkb.fasta [] and relabeling it based on 2013 orig column labels. [18:44:09] alignment.py (line 543): DEBUG: Reading base alignment: /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_101/A_101_2/hmmbuild.input.n0sh5jkb.fasta. [18:44:09] alignment.py (line 615): DEBUG: Relabeling 2013 (2013) with 2013 labels. [18:44:09] exhaustive.py (line 182): DEBUG: Merging alignment subset into placement subset for chunk 0: A_101_2. [18:44:09] alignment.py (line 727): DEBUG: Merging started ... [18:44:09] alignment.py (line 834): DEBUG: Merging finished ... [18:44:09] problem.py (line 246): DEBUG: Reading /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_101/A_101_3/hmmbuild.input.0jwrlgmp.fasta [] and relabeling it based on 2202 orig column labels. [18:44:09] alignment.py (line 543): DEBUG: Reading base alignment: /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_101/A_101_3/hmmbuild.input.0jwrlgmp.fasta. [18:44:09] alignment.py (line 615): DEBUG: Relabeling 2202 (2202) with 2202 labels. [18:44:09] exhaustive.py (line 182): DEBUG: Merging alignment subset into placement subset for chunk 0: A_101_3. [18:44:09] alignment.py (line 727): DEBUG: Merging started ... [18:44:09] alignment.py (line 834): DEBUG: Merging finished ... [18:44:09] problem.py (line 246): DEBUG: Reading /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_101/A_101_4/hmmbuild.input.jeudw0lr.fasta [] and relabeling it based on 2106 orig column labels. [18:44:09] alignment.py (line 543): DEBUG: Reading base alignment: /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_101/A_101_4/hmmbuild.input.jeudw0lr.fasta. [18:44:09] alignment.py (line 615): DEBUG: Relabeling 2106 (2106) with 2106 labels. [18:44:09] exhaustive.py (line 182): DEBUG: Merging alignment subset into placement subset for chunk 0: A_101_4. [18:44:09] alignment.py (line 727): DEBUG: Merging started ... [18:44:09] alignment.py (line 834): DEBUG: Merging finished ... [18:44:09] problem.py (line 246): DEBUG: Reading /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_101/A_101_5/hmmbuild.input.ok39j64d.fasta [] and relabeling it based on 2105 orig column labels. [18:44:09] alignment.py (line 543): DEBUG: Reading base alignment: /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_101/A_101_5/hmmbuild.input.ok39j64d.fasta. [18:44:09] alignment.py (line 615): DEBUG: Relabeling 2105 (2105) with 2105 labels. [18:44:09] exhaustive.py (line 182): DEBUG: Merging alignment subset into placement subset for chunk 0: A_101_5. [18:44:09] alignment.py (line 727): DEBUG: Merging started ... [18:44:09] alignment.py (line 834): DEBUG: Merging finished ... [18:44:09] problem.py (line 246): DEBUG: Reading /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_101/A_101_0/hmmbuild.input.2cm1vcy7.fasta [] and relabeling it based on 2105 orig column labels. [18:44:09] alignment.py (line 543): DEBUG: Reading base alignment: /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_101/A_101_0/hmmbuild.input.2cm1vcy7.fasta. [18:44:09] alignment.py (line 615): DEBUG: Relabeling 2105 (2105) with 2105 labels. [18:44:09] exhaustive.py (line 182): DEBUG: Merging alignment subset into placement subset for chunk 1: A_101_0. [18:44:09] alignment.py (line 727): DEBUG: Merging started ... [18:44:09] alignment.py (line 834): DEBUG: Merging finished ... [18:44:09] problem.py (line 246): DEBUG: Reading /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_101/A_101_1/hmmbuild.input.3bt8adkz.fasta [] and relabeling it based on 2065 orig column labels. [18:44:09] alignment.py (line 543): DEBUG: Reading base alignment: /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_101/A_101_1/hmmbuild.input.3bt8adkz.fasta. [18:44:09] alignment.py (line 615): DEBUG: Relabeling 2065 (2065) with 2065 labels. [18:44:09] exhaustive.py (line 182): DEBUG: Merging alignment subset into placement subset for chunk 1: A_101_1. [18:44:09] alignment.py (line 727): DEBUG: Merging started ... [18:44:09] alignment.py (line 834): DEBUG: Merging finished ... [18:44:09] problem.py (line 246): DEBUG: Reading /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_101/A_101_2/hmmbuild.input.n0sh5jkb.fasta [] and relabeling it based on 2013 orig column labels. [18:44:09] alignment.py (line 543): DEBUG: Reading base alignment: /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_101/A_101_2/hmmbuild.input.n0sh5jkb.fasta. [18:44:09] alignment.py (line 615): DEBUG: Relabeling 2013 (2013) with 2013 labels. [18:44:09] exhaustive.py (line 182): DEBUG: Merging alignment subset into placement subset for chunk 1: A_101_2. [18:44:09] alignment.py (line 727): DEBUG: Merging started ... [18:44:09] alignment.py (line 834): DEBUG: Merging finished ... [18:44:09] problem.py (line 246): DEBUG: Reading /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_101/A_101_3/hmmbuild.input.0jwrlgmp.fasta [] and relabeling it based on 2202 orig column labels. [18:44:09] alignment.py (line 543): DEBUG: Reading base alignment: /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_101/A_101_3/hmmbuild.input.0jwrlgmp.fasta. [18:44:09] alignment.py (line 615): DEBUG: Relabeling 2202 (2202) with 2202 labels. [18:44:09] exhaustive.py (line 182): DEBUG: Merging alignment subset into placement subset for chunk 1: A_101_3. [18:44:09] alignment.py (line 727): DEBUG: Merging started ... [18:44:09] alignment.py (line 834): DEBUG: Merging finished ... [18:44:09] problem.py (line 246): DEBUG: Reading /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_101/A_101_4/hmmbuild.input.jeudw0lr.fasta [] and relabeling it based on 2106 orig column labels. [18:44:09] alignment.py (line 543): DEBUG: Reading base alignment: /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_101/A_101_4/hmmbuild.input.jeudw0lr.fasta. [18:44:09] alignment.py (line 615): DEBUG: Relabeling 2106 (2106) with 2106 labels. [18:44:09] exhaustive.py (line 182): DEBUG: Merging alignment subset into placement subset for chunk 1: A_101_4. [18:44:09] alignment.py (line 727): DEBUG: Merging started ... [18:44:09] alignment.py (line 834): DEBUG: Merging finished ... [18:44:09] problem.py (line 246): DEBUG: Reading /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_101/A_101_5/hmmbuild.input.ok39j64d.fasta [] and relabeling it based on 2105 orig column labels. [18:44:09] alignment.py (line 543): DEBUG: Reading base alignment: /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_101/A_101_5/hmmbuild.input.ok39j64d.fasta. [18:44:09] alignment.py (line 615): DEBUG: Relabeling 2105 (2105) with 2105 labels. [18:44:09] exhaustive.py (line 182): DEBUG: Merging alignment subset into placement subset for chunk 1: A_101_5. [18:44:09] alignment.py (line 727): DEBUG: Merging started ... [18:44:09] alignment.py (line 834): DEBUG: Merging finished ... [18:44:09] problem.py (line 246): DEBUG: Reading /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_101/A_101_0/hmmbuild.input.2cm1vcy7.fasta [] and relabeling it based on 2105 orig column labels. [18:44:09] alignment.py (line 543): DEBUG: Reading base alignment: /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_101/A_101_0/hmmbuild.input.2cm1vcy7.fasta. [18:44:09] alignment.py (line 615): DEBUG: Relabeling 2105 (2105) with 2105 labels. [18:44:09] exhaustive.py (line 182): DEBUG: Merging alignment subset into placement subset for chunk 2: A_101_0. [18:44:09] alignment.py (line 727): DEBUG: Merging started ... [18:44:09] alignment.py (line 834): DEBUG: Merging finished ... [18:44:09] problem.py (line 246): DEBUG: Reading /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_101/A_101_1/hmmbuild.input.3bt8adkz.fasta [] and relabeling it based on 2065 orig column labels. [18:44:09] alignment.py (line 543): DEBUG: Reading base alignment: /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_101/A_101_1/hmmbuild.input.3bt8adkz.fasta. [18:44:09] alignment.py (line 615): DEBUG: Relabeling 2065 (2065) with 2065 labels. [18:44:09] exhaustive.py (line 182): DEBUG: Merging alignment subset into placement subset for chunk 2: A_101_1. [18:44:09] alignment.py (line 727): DEBUG: Merging started ... [18:44:09] alignment.py (line 834): DEBUG: Merging finished ... [18:44:09] problem.py (line 246): DEBUG: Reading /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_101/A_101_2/hmmbuild.input.n0sh5jkb.fasta [] and relabeling it based on 2013 orig column labels. [18:44:09] alignment.py (line 543): DEBUG: Reading base alignment: /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_101/A_101_2/hmmbuild.input.n0sh5jkb.fasta. [18:44:09] alignment.py (line 615): DEBUG: Relabeling 2013 (2013) with 2013 labels. [18:44:09] exhaustive.py (line 182): DEBUG: Merging alignment subset into placement subset for chunk 2: A_101_2. [18:44:09] alignment.py (line 727): DEBUG: Merging started ... [18:44:09] alignment.py (line 834): DEBUG: Merging finished ... [18:44:09] problem.py (line 246): DEBUG: Reading /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_101/A_101_3/hmmbuild.input.0jwrlgmp.fasta [] and relabeling it based on 2202 orig column labels. [18:44:09] alignment.py (line 543): DEBUG: Reading base alignment: /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_101/A_101_3/hmmbuild.input.0jwrlgmp.fasta. [18:44:09] alignment.py (line 615): DEBUG: Relabeling 2202 (2202) with 2202 labels. [18:44:09] exhaustive.py (line 182): DEBUG: Merging alignment subset into placement subset for chunk 2: A_101_3. [18:44:09] alignment.py (line 727): DEBUG: Merging started ... [18:44:09] alignment.py (line 834): DEBUG: Merging finished ... [18:44:09] problem.py (line 246): DEBUG: Reading /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_101/A_101_4/hmmbuild.input.jeudw0lr.fasta [] and relabeling it based on 2106 orig column labels. [18:44:09] alignment.py (line 543): DEBUG: Reading base alignment: /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_101/A_101_4/hmmbuild.input.jeudw0lr.fasta. [18:44:09] alignment.py (line 615): DEBUG: Relabeling 2106 (2106) with 2106 labels. [18:44:09] exhaustive.py (line 182): DEBUG: Merging alignment subset into placement subset for chunk 2: A_101_4. [18:44:09] alignment.py (line 727): DEBUG: Merging started ... [18:44:09] alignment.py (line 834): DEBUG: Merging finished ... [18:44:09] problem.py (line 246): DEBUG: Reading /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_101/A_101_5/hmmbuild.input.ok39j64d.fasta [] and relabeling it based on 2105 orig column labels. [18:44:09] alignment.py (line 543): DEBUG: Reading base alignment: /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_101/A_101_5/hmmbuild.input.ok39j64d.fasta. [18:44:09] alignment.py (line 615): DEBUG: Relabeling 2105 (2105) with 2105 labels. [18:44:09] exhaustive.py (line 182): DEBUG: Merging alignment subset into placement subset for chunk 2: A_101_5. [18:44:09] alignment.py (line 727): DEBUG: Merging started ... [18:44:09] alignment.py (line 834): DEBUG: Merging finished ... [18:44:09] problem.py (line 246): DEBUG: Reading /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_101/A_101_0/hmmbuild.input.2cm1vcy7.fasta [] and relabeling it based on 2105 orig column labels. [18:44:09] alignment.py (line 543): DEBUG: Reading base alignment: /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_101/A_101_0/hmmbuild.input.2cm1vcy7.fasta. [18:44:09] alignment.py (line 615): DEBUG: Relabeling 2105 (2105) with 2105 labels. [18:44:09] exhaustive.py (line 182): DEBUG: Merging alignment subset into placement subset for chunk 3: A_101_0. [18:44:09] alignment.py (line 727): DEBUG: Merging started ... [18:44:09] alignment.py (line 834): DEBUG: Merging finished ... [18:44:09] problem.py (line 246): DEBUG: Reading /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_101/A_101_1/hmmbuild.input.3bt8adkz.fasta [] and relabeling it based on 2065 orig column labels. [18:44:09] alignment.py (line 543): DEBUG: Reading base alignment: /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_101/A_101_1/hmmbuild.input.3bt8adkz.fasta. [18:44:09] alignment.py (line 615): DEBUG: Relabeling 2065 (2065) with 2065 labels. [18:44:09] exhaustive.py (line 182): DEBUG: Merging alignment subset into placement subset for chunk 3: A_101_1. [18:44:09] alignment.py (line 727): DEBUG: Merging started ... [18:44:09] alignment.py (line 834): DEBUG: Merging finished ... [18:44:09] problem.py (line 246): DEBUG: Reading /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_101/A_101_2/hmmbuild.input.n0sh5jkb.fasta [] and relabeling it based on 2013 orig column labels. [18:44:09] alignment.py (line 543): DEBUG: Reading base alignment: /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_101/A_101_2/hmmbuild.input.n0sh5jkb.fasta. [18:44:10] alignment.py (line 615): DEBUG: Relabeling 2013 (2013) with 2013 labels. [18:44:10] exhaustive.py (line 182): DEBUG: Merging alignment subset into placement subset for chunk 3: A_101_2. [18:44:10] alignment.py (line 727): DEBUG: Merging started ... [18:44:10] alignment.py (line 834): DEBUG: Merging finished ... [18:44:10] problem.py (line 246): DEBUG: Reading /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_101/A_101_3/hmmbuild.input.0jwrlgmp.fasta [] and relabeling it based on 2202 orig column labels. [18:44:10] alignment.py (line 543): DEBUG: Reading base alignment: /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_101/A_101_3/hmmbuild.input.0jwrlgmp.fasta. [18:44:10] alignment.py (line 615): DEBUG: Relabeling 2202 (2202) with 2202 labels. [18:44:10] exhaustive.py (line 182): DEBUG: Merging alignment subset into placement subset for chunk 3: A_101_3. [18:44:10] alignment.py (line 727): DEBUG: Merging started ... [18:44:10] alignment.py (line 834): DEBUG: Merging finished ... [18:44:10] problem.py (line 246): DEBUG: Reading /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_101/A_101_4/hmmbuild.input.jeudw0lr.fasta [] and relabeling it based on 2106 orig column labels. [18:44:10] alignment.py (line 543): DEBUG: Reading base alignment: /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_101/A_101_4/hmmbuild.input.jeudw0lr.fasta. [18:44:10] alignment.py (line 615): DEBUG: Relabeling 2106 (2106) with 2106 labels. [18:44:10] exhaustive.py (line 182): DEBUG: Merging alignment subset into placement subset for chunk 3: A_101_4. [18:44:10] alignment.py (line 727): DEBUG: Merging started ... [18:44:10] alignment.py (line 834): DEBUG: Merging finished ... [18:44:10] problem.py (line 246): DEBUG: Reading /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_101/A_101_5/hmmbuild.input.ok39j64d.fasta [] and relabeling it based on 2105 orig column labels. [18:44:10] alignment.py (line 543): DEBUG: Reading base alignment: /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_101/A_101_5/hmmbuild.input.ok39j64d.fasta. [18:44:10] alignment.py (line 615): DEBUG: Relabeling 2105 (2105) with 2105 labels. [18:44:10] exhaustive.py (line 182): DEBUG: Merging alignment subset into placement subset for chunk 3: A_101_5. [18:44:10] alignment.py (line 727): DEBUG: Merging started ... [18:44:10] alignment.py (line 834): DEBUG: Merging finished ... [18:44:10] problem.py (line 246): DEBUG: Reading /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_101/A_101_0/hmmbuild.input.2cm1vcy7.fasta [] and relabeling it based on 2105 orig column labels. [18:44:10] alignment.py (line 543): DEBUG: Reading base alignment: /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_101/A_101_0/hmmbuild.input.2cm1vcy7.fasta. [18:44:10] alignment.py (line 615): DEBUG: Relabeling 2105 (2105) with 2105 labels. [18:44:10] exhaustive.py (line 182): DEBUG: Merging alignment subset into placement subset for chunk 4: A_101_0. [18:44:10] alignment.py (line 727): DEBUG: Merging started ... [18:44:10] alignment.py (line 834): DEBUG: Merging finished ... [18:44:10] problem.py (line 246): DEBUG: Reading /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_101/A_101_1/hmmbuild.input.3bt8adkz.fasta [] and relabeling it based on 2065 orig column labels. [18:44:10] alignment.py (line 543): DEBUG: Reading base alignment: /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_101/A_101_1/hmmbuild.input.3bt8adkz.fasta. [18:44:10] alignment.py (line 615): DEBUG: Relabeling 2065 (2065) with 2065 labels. [18:44:10] exhaustive.py (line 182): DEBUG: Merging alignment subset into placement subset for chunk 4: A_101_1. [18:44:10] alignment.py (line 727): DEBUG: Merging started ... [18:44:10] alignment.py (line 834): DEBUG: Merging finished ... [18:44:10] problem.py (line 246): DEBUG: Reading /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_101/A_101_2/hmmbuild.input.n0sh5jkb.fasta [] and relabeling it based on 2013 orig column labels. [18:44:10] alignment.py (line 543): DEBUG: Reading base alignment: /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_101/A_101_2/hmmbuild.input.n0sh5jkb.fasta. [18:44:10] alignment.py (line 615): DEBUG: Relabeling 2013 (2013) with 2013 labels. [18:44:10] exhaustive.py (line 182): DEBUG: Merging alignment subset into placement subset for chunk 4: A_101_2. [18:44:10] alignment.py (line 727): DEBUG: Merging started ... [18:44:10] alignment.py (line 834): DEBUG: Merging finished ... [18:44:10] problem.py (line 246): DEBUG: Reading /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_101/A_101_3/hmmbuild.input.0jwrlgmp.fasta [] and relabeling it based on 2202 orig column labels. [18:44:10] alignment.py (line 543): DEBUG: Reading base alignment: /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_101/A_101_3/hmmbuild.input.0jwrlgmp.fasta. [18:44:10] alignment.py (line 615): DEBUG: Relabeling 2202 (2202) with 2202 labels. [18:44:10] exhaustive.py (line 182): DEBUG: Merging alignment subset into placement subset for chunk 4: A_101_3. [18:44:10] alignment.py (line 727): DEBUG: Merging started ... [18:44:10] alignment.py (line 834): DEBUG: Merging finished ... [18:44:10] problem.py (line 246): DEBUG: Reading /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_101/A_101_4/hmmbuild.input.jeudw0lr.fasta [] and relabeling it based on 2106 orig column labels. [18:44:10] alignment.py (line 543): DEBUG: Reading base alignment: /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_101/A_101_4/hmmbuild.input.jeudw0lr.fasta. [18:44:10] alignment.py (line 615): DEBUG: Relabeling 2106 (2106) with 2106 labels. [18:44:10] exhaustive.py (line 182): DEBUG: Merging alignment subset into placement subset for chunk 4: A_101_4. [18:44:10] alignment.py (line 727): DEBUG: Merging started ... [18:44:10] alignment.py (line 834): DEBUG: Merging finished ... [18:44:10] problem.py (line 246): DEBUG: Reading /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_101/A_101_5/hmmbuild.input.ok39j64d.fasta [] and relabeling it based on 2105 orig column labels. [18:44:10] alignment.py (line 543): DEBUG: Reading base alignment: /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_101/A_101_5/hmmbuild.input.ok39j64d.fasta. [18:44:10] alignment.py (line 615): DEBUG: Relabeling 2105 (2105) with 2105 labels. [18:44:10] exhaustive.py (line 182): DEBUG: Merging alignment subset into placement subset for chunk 4: A_101_5. [18:44:10] alignment.py (line 727): DEBUG: Merging started ... [18:44:10] alignment.py (line 834): DEBUG: Merging finished ... [18:44:10] problem.py (line 246): DEBUG: Reading /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_101/A_101_0/hmmbuild.input.2cm1vcy7.fasta [] and relabeling it based on 2105 orig column labels. [18:44:10] alignment.py (line 543): DEBUG: Reading base alignment: /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_101/A_101_0/hmmbuild.input.2cm1vcy7.fasta. [18:44:10] alignment.py (line 615): DEBUG: Relabeling 2105 (2105) with 2105 labels. [18:44:10] exhaustive.py (line 182): DEBUG: Merging alignment subset into placement subset for chunk 5: A_101_0. [18:44:10] alignment.py (line 727): DEBUG: Merging started ... [18:44:10] alignment.py (line 834): DEBUG: Merging finished ... [18:44:10] problem.py (line 246): DEBUG: Reading /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_101/A_101_1/hmmbuild.input.3bt8adkz.fasta [] and relabeling it based on 2065 orig column labels. [18:44:10] alignment.py (line 543): DEBUG: Reading base alignment: /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_101/A_101_1/hmmbuild.input.3bt8adkz.fasta. [18:44:10] alignment.py (line 615): DEBUG: Relabeling 2065 (2065) with 2065 labels. [18:44:10] exhaustive.py (line 182): DEBUG: Merging alignment subset into placement subset for chunk 5: A_101_1. [18:44:10] alignment.py (line 727): DEBUG: Merging started ... [18:44:10] alignment.py (line 834): DEBUG: Merging finished ... [18:44:10] problem.py (line 246): DEBUG: Reading /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_101/A_101_2/hmmbuild.input.n0sh5jkb.fasta [] and relabeling it based on 2013 orig column labels. [18:44:10] alignment.py (line 543): DEBUG: Reading base alignment: /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_101/A_101_2/hmmbuild.input.n0sh5jkb.fasta. [18:44:10] alignment.py (line 615): DEBUG: Relabeling 2013 (2013) with 2013 labels. [18:44:10] exhaustive.py (line 182): DEBUG: Merging alignment subset into placement subset for chunk 5: A_101_2. [18:44:10] alignment.py (line 727): DEBUG: Merging started ... [18:44:10] alignment.py (line 834): DEBUG: Merging finished ... [18:44:10] problem.py (line 246): DEBUG: Reading /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_101/A_101_3/hmmbuild.input.0jwrlgmp.fasta [] and relabeling it based on 2202 orig column labels. [18:44:10] alignment.py (line 543): DEBUG: Reading base alignment: /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_101/A_101_3/hmmbuild.input.0jwrlgmp.fasta. [18:44:10] alignment.py (line 615): DEBUG: Relabeling 2202 (2202) with 2202 labels. [18:44:10] exhaustive.py (line 182): DEBUG: Merging alignment subset into placement subset for chunk 5: A_101_3. [18:44:10] alignment.py (line 727): DEBUG: Merging started ... [18:44:10] alignment.py (line 834): DEBUG: Merging finished ... [18:44:10] problem.py (line 246): DEBUG: Reading /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_101/A_101_4/hmmbuild.input.jeudw0lr.fasta [] and relabeling it based on 2106 orig column labels. [18:44:10] alignment.py (line 543): DEBUG: Reading base alignment: /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_101/A_101_4/hmmbuild.input.jeudw0lr.fasta. [18:44:10] alignment.py (line 615): DEBUG: Relabeling 2106 (2106) with 2106 labels. [18:44:10] exhaustive.py (line 182): DEBUG: Merging alignment subset into placement subset for chunk 5: A_101_4. [18:44:10] alignment.py (line 727): DEBUG: Merging started ... [18:44:10] alignment.py (line 834): DEBUG: Merging finished ... [18:44:10] problem.py (line 246): DEBUG: Reading /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_101/A_101_5/hmmbuild.input.ok39j64d.fasta [] and relabeling it based on 2105 orig column labels. [18:44:10] alignment.py (line 543): DEBUG: Reading base alignment: /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_101/A_101_5/hmmbuild.input.ok39j64d.fasta. [18:44:10] alignment.py (line 615): DEBUG: Relabeling 2105 (2105) with 2105 labels. [18:44:10] exhaustive.py (line 182): DEBUG: Merging alignment subset into placement subset for chunk 5: A_101_5. [18:44:10] alignment.py (line 727): DEBUG: Merging started ... [18:44:10] alignment.py (line 834): DEBUG: Merging finished ... [18:44:10] problem.py (line 246): DEBUG: Reading /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_101/A_101_0/hmmbuild.input.2cm1vcy7.fasta [] and relabeling it based on 2105 orig column labels. [18:44:10] alignment.py (line 543): DEBUG: Reading base alignment: /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_101/A_101_0/hmmbuild.input.2cm1vcy7.fasta. [18:44:10] alignment.py (line 615): DEBUG: Relabeling 2105 (2105) with 2105 labels. [18:44:10] exhaustive.py (line 182): DEBUG: Merging alignment subset into placement subset for chunk 6: A_101_0. [18:44:10] alignment.py (line 727): DEBUG: Merging started ... [18:44:10] alignment.py (line 834): DEBUG: Merging finished ... [18:44:10] problem.py (line 246): DEBUG: Reading /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_101/A_101_1/hmmbuild.input.3bt8adkz.fasta [] and relabeling it based on 2065 orig column labels. [18:44:10] alignment.py (line 543): DEBUG: Reading base alignment: /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_101/A_101_1/hmmbuild.input.3bt8adkz.fasta. [18:44:10] alignment.py (line 615): DEBUG: Relabeling 2065 (2065) with 2065 labels. [18:44:10] exhaustive.py (line 182): DEBUG: Merging alignment subset into placement subset for chunk 6: A_101_1. [18:44:10] alignment.py (line 727): DEBUG: Merging started ... [18:44:10] alignment.py (line 834): DEBUG: Merging finished ... [18:44:10] problem.py (line 246): DEBUG: Reading /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_101/A_101_2/hmmbuild.input.n0sh5jkb.fasta [] and relabeling it based on 2013 orig column labels. [18:44:10] alignment.py (line 543): DEBUG: Reading base alignment: /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_101/A_101_2/hmmbuild.input.n0sh5jkb.fasta. [18:44:10] alignment.py (line 615): DEBUG: Relabeling 2013 (2013) with 2013 labels. [18:44:10] exhaustive.py (line 182): DEBUG: Merging alignment subset into placement subset for chunk 6: A_101_2. [18:44:10] alignment.py (line 727): DEBUG: Merging started ... [18:44:10] alignment.py (line 834): DEBUG: Merging finished ... [18:44:10] problem.py (line 246): DEBUG: Reading /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_101/A_101_3/hmmbuild.input.0jwrlgmp.fasta [] and relabeling it based on 2202 orig column labels. [18:44:10] alignment.py (line 543): DEBUG: Reading base alignment: /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_101/A_101_3/hmmbuild.input.0jwrlgmp.fasta. [18:44:10] alignment.py (line 615): DEBUG: Relabeling 2202 (2202) with 2202 labels. [18:44:10] exhaustive.py (line 182): DEBUG: Merging alignment subset into placement subset for chunk 6: A_101_3. [18:44:10] alignment.py (line 727): DEBUG: Merging started ... [18:44:10] alignment.py (line 834): DEBUG: Merging finished ... [18:44:10] problem.py (line 246): DEBUG: Reading /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_101/A_101_4/hmmbuild.input.jeudw0lr.fasta [] and relabeling it based on 2106 orig column labels. [18:44:10] alignment.py (line 543): DEBUG: Reading base alignment: /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_101/A_101_4/hmmbuild.input.jeudw0lr.fasta. [18:44:10] alignment.py (line 615): DEBUG: Relabeling 2106 (2106) with 2106 labels. [18:44:10] exhaustive.py (line 182): DEBUG: Merging alignment subset into placement subset for chunk 6: A_101_4. [18:44:10] alignment.py (line 727): DEBUG: Merging started ... [18:44:10] alignment.py (line 834): DEBUG: Merging finished ... [18:44:10] problem.py (line 246): DEBUG: Reading /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_101/A_101_5/hmmbuild.input.ok39j64d.fasta [] and relabeling it based on 2105 orig column labels. [18:44:10] alignment.py (line 543): DEBUG: Reading base alignment: /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_101/A_101_5/hmmbuild.input.ok39j64d.fasta. [18:44:10] alignment.py (line 615): DEBUG: Relabeling 2105 (2105) with 2105 labels. [18:44:10] exhaustive.py (line 182): DEBUG: Merging alignment subset into placement subset for chunk 6: A_101_5. [18:44:10] alignment.py (line 727): DEBUG: Merging started ... [18:44:10] alignment.py (line 834): DEBUG: Merging finished ... [18:44:10] problem.py (line 246): DEBUG: Reading /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_101/A_101_0/hmmbuild.input.2cm1vcy7.fasta [] and relabeling it based on 2105 orig column labels. [18:44:10] alignment.py (line 543): DEBUG: Reading base alignment: /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_101/A_101_0/hmmbuild.input.2cm1vcy7.fasta. [18:44:10] alignment.py (line 615): DEBUG: Relabeling 2105 (2105) with 2105 labels. [18:44:10] exhaustive.py (line 182): DEBUG: Merging alignment subset into placement subset for chunk 7: A_101_0. [18:44:10] alignment.py (line 727): DEBUG: Merging started ... [18:44:10] alignment.py (line 834): DEBUG: Merging finished ... [18:44:10] problem.py (line 246): DEBUG: Reading /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_101/A_101_1/hmmbuild.input.3bt8adkz.fasta [] and relabeling it based on 2065 orig column labels. [18:44:10] alignment.py (line 543): DEBUG: Reading base alignment: /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_101/A_101_1/hmmbuild.input.3bt8adkz.fasta. [18:44:10] alignment.py (line 615): DEBUG: Relabeling 2065 (2065) with 2065 labels. [18:44:10] exhaustive.py (line 182): DEBUG: Merging alignment subset into placement subset for chunk 7: A_101_1. [18:44:10] alignment.py (line 727): DEBUG: Merging started ... [18:44:10] alignment.py (line 834): DEBUG: Merging finished ... [18:44:10] problem.py (line 246): DEBUG: Reading /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_101/A_101_2/hmmbuild.input.n0sh5jkb.fasta [] and relabeling it based on 2013 orig column labels. [18:44:10] alignment.py (line 543): DEBUG: Reading base alignment: /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_101/A_101_2/hmmbuild.input.n0sh5jkb.fasta. [18:44:10] alignment.py (line 615): DEBUG: Relabeling 2013 (2013) with 2013 labels. [18:44:10] exhaustive.py (line 182): DEBUG: Merging alignment subset into placement subset for chunk 7: A_101_2. [18:44:10] alignment.py (line 727): DEBUG: Merging started ... [18:44:10] alignment.py (line 834): DEBUG: Merging finished ... [18:44:10] problem.py (line 246): DEBUG: Reading /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_101/A_101_3/hmmbuild.input.0jwrlgmp.fasta [] and relabeling it based on 2202 orig column labels. [18:44:10] alignment.py (line 543): DEBUG: Reading base alignment: /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_101/A_101_3/hmmbuild.input.0jwrlgmp.fasta. [18:44:10] alignment.py (line 615): DEBUG: Relabeling 2202 (2202) with 2202 labels. [18:44:10] exhaustive.py (line 182): DEBUG: Merging alignment subset into placement subset for chunk 7: A_101_3. [18:44:10] alignment.py (line 727): DEBUG: Merging started ... [18:44:10] alignment.py (line 834): DEBUG: Merging finished ... [18:44:10] problem.py (line 246): DEBUG: Reading /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_101/A_101_4/hmmbuild.input.jeudw0lr.fasta [] and relabeling it based on 2106 orig column labels. [18:44:10] alignment.py (line 543): DEBUG: Reading base alignment: /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_101/A_101_4/hmmbuild.input.jeudw0lr.fasta. [18:44:10] alignment.py (line 615): DEBUG: Relabeling 2106 (2106) with 2106 labels. [18:44:10] exhaustive.py (line 182): DEBUG: Merging alignment subset into placement subset for chunk 7: A_101_4. [18:44:10] alignment.py (line 727): DEBUG: Merging started ... [18:44:10] alignment.py (line 834): DEBUG: Merging finished ... [18:44:10] problem.py (line 246): DEBUG: Reading /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_101/A_101_5/hmmbuild.input.ok39j64d.fasta [] and relabeling it based on 2105 orig column labels. [18:44:10] alignment.py (line 543): DEBUG: Reading base alignment: /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_101/A_101_5/hmmbuild.input.ok39j64d.fasta. [18:44:10] alignment.py (line 615): DEBUG: Relabeling 2105 (2105) with 2105 labels. [18:44:10] exhaustive.py (line 182): DEBUG: Merging alignment subset into placement subset for chunk 7: A_101_5. [18:44:10] alignment.py (line 727): DEBUG: Merging started ... [18:44:10] alignment.py (line 834): DEBUG: Merging finished ... [18:44:10] alignment.py (line 203): DEBUG: Writing alignment of type with length 0 to file /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_101/pplacer.extended.0.bffxt502.fasta [18:44:10] alignment.py (line 203): DEBUG: Writing alignment of type with length 4059 to file /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_101/pplacer.backbone.1dp49zh3.fasta [18:44:10] alignment.py (line 203): DEBUG: Writing alignment of type with length 0 to file /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_101/pplacer.extended.1.8veli_b_.fasta [18:44:10] alignment.py (line 203): DEBUG: Writing alignment of type with length 4059 to file /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_101/pplacer.backbone.gug_3s8h.fasta [18:44:10] alignment.py (line 203): DEBUG: Writing alignment of type with length 0 to file /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_101/pplacer.extended.2.x0ozleod.fasta [18:44:10] alignment.py (line 203): DEBUG: Writing alignment of type with length 4059 to file /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_101/pplacer.backbone.g8tgk1th.fasta [18:44:10] alignment.py (line 203): DEBUG: Writing alignment of type with length 0 to file /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_101/pplacer.extended.3.8ykf46vu.fasta [18:44:10] alignment.py (line 203): DEBUG: Writing alignment of type with length 4059 to file /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_101/pplacer.backbone.kakpehlf.fasta [18:44:10] alignment.py (line 203): DEBUG: Writing alignment of type with length 0 to file /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_101/pplacer.extended.4._jib7s67.fasta [18:44:10] alignment.py (line 203): DEBUG: Writing alignment of type with length 4059 to file /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_101/pplacer.backbone.0ck42z60.fasta [18:44:10] alignment.py (line 203): DEBUG: Writing alignment of type with length 0 to file /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_101/pplacer.extended.5.qwhr9833.fasta [18:44:10] alignment.py (line 203): DEBUG: Writing alignment of type with length 4059 to file /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_101/pplacer.backbone.wcbo8bpt.fasta [18:44:10] alignment.py (line 203): DEBUG: Writing alignment of type with length 0 to file /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_101/pplacer.extended.6.w_hqf58j.fasta [18:44:10] alignment.py (line 203): DEBUG: Writing alignment of type with length 4059 to file /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_101/pplacer.backbone.3xxnc4n8.fasta [18:44:10] alignment.py (line 203): DEBUG: Writing alignment of type with length 0 to file /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_101/pplacer.extended.7.w854d6xr.fasta [18:44:10] alignment.py (line 203): DEBUG: Writing alignment of type with length 4059 to file /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_101/pplacer.backbone.coaeypup.fasta [18:44:10] jobs.py (line 80): DEBUG: Starting pplacer Job with input: backbone_alignment_file:/tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_20/pplacer.backbone.xtqkfk1r.fasta, tree_file:/tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_20/pplacer.tree.9kl4m1kd.tre, info_file:/tmp/qiime2/lisou/data/e44b5e78-31e5-4a0f-9041-494bc3ca2df2/data/raxml-info.txt, extended alignment:/tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_20/pplacer.extended.0.xp45k3qy.fasta, output:/tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_20/pplacer.extended.0.xp45k3qy.jplace [18:44:10] jobs.py (line 106): DEBUG: Invocation of /home/lisou/anaconda3/envs/qiime2-2022.8/bin/pplacer --out-dir /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_20 -j 1 -r /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_20/pplacer.backbone.xtqkfk1r.fasta -s /tmp/qiime2/lisou/data/e44b5e78-31e5-4a0f-9041-494bc3ca2df2/data/raxml-info.txt -t /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_20/pplacer.tree.9kl4m1kd.tre --groups 10 /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_20/pplacer.extended.0.xp45k3qy.fasta [18:44:10] exhaustive.py (line 151): INFO: Merging sub-alignments for placement problem : P_102. [18:44:10] problem.py (line 246): DEBUG: Reading /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_102/A_102_0/hmmbuild.input.g3fnf_u3.fasta [] and relabeling it based on 1992 orig column labels. [18:44:10] alignment.py (line 543): DEBUG: Reading base alignment: /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_102/A_102_0/hmmbuild.input.g3fnf_u3.fasta. Traceback (most recent call last): File "/home/lisou/anaconda3/envs/qiime2-2022.8/lib/python3.8/site-packages/sepp/jobs.py", line 150, in run raise JobError("\n".join([ sepp.scheduler.JobError: The following execution failed: /home/lisou/anaconda3/envs/qiime2-2022.8/bin/pplacer --out-dir /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_10 -j 1 -r /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_10/pplacer.backbone.63ey5yxp.fasta -s /tmp/qiime2/lisou/data/e44b5e78-31e5-4a0f-9041-494bc3ca2df2/data/raxml-info.txt -t /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_10/pplacer.tree.2tinrpd4.tre --groups 10 /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_10/pplacer.extended.0.me_af3bc.fasta No error messages available [18:44:10] jobs.py (line 80): DEBUG: Starting pplacer Job with input: backbone_alignment_file:/tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_20/pplacer.backbone.wyvufk_9.fasta, tree_file:/tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_20/pplacer.tree.2wfouvlt.tre, info_file:/tmp/qiime2/lisou/data/e44b5e78-31e5-4a0f-9041-494bc3ca2df2/data/raxml-info.txt, extended alignment:/tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_20/pplacer.extended.1.hu8hzcpq.fasta, output:/tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_20/pplacer.extended.1.hu8hzcpq.jplace [18:44:10] jobs.py (line 106): DEBUG: Invocation of /home/lisou/anaconda3/envs/qiime2-2022.8/bin/pplacer --out-dir /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_20 -j 1 -r /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_20/pplacer.backbone.wyvufk_9.fasta -s /tmp/qiime2/lisou/data/e44b5e78-31e5-4a0f-9041-494bc3ca2df2/data/raxml-info.txt -t /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_20/pplacer.tree.2wfouvlt.tre --groups 10 /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_20/pplacer.extended.1.hu8hzcpq.fasta Traceback (most recent call last): File "/home/lisou/anaconda3/envs/qiime2-2022.8/lib/python3.8/site-packages/sepp/jobs.py", line 150, in run raise JobError("\n".join([ sepp.scheduler.JobError: The following execution failed: /home/lisou/anaconda3/envs/qiime2-2022.8/bin/pplacer --out-dir /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_19 -j 1 -r /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_19/pplacer.backbone.sayb4hp9.fasta -s /tmp/qiime2/lisou/data/e44b5e78-31e5-4a0f-9041-494bc3ca2df2/data/raxml-info.txt -t /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_19/pplacer.tree.opg4by6d.tre --groups 10 /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_19/pplacer.extended.0.kbjy4mbb.fasta No error messages available [18:44:10] jobs.py (line 80): DEBUG: Starting pplacer Job with input: backbone_alignment_file:/tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_20/pplacer.backbone.io65sl78.fasta, tree_file:/tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_20/pplacer.tree.96qfn0x8.tre, info_file:/tmp/qiime2/lisou/data/e44b5e78-31e5-4a0f-9041-494bc3ca2df2/data/raxml-info.txt, extended alignment:/tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_20/pplacer.extended.2.buzrgnsw.fasta, output:/tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_20/pplacer.extended.2.buzrgnsw.jplace [18:44:10] jobs.py (line 106): DEBUG: Invocation of /home/lisou/anaconda3/envs/qiime2-2022.8/bin/pplacer --out-dir /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_20 -j 1 -r /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_20/pplacer.backbone.io65sl78.fasta -s /tmp/qiime2/lisou/data/e44b5e78-31e5-4a0f-9041-494bc3ca2df2/data/raxml-info.txt -t /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_20/pplacer.tree.96qfn0x8.tre --groups 10 /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_20/pplacer.extended.2.buzrgnsw.fasta [18:44:10] alignment.py (line 615): DEBUG: Relabeling 1992 (1992) with 1992 labels. [18:44:10] exhaustive.py (line 182): DEBUG: Merging alignment subset into placement subset for chunk 0: A_102_0. [18:44:10] alignment.py (line 727): DEBUG: Merging started ... [18:44:10] alignment.py (line 834): DEBUG: Merging finished ... [18:44:10] problem.py (line 246): DEBUG: Reading /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_102/A_102_1/hmmbuild.input.z0_qk08c.fasta [] and relabeling it based on 1998 orig column labels. [18:44:10] alignment.py (line 543): DEBUG: Reading base alignment: /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_102/A_102_1/hmmbuild.input.z0_qk08c.fasta. [18:44:10] alignment.py (line 615): DEBUG: Relabeling 1998 (1998) with 1998 labels. [18:44:10] exhaustive.py (line 182): DEBUG: Merging alignment subset into placement subset for chunk 0: A_102_1. [18:44:10] alignment.py (line 727): DEBUG: Merging started ... [18:44:10] alignment.py (line 834): DEBUG: Merging finished ... [18:44:10] problem.py (line 246): DEBUG: Reading /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_102/A_102_2/hmmbuild.input.okb1v3gf.fasta [] and relabeling it based on 2109 orig column labels. [18:44:10] alignment.py (line 543): DEBUG: Reading base alignment: /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_102/A_102_2/hmmbuild.input.okb1v3gf.fasta. [18:44:10] jobs.py (line 144): DEBUG: Finished pplacer Job with input: backbone_alignment_file:/tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_20/pplacer.backbone.xtqkfk1r.fasta, tree_file:/tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_20/pplacer.tree.9kl4m1kd.tre, info_file:/tmp/qiime2/lisou/data/e44b5e78-31e5-4a0f-9041-494bc3ca2df2/data/raxml-info.txt, extended alignment:/tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_20/pplacer.extended.0.xp45k3qy.fasta, output:/tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_20/pplacer.extended.0.xp45k3qy.jplace with: return code: -11 output: error: [18:44:10] alignment.py (line 615): DEBUG: Relabeling 2109 (2109) with 2109 labels. [18:44:10] exhaustive.py (line 182): DEBUG: Merging alignment subset into placement subset for chunk 0: A_102_2. [18:44:10] alignment.py (line 727): DEBUG: Merging started ... [18:44:10] jobs.py (line 144): DEBUG: Finished pplacer Job with input: backbone_alignment_file:/tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_20/pplacer.backbone.wyvufk_9.fasta, tree_file:/tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_20/pplacer.tree.2wfouvlt.tre, info_file:/tmp/qiime2/lisou/data/e44b5e78-31e5-4a0f-9041-494bc3ca2df2/data/raxml-info.txt, extended alignment:/tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_20/pplacer.extended.1.hu8hzcpq.fasta, output:/tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_20/pplacer.extended.1.hu8hzcpq.jplace with: return code: -11 output: error: [18:44:10] alignment.py (line 834): DEBUG: Merging finished ... [18:44:10] problem.py (line 246): DEBUG: Reading /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_102/A_102_3/hmmbuild.input.pze5ngn4.fasta [] and relabeling it based on 2066 orig column labels. [18:44:10] alignment.py (line 543): DEBUG: Reading base alignment: /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_102/A_102_3/hmmbuild.input.pze5ngn4.fasta. [18:44:10] jobs.py (line 144): DEBUG: Finished pplacer Job with input: backbone_alignment_file:/tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_20/pplacer.backbone.io65sl78.fasta, tree_file:/tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_20/pplacer.tree.96qfn0x8.tre, info_file:/tmp/qiime2/lisou/data/e44b5e78-31e5-4a0f-9041-494bc3ca2df2/data/raxml-info.txt, extended alignment:/tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_20/pplacer.extended.2.buzrgnsw.fasta, output:/tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_20/pplacer.extended.2.buzrgnsw.jplace with: return code: -11 output: error: [18:44:10] alignment.py (line 615): DEBUG: Relabeling 2066 (2066) with 2066 labels. [18:44:10] exhaustive.py (line 182): DEBUG: Merging alignment subset into placement subset for chunk 0: A_102_3. [18:44:10] alignment.py (line 727): DEBUG: Merging started ... [18:44:10] alignment.py (line 834): DEBUG: Merging finished ... [18:44:10] problem.py (line 246): DEBUG: Reading /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_102/A_102_4/hmmbuild.input.eq6lgas0.fasta [] and relabeling it based on 2072 orig column labels. [18:44:10] alignment.py (line 543): DEBUG: Reading base alignment: /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_102/A_102_4/hmmbuild.input.eq6lgas0.fasta. [18:44:10] alignment.py (line 615): DEBUG: Relabeling 2072 (2072) with 2072 labels. [18:44:10] exhaustive.py (line 182): DEBUG: Merging alignment subset into placement subset for chunk 0: A_102_4. [18:44:10] alignment.py (line 727): DEBUG: Merging started ... [18:44:10] alignment.py (line 834): DEBUG: Merging finished ... [18:44:10] problem.py (line 246): DEBUG: Reading /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_102/A_102_5/hmmbuild.input.gmblzj5w.fasta [] and relabeling it based on 2203 orig column labels. [18:44:10] alignment.py (line 543): DEBUG: Reading base alignment: /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_102/A_102_5/hmmbuild.input.gmblzj5w.fasta. [18:44:10] alignment.py (line 615): DEBUG: Relabeling 2203 (2203) with 2203 labels. [18:44:10] exhaustive.py (line 182): DEBUG: Merging alignment subset into placement subset for chunk 0: A_102_5. [18:44:10] alignment.py (line 727): DEBUG: Merging started ... [18:44:10] alignment.py (line 834): DEBUG: Merging finished ... [18:44:10] problem.py (line 246): DEBUG: Reading /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_102/A_102_6/hmmbuild.input.rcm9p0wj.fasta [] and relabeling it based on 2057 orig column labels. [18:44:10] alignment.py (line 543): DEBUG: Reading base alignment: /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_102/A_102_6/hmmbuild.input.rcm9p0wj.fasta. [18:44:10] alignment.py (line 615): DEBUG: Relabeling 2057 (2057) with 2057 labels. [18:44:10] exhaustive.py (line 182): DEBUG: Merging alignment subset into placement subset for chunk 0: A_102_6. [18:44:10] alignment.py (line 727): DEBUG: Merging started ... [18:44:10] alignment.py (line 834): DEBUG: Merging finished ... [18:44:10] problem.py (line 246): DEBUG: Reading /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_102/A_102_0/hmmbuild.input.g3fnf_u3.fasta [] and relabeling it based on 1992 orig column labels. [18:44:10] alignment.py (line 543): DEBUG: Reading base alignment: /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_102/A_102_0/hmmbuild.input.g3fnf_u3.fasta. [18:44:10] alignment.py (line 615): DEBUG: Relabeling 1992 (1992) with 1992 labels. [18:44:10] exhaustive.py (line 182): DEBUG: Merging alignment subset into placement subset for chunk 1: A_102_0. [18:44:10] alignment.py (line 727): DEBUG: Merging started ... [18:44:10] alignment.py (line 834): DEBUG: Merging finished ... [18:44:10] problem.py (line 246): DEBUG: Reading /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_102/A_102_1/hmmbuild.input.z0_qk08c.fasta [] and relabeling it based on 1998 orig column labels. [18:44:10] alignment.py (line 543): DEBUG: Reading base alignment: /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_102/A_102_1/hmmbuild.input.z0_qk08c.fasta. [18:44:10] alignment.py (line 615): DEBUG: Relabeling 1998 (1998) with 1998 labels. [18:44:10] exhaustive.py (line 182): DEBUG: Merging alignment subset into placement subset for chunk 1: A_102_1. [18:44:10] alignment.py (line 727): DEBUG: Merging started ... [18:44:10] alignment.py (line 834): DEBUG: Merging finished ... [18:44:10] problem.py (line 246): DEBUG: Reading /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_102/A_102_2/hmmbuild.input.okb1v3gf.fasta [] and relabeling it based on 2109 orig column labels. [18:44:10] alignment.py (line 543): DEBUG: Reading base alignment: /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_102/A_102_2/hmmbuild.input.okb1v3gf.fasta. [18:44:10] alignment.py (line 615): DEBUG: Relabeling 2109 (2109) with 2109 labels. [18:44:10] exhaustive.py (line 182): DEBUG: Merging alignment subset into placement subset for chunk 1: A_102_2. [18:44:10] alignment.py (line 727): DEBUG: Merging started ... [18:44:10] alignment.py (line 834): DEBUG: Merging finished ... [18:44:10] problem.py (line 246): DEBUG: Reading /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_102/A_102_3/hmmbuild.input.pze5ngn4.fasta [] and relabeling it based on 2066 orig column labels. [18:44:10] alignment.py (line 543): DEBUG: Reading base alignment: /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_102/A_102_3/hmmbuild.input.pze5ngn4.fasta. [18:44:10] alignment.py (line 615): DEBUG: Relabeling 2066 (2066) with 2066 labels. [18:44:10] exhaustive.py (line 182): DEBUG: Merging alignment subset into placement subset for chunk 1: A_102_3. [18:44:10] alignment.py (line 727): DEBUG: Merging started ... [18:44:10] alignment.py (line 834): DEBUG: Merging finished ... [18:44:10] problem.py (line 246): DEBUG: Reading /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_102/A_102_4/hmmbuild.input.eq6lgas0.fasta [] and relabeling it based on 2072 orig column labels. [18:44:10] alignment.py (line 543): DEBUG: Reading base alignment: /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_102/A_102_4/hmmbuild.input.eq6lgas0.fasta. [18:44:10] alignment.py (line 615): DEBUG: Relabeling 2072 (2072) with 2072 labels. [18:44:10] exhaustive.py (line 182): DEBUG: Merging alignment subset into placement subset for chunk 1: A_102_4. [18:44:10] alignment.py (line 727): DEBUG: Merging started ... [18:44:10] alignment.py (line 834): DEBUG: Merging finished ... [18:44:10] problem.py (line 246): DEBUG: Reading /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_102/A_102_5/hmmbuild.input.gmblzj5w.fasta [] and relabeling it based on 2203 orig column labels. [18:44:10] alignment.py (line 543): DEBUG: Reading base alignment: /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_102/A_102_5/hmmbuild.input.gmblzj5w.fasta. [18:44:10] alignment.py (line 615): DEBUG: Relabeling 2203 (2203) with 2203 labels. [18:44:10] exhaustive.py (line 182): DEBUG: Merging alignment subset into placement subset for chunk 1: A_102_5. [18:44:10] alignment.py (line 727): DEBUG: Merging started ... [18:44:10] alignment.py (line 834): DEBUG: Merging finished ... [18:44:10] problem.py (line 246): DEBUG: Reading /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_102/A_102_6/hmmbuild.input.rcm9p0wj.fasta [] and relabeling it based on 2057 orig column labels. [18:44:10] alignment.py (line 543): DEBUG: Reading base alignment: /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_102/A_102_6/hmmbuild.input.rcm9p0wj.fasta. [18:44:10] alignment.py (line 615): DEBUG: Relabeling 2057 (2057) with 2057 labels. [18:44:10] exhaustive.py (line 182): DEBUG: Merging alignment subset into placement subset for chunk 1: A_102_6. [18:44:10] alignment.py (line 727): DEBUG: Merging started ... [18:44:10] alignment.py (line 834): DEBUG: Merging finished ... [18:44:10] problem.py (line 246): DEBUG: Reading /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_102/A_102_0/hmmbuild.input.g3fnf_u3.fasta [] and relabeling it based on 1992 orig column labels. [18:44:10] alignment.py (line 543): DEBUG: Reading base alignment: /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_102/A_102_0/hmmbuild.input.g3fnf_u3.fasta. [18:44:10] alignment.py (line 615): DEBUG: Relabeling 1992 (1992) with 1992 labels. [18:44:10] exhaustive.py (line 182): DEBUG: Merging alignment subset into placement subset for chunk 2: A_102_0. [18:44:10] alignment.py (line 727): DEBUG: Merging started ... [18:44:10] alignment.py (line 834): DEBUG: Merging finished ... [18:44:10] problem.py (line 246): DEBUG: Reading /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_102/A_102_1/hmmbuild.input.z0_qk08c.fasta [] and relabeling it based on 1998 orig column labels. [18:44:10] alignment.py (line 543): DEBUG: Reading base alignment: /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_102/A_102_1/hmmbuild.input.z0_qk08c.fasta. [18:44:10] alignment.py (line 615): DEBUG: Relabeling 1998 (1998) with 1998 labels. [18:44:10] exhaustive.py (line 182): DEBUG: Merging alignment subset into placement subset for chunk 2: A_102_1. [18:44:10] alignment.py (line 727): DEBUG: Merging started ... [18:44:10] alignment.py (line 834): DEBUG: Merging finished ... [18:44:10] problem.py (line 246): DEBUG: Reading /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_102/A_102_2/hmmbuild.input.okb1v3gf.fasta [] and relabeling it based on 2109 orig column labels. [18:44:10] alignment.py (line 543): DEBUG: Reading base alignment: /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_102/A_102_2/hmmbuild.input.okb1v3gf.fasta. [18:44:10] alignment.py (line 615): DEBUG: Relabeling 2109 (2109) with 2109 labels. [18:44:10] exhaustive.py (line 182): DEBUG: Merging alignment subset into placement subset for chunk 2: A_102_2. [18:44:10] alignment.py (line 727): DEBUG: Merging started ... [18:44:10] alignment.py (line 834): DEBUG: Merging finished ... [18:44:10] problem.py (line 246): DEBUG: Reading /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_102/A_102_3/hmmbuild.input.pze5ngn4.fasta [] and relabeling it based on 2066 orig column labels. [18:44:10] alignment.py (line 543): DEBUG: Reading base alignment: /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_102/A_102_3/hmmbuild.input.pze5ngn4.fasta. [18:44:10] alignment.py (line 615): DEBUG: Relabeling 2066 (2066) with 2066 labels. [18:44:10] exhaustive.py (line 182): DEBUG: Merging alignment subset into placement subset for chunk 2: A_102_3. [18:44:10] alignment.py (line 727): DEBUG: Merging started ... [18:44:10] alignment.py (line 834): DEBUG: Merging finished ... [18:44:10] problem.py (line 246): DEBUG: Reading /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_102/A_102_4/hmmbuild.input.eq6lgas0.fasta [] and relabeling it based on 2072 orig column labels. [18:44:10] alignment.py (line 543): DEBUG: Reading base alignment: /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_102/A_102_4/hmmbuild.input.eq6lgas0.fasta. [18:44:10] alignment.py (line 615): DEBUG: Relabeling 2072 (2072) with 2072 labels. [18:44:10] exhaustive.py (line 182): DEBUG: Merging alignment subset into placement subset for chunk 2: A_102_4. [18:44:10] alignment.py (line 727): DEBUG: Merging started ... [18:44:10] alignment.py (line 834): DEBUG: Merging finished ... [18:44:10] problem.py (line 246): DEBUG: Reading /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_102/A_102_5/hmmbuild.input.gmblzj5w.fasta [] and relabeling it based on 2203 orig column labels. [18:44:10] alignment.py (line 543): DEBUG: Reading base alignment: /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_102/A_102_5/hmmbuild.input.gmblzj5w.fasta. [18:44:10] alignment.py (line 615): DEBUG: Relabeling 2203 (2203) with 2203 labels. [18:44:10] exhaustive.py (line 182): DEBUG: Merging alignment subset into placement subset for chunk 2: A_102_5. [18:44:10] alignment.py (line 727): DEBUG: Merging started ... [18:44:10] alignment.py (line 834): DEBUG: Merging finished ... [18:44:10] problem.py (line 246): DEBUG: Reading /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_102/A_102_6/hmmbuild.input.rcm9p0wj.fasta [] and relabeling it based on 2057 orig column labels. [18:44:10] alignment.py (line 543): DEBUG: Reading base alignment: /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_102/A_102_6/hmmbuild.input.rcm9p0wj.fasta. [18:44:10] alignment.py (line 615): DEBUG: Relabeling 2057 (2057) with 2057 labels. [18:44:10] exhaustive.py (line 182): DEBUG: Merging alignment subset into placement subset for chunk 2: A_102_6. [18:44:10] alignment.py (line 727): DEBUG: Merging started ... [18:44:10] alignment.py (line 834): DEBUG: Merging finished ... [18:44:10] problem.py (line 246): DEBUG: Reading /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_102/A_102_0/hmmbuild.input.g3fnf_u3.fasta [] and relabeling it based on 1992 orig column labels. [18:44:10] alignment.py (line 543): DEBUG: Reading base alignment: /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_102/A_102_0/hmmbuild.input.g3fnf_u3.fasta. [18:44:10] alignment.py (line 615): DEBUG: Relabeling 1992 (1992) with 1992 labels. [18:44:10] exhaustive.py (line 182): DEBUG: Merging alignment subset into placement subset for chunk 3: A_102_0. [18:44:10] alignment.py (line 727): DEBUG: Merging started ... [18:44:10] alignment.py (line 834): DEBUG: Merging finished ... [18:44:10] problem.py (line 246): DEBUG: Reading /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_102/A_102_1/hmmbuild.input.z0_qk08c.fasta [] and relabeling it based on 1998 orig column labels. [18:44:10] alignment.py (line 543): DEBUG: Reading base alignment: /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_102/A_102_1/hmmbuild.input.z0_qk08c.fasta. [18:44:10] alignment.py (line 615): DEBUG: Relabeling 1998 (1998) with 1998 labels. [18:44:10] exhaustive.py (line 182): DEBUG: Merging alignment subset into placement subset for chunk 3: A_102_1. [18:44:10] alignment.py (line 727): DEBUG: Merging started ... [18:44:10] alignment.py (line 834): DEBUG: Merging finished ... [18:44:10] problem.py (line 246): DEBUG: Reading /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_102/A_102_2/hmmbuild.input.okb1v3gf.fasta [] and relabeling it based on 2109 orig column labels. [18:44:10] alignment.py (line 543): DEBUG: Reading base alignment: /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_102/A_102_2/hmmbuild.input.okb1v3gf.fasta. [18:44:10] alignment.py (line 615): DEBUG: Relabeling 2109 (2109) with 2109 labels. [18:44:10] exhaustive.py (line 182): DEBUG: Merging alignment subset into placement subset for chunk 3: A_102_2. [18:44:10] alignment.py (line 727): DEBUG: Merging started ... [18:44:10] alignment.py (line 834): DEBUG: Merging finished ... [18:44:10] problem.py (line 246): DEBUG: Reading /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_102/A_102_3/hmmbuild.input.pze5ngn4.fasta [] and relabeling it based on 2066 orig column labels. [18:44:10] alignment.py (line 543): DEBUG: Reading base alignment: /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_102/A_102_3/hmmbuild.input.pze5ngn4.fasta. [18:44:10] alignment.py (line 615): DEBUG: Relabeling 2066 (2066) with 2066 labels. [18:44:10] exhaustive.py (line 182): DEBUG: Merging alignment subset into placement subset for chunk 3: A_102_3. [18:44:10] alignment.py (line 727): DEBUG: Merging started ... [18:44:10] alignment.py (line 834): DEBUG: Merging finished ... [18:44:10] problem.py (line 246): DEBUG: Reading /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_102/A_102_4/hmmbuild.input.eq6lgas0.fasta [] and relabeling it based on 2072 orig column labels. [18:44:10] alignment.py (line 543): DEBUG: Reading base alignment: /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_102/A_102_4/hmmbuild.input.eq6lgas0.fasta. [18:44:10] alignment.py (line 615): DEBUG: Relabeling 2072 (2072) with 2072 labels. [18:44:10] exhaustive.py (line 182): DEBUG: Merging alignment subset into placement subset for chunk 3: A_102_4. [18:44:10] alignment.py (line 727): DEBUG: Merging started ... [18:44:10] alignment.py (line 834): DEBUG: Merging finished ... [18:44:10] problem.py (line 246): DEBUG: Reading /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_102/A_102_5/hmmbuild.input.gmblzj5w.fasta [] and relabeling it based on 2203 orig column labels. [18:44:10] alignment.py (line 543): DEBUG: Reading base alignment: /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_102/A_102_5/hmmbuild.input.gmblzj5w.fasta. [18:44:10] alignment.py (line 615): DEBUG: Relabeling 2203 (2203) with 2203 labels. [18:44:10] exhaustive.py (line 182): DEBUG: Merging alignment subset into placement subset for chunk 3: A_102_5. [18:44:10] alignment.py (line 727): DEBUG: Merging started ... [18:44:10] alignment.py (line 834): DEBUG: Merging finished ... [18:44:10] problem.py (line 246): DEBUG: Reading /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_102/A_102_6/hmmbuild.input.rcm9p0wj.fasta [] and relabeling it based on 2057 orig column labels. [18:44:10] alignment.py (line 543): DEBUG: Reading base alignment: /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_102/A_102_6/hmmbuild.input.rcm9p0wj.fasta. [18:44:10] alignment.py (line 615): DEBUG: Relabeling 2057 (2057) with 2057 labels. [18:44:10] exhaustive.py (line 182): DEBUG: Merging alignment subset into placement subset for chunk 3: A_102_6. [18:44:10] alignment.py (line 727): DEBUG: Merging started ... [18:44:10] alignment.py (line 834): DEBUG: Merging finished ... [18:44:10] problem.py (line 246): DEBUG: Reading /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_102/A_102_0/hmmbuild.input.g3fnf_u3.fasta [] and relabeling it based on 1992 orig column labels. [18:44:10] alignment.py (line 543): DEBUG: Reading base alignment: /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_102/A_102_0/hmmbuild.input.g3fnf_u3.fasta. [18:44:10] alignment.py (line 615): DEBUG: Relabeling 1992 (1992) with 1992 labels. [18:44:10] exhaustive.py (line 182): DEBUG: Merging alignment subset into placement subset for chunk 4: A_102_0. [18:44:10] alignment.py (line 727): DEBUG: Merging started ... [18:44:10] alignment.py (line 834): DEBUG: Merging finished ... [18:44:10] problem.py (line 246): DEBUG: Reading /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_102/A_102_1/hmmbuild.input.z0_qk08c.fasta [] and relabeling it based on 1998 orig column labels. [18:44:10] alignment.py (line 543): DEBUG: Reading base alignment: /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_102/A_102_1/hmmbuild.input.z0_qk08c.fasta. [18:44:10] alignment.py (line 615): DEBUG: Relabeling 1998 (1998) with 1998 labels. [18:44:10] exhaustive.py (line 182): DEBUG: Merging alignment subset into placement subset for chunk 4: A_102_1. [18:44:10] alignment.py (line 727): DEBUG: Merging started ... [18:44:10] alignment.py (line 834): DEBUG: Merging finished ... [18:44:10] problem.py (line 246): DEBUG: Reading /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_102/A_102_2/hmmbuild.input.okb1v3gf.fasta [] and relabeling it based on 2109 orig column labels. [18:44:10] alignment.py (line 543): DEBUG: Reading base alignment: /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_102/A_102_2/hmmbuild.input.okb1v3gf.fasta. [18:44:10] alignment.py (line 615): DEBUG: Relabeling 2109 (2109) with 2109 labels. [18:44:10] exhaustive.py (line 182): DEBUG: Merging alignment subset into placement subset for chunk 4: A_102_2. [18:44:10] alignment.py (line 727): DEBUG: Merging started ... [18:44:10] alignment.py (line 834): DEBUG: Merging finished ... [18:44:10] problem.py (line 246): DEBUG: Reading /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_102/A_102_3/hmmbuild.input.pze5ngn4.fasta [] and relabeling it based on 2066 orig column labels. [18:44:10] alignment.py (line 543): DEBUG: Reading base alignment: /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_102/A_102_3/hmmbuild.input.pze5ngn4.fasta. [18:44:10] alignment.py (line 615): DEBUG: Relabeling 2066 (2066) with 2066 labels. [18:44:10] exhaustive.py (line 182): DEBUG: Merging alignment subset into placement subset for chunk 4: A_102_3. [18:44:10] alignment.py (line 727): DEBUG: Merging started ... [18:44:10] alignment.py (line 834): DEBUG: Merging finished ... [18:44:10] problem.py (line 246): DEBUG: Reading /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_102/A_102_4/hmmbuild.input.eq6lgas0.fasta [] and relabeling it based on 2072 orig column labels. [18:44:10] alignment.py (line 543): DEBUG: Reading base alignment: /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_102/A_102_4/hmmbuild.input.eq6lgas0.fasta. [18:44:10] alignment.py (line 615): DEBUG: Relabeling 2072 (2072) with 2072 labels. [18:44:10] exhaustive.py (line 182): DEBUG: Merging alignment subset into placement subset for chunk 4: A_102_4. [18:44:10] alignment.py (line 727): DEBUG: Merging started ... [18:44:10] alignment.py (line 834): DEBUG: Merging finished ... [18:44:10] problem.py (line 246): DEBUG: Reading /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_102/A_102_5/hmmbuild.input.gmblzj5w.fasta [] and relabeling it based on 2203 orig column labels. [18:44:10] alignment.py (line 543): DEBUG: Reading base alignment: /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_102/A_102_5/hmmbuild.input.gmblzj5w.fasta. [18:44:10] alignment.py (line 615): DEBUG: Relabeling 2203 (2203) with 2203 labels. [18:44:10] exhaustive.py (line 182): DEBUG: Merging alignment subset into placement subset for chunk 4: A_102_5. [18:44:10] alignment.py (line 727): DEBUG: Merging started ... [18:44:10] alignment.py (line 834): DEBUG: Merging finished ... [18:44:10] problem.py (line 246): DEBUG: Reading /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_102/A_102_6/hmmbuild.input.rcm9p0wj.fasta [] and relabeling it based on 2057 orig column labels. [18:44:10] alignment.py (line 543): DEBUG: Reading base alignment: /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_102/A_102_6/hmmbuild.input.rcm9p0wj.fasta. [18:44:10] alignment.py (line 615): DEBUG: Relabeling 2057 (2057) with 2057 labels. [18:44:10] exhaustive.py (line 182): DEBUG: Merging alignment subset into placement subset for chunk 4: A_102_6. [18:44:10] alignment.py (line 727): DEBUG: Merging started ... [18:44:10] alignment.py (line 834): DEBUG: Merging finished ... [18:44:10] problem.py (line 246): DEBUG: Reading /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_102/A_102_0/hmmbuild.input.g3fnf_u3.fasta [] and relabeling it based on 1992 orig column labels. [18:44:10] alignment.py (line 543): DEBUG: Reading base alignment: /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_102/A_102_0/hmmbuild.input.g3fnf_u3.fasta. [18:44:10] alignment.py (line 615): DEBUG: Relabeling 1992 (1992) with 1992 labels. [18:44:10] exhaustive.py (line 182): DEBUG: Merging alignment subset into placement subset for chunk 5: A_102_0. [18:44:10] alignment.py (line 727): DEBUG: Merging started ... [18:44:10] alignment.py (line 834): DEBUG: Merging finished ... [18:44:10] problem.py (line 246): DEBUG: Reading /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_102/A_102_1/hmmbuild.input.z0_qk08c.fasta [] and relabeling it based on 1998 orig column labels. [18:44:10] alignment.py (line 543): DEBUG: Reading base alignment: /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_102/A_102_1/hmmbuild.input.z0_qk08c.fasta. [18:44:10] alignment.py (line 615): DEBUG: Relabeling 1998 (1998) with 1998 labels. [18:44:10] exhaustive.py (line 182): DEBUG: Merging alignment subset into placement subset for chunk 5: A_102_1. [18:44:10] alignment.py (line 727): DEBUG: Merging started ... [18:44:10] alignment.py (line 834): DEBUG: Merging finished ... [18:44:10] problem.py (line 246): DEBUG: Reading /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_102/A_102_2/hmmbuild.input.okb1v3gf.fasta [] and relabeling it based on 2109 orig column labels. [18:44:10] alignment.py (line 543): DEBUG: Reading base alignment: /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_102/A_102_2/hmmbuild.input.okb1v3gf.fasta. [18:44:10] alignment.py (line 615): DEBUG: Relabeling 2109 (2109) with 2109 labels. [18:44:10] exhaustive.py (line 182): DEBUG: Merging alignment subset into placement subset for chunk 5: A_102_2. [18:44:10] alignment.py (line 727): DEBUG: Merging started ... [18:44:10] alignment.py (line 834): DEBUG: Merging finished ... [18:44:10] problem.py (line 246): DEBUG: Reading /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_102/A_102_3/hmmbuild.input.pze5ngn4.fasta [] and relabeling it based on 2066 orig column labels. [18:44:10] alignment.py (line 543): DEBUG: Reading base alignment: /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_102/A_102_3/hmmbuild.input.pze5ngn4.fasta. [18:44:11] alignment.py (line 615): DEBUG: Relabeling 2066 (2066) with 2066 labels. [18:44:11] exhaustive.py (line 182): DEBUG: Merging alignment subset into placement subset for chunk 5: A_102_3. [18:44:11] alignment.py (line 727): DEBUG: Merging started ... [18:44:11] alignment.py (line 834): DEBUG: Merging finished ... [18:44:11] problem.py (line 246): DEBUG: Reading /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_102/A_102_4/hmmbuild.input.eq6lgas0.fasta [] and relabeling it based on 2072 orig column labels. [18:44:11] alignment.py (line 543): DEBUG: Reading base alignment: /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_102/A_102_4/hmmbuild.input.eq6lgas0.fasta. [18:44:11] alignment.py (line 615): DEBUG: Relabeling 2072 (2072) with 2072 labels. [18:44:11] exhaustive.py (line 182): DEBUG: Merging alignment subset into placement subset for chunk 5: A_102_4. [18:44:11] alignment.py (line 727): DEBUG: Merging started ... [18:44:11] alignment.py (line 834): DEBUG: Merging finished ... [18:44:11] problem.py (line 246): DEBUG: Reading /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_102/A_102_5/hmmbuild.input.gmblzj5w.fasta [] and relabeling it based on 2203 orig column labels. [18:44:11] alignment.py (line 543): DEBUG: Reading base alignment: /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_102/A_102_5/hmmbuild.input.gmblzj5w.fasta. [18:44:11] alignment.py (line 615): DEBUG: Relabeling 2203 (2203) with 2203 labels. [18:44:11] exhaustive.py (line 182): DEBUG: Merging alignment subset into placement subset for chunk 5: A_102_5. [18:44:11] alignment.py (line 727): DEBUG: Merging started ... [18:44:11] alignment.py (line 834): DEBUG: Merging finished ... [18:44:11] problem.py (line 246): DEBUG: Reading /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_102/A_102_6/hmmbuild.input.rcm9p0wj.fasta [] and relabeling it based on 2057 orig column labels. [18:44:11] alignment.py (line 543): DEBUG: Reading base alignment: /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_102/A_102_6/hmmbuild.input.rcm9p0wj.fasta. [18:44:11] alignment.py (line 615): DEBUG: Relabeling 2057 (2057) with 2057 labels. [18:44:11] exhaustive.py (line 182): DEBUG: Merging alignment subset into placement subset for chunk 5: A_102_6. [18:44:11] alignment.py (line 727): DEBUG: Merging started ... [18:44:11] alignment.py (line 834): DEBUG: Merging finished ... [18:44:11] problem.py (line 246): DEBUG: Reading /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_102/A_102_0/hmmbuild.input.g3fnf_u3.fasta [] and relabeling it based on 1992 orig column labels. [18:44:11] alignment.py (line 543): DEBUG: Reading base alignment: /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_102/A_102_0/hmmbuild.input.g3fnf_u3.fasta. [18:44:11] alignment.py (line 615): DEBUG: Relabeling 1992 (1992) with 1992 labels. [18:44:11] exhaustive.py (line 182): DEBUG: Merging alignment subset into placement subset for chunk 6: A_102_0. [18:44:11] alignment.py (line 727): DEBUG: Merging started ... [18:44:11] alignment.py (line 834): DEBUG: Merging finished ... [18:44:11] problem.py (line 246): DEBUG: Reading /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_102/A_102_1/hmmbuild.input.z0_qk08c.fasta [] and relabeling it based on 1998 orig column labels. [18:44:11] alignment.py (line 543): DEBUG: Reading base alignment: /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_102/A_102_1/hmmbuild.input.z0_qk08c.fasta. [18:44:11] alignment.py (line 615): DEBUG: Relabeling 1998 (1998) with 1998 labels. [18:44:11] exhaustive.py (line 182): DEBUG: Merging alignment subset into placement subset for chunk 6: A_102_1. [18:44:11] alignment.py (line 727): DEBUG: Merging started ... [18:44:11] alignment.py (line 834): DEBUG: Merging finished ... [18:44:11] problem.py (line 246): DEBUG: Reading /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_102/A_102_2/hmmbuild.input.okb1v3gf.fasta [] and relabeling it based on 2109 orig column labels. [18:44:11] alignment.py (line 543): DEBUG: Reading base alignment: /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_102/A_102_2/hmmbuild.input.okb1v3gf.fasta. [18:44:11] alignment.py (line 615): DEBUG: Relabeling 2109 (2109) with 2109 labels. [18:44:11] exhaustive.py (line 182): DEBUG: Merging alignment subset into placement subset for chunk 6: A_102_2. [18:44:11] alignment.py (line 727): DEBUG: Merging started ... [18:44:11] alignment.py (line 834): DEBUG: Merging finished ... [18:44:11] problem.py (line 246): DEBUG: Reading /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_102/A_102_3/hmmbuild.input.pze5ngn4.fasta [] and relabeling it based on 2066 orig column labels. [18:44:11] alignment.py (line 543): DEBUG: Reading base alignment: /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_102/A_102_3/hmmbuild.input.pze5ngn4.fasta. [18:44:11] alignment.py (line 615): DEBUG: Relabeling 2066 (2066) with 2066 labels. [18:44:11] exhaustive.py (line 182): DEBUG: Merging alignment subset into placement subset for chunk 6: A_102_3. [18:44:11] alignment.py (line 727): DEBUG: Merging started ... [18:44:11] alignment.py (line 834): DEBUG: Merging finished ... [18:44:11] problem.py (line 246): DEBUG: Reading /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_102/A_102_4/hmmbuild.input.eq6lgas0.fasta [] and relabeling it based on 2072 orig column labels. [18:44:11] alignment.py (line 543): DEBUG: Reading base alignment: /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_102/A_102_4/hmmbuild.input.eq6lgas0.fasta. [18:44:11] alignment.py (line 615): DEBUG: Relabeling 2072 (2072) with 2072 labels. [18:44:11] exhaustive.py (line 182): DEBUG: Merging alignment subset into placement subset for chunk 6: A_102_4. [18:44:11] alignment.py (line 727): DEBUG: Merging started ... [18:44:11] alignment.py (line 834): DEBUG: Merging finished ... [18:44:11] problem.py (line 246): DEBUG: Reading /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_102/A_102_5/hmmbuild.input.gmblzj5w.fasta [] and relabeling it based on 2203 orig column labels. [18:44:11] alignment.py (line 543): DEBUG: Reading base alignment: /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_102/A_102_5/hmmbuild.input.gmblzj5w.fasta. [18:44:11] alignment.py (line 615): DEBUG: Relabeling 2203 (2203) with 2203 labels. [18:44:11] exhaustive.py (line 182): DEBUG: Merging alignment subset into placement subset for chunk 6: A_102_5. [18:44:11] alignment.py (line 727): DEBUG: Merging started ... [18:44:11] alignment.py (line 834): DEBUG: Merging finished ... [18:44:11] problem.py (line 246): DEBUG: Reading /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_102/A_102_6/hmmbuild.input.rcm9p0wj.fasta [] and relabeling it based on 2057 orig column labels. [18:44:11] alignment.py (line 543): DEBUG: Reading base alignment: /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_102/A_102_6/hmmbuild.input.rcm9p0wj.fasta. [18:44:11] alignment.py (line 615): DEBUG: Relabeling 2057 (2057) with 2057 labels. [18:44:11] exhaustive.py (line 182): DEBUG: Merging alignment subset into placement subset for chunk 6: A_102_6. [18:44:11] alignment.py (line 727): DEBUG: Merging started ... [18:44:11] alignment.py (line 834): DEBUG: Merging finished ... [18:44:11] problem.py (line 246): DEBUG: Reading /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_102/A_102_0/hmmbuild.input.g3fnf_u3.fasta [] and relabeling it based on 1992 orig column labels. [18:44:11] alignment.py (line 543): DEBUG: Reading base alignment: /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_102/A_102_0/hmmbuild.input.g3fnf_u3.fasta. [18:44:11] alignment.py (line 615): DEBUG: Relabeling 1992 (1992) with 1992 labels. [18:44:11] exhaustive.py (line 182): DEBUG: Merging alignment subset into placement subset for chunk 7: A_102_0. [18:44:11] alignment.py (line 727): DEBUG: Merging started ... [18:44:11] alignment.py (line 834): DEBUG: Merging finished ... [18:44:11] problem.py (line 246): DEBUG: Reading /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_102/A_102_1/hmmbuild.input.z0_qk08c.fasta [] and relabeling it based on 1998 orig column labels. [18:44:11] alignment.py (line 543): DEBUG: Reading base alignment: /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_102/A_102_1/hmmbuild.input.z0_qk08c.fasta. [18:44:11] alignment.py (line 615): DEBUG: Relabeling 1998 (1998) with 1998 labels. [18:44:11] exhaustive.py (line 182): DEBUG: Merging alignment subset into placement subset for chunk 7: A_102_1. [18:44:11] alignment.py (line 727): DEBUG: Merging started ... [18:44:11] alignment.py (line 834): DEBUG: Merging finished ... [18:44:11] problem.py (line 246): DEBUG: Reading /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_102/A_102_2/hmmbuild.input.okb1v3gf.fasta [] and relabeling it based on 2109 orig column labels. [18:44:11] alignment.py (line 543): DEBUG: Reading base alignment: /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_102/A_102_2/hmmbuild.input.okb1v3gf.fasta. [18:44:11] alignment.py (line 615): DEBUG: Relabeling 2109 (2109) with 2109 labels. [18:44:11] exhaustive.py (line 182): DEBUG: Merging alignment subset into placement subset for chunk 7: A_102_2. [18:44:11] alignment.py (line 727): DEBUG: Merging started ... [18:44:11] alignment.py (line 834): DEBUG: Merging finished ... [18:44:11] problem.py (line 246): DEBUG: Reading /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_102/A_102_3/hmmbuild.input.pze5ngn4.fasta [] and relabeling it based on 2066 orig column labels. [18:44:11] alignment.py (line 543): DEBUG: Reading base alignment: /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_102/A_102_3/hmmbuild.input.pze5ngn4.fasta. [18:44:11] alignment.py (line 615): DEBUG: Relabeling 2066 (2066) with 2066 labels. [18:44:11] exhaustive.py (line 182): DEBUG: Merging alignment subset into placement subset for chunk 7: A_102_3. [18:44:11] alignment.py (line 727): DEBUG: Merging started ... [18:44:11] alignment.py (line 834): DEBUG: Merging finished ... [18:44:11] problem.py (line 246): DEBUG: Reading /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_102/A_102_4/hmmbuild.input.eq6lgas0.fasta [] and relabeling it based on 2072 orig column labels. [18:44:11] alignment.py (line 543): DEBUG: Reading base alignment: /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_102/A_102_4/hmmbuild.input.eq6lgas0.fasta. [18:44:11] alignment.py (line 615): DEBUG: Relabeling 2072 (2072) with 2072 labels. [18:44:11] exhaustive.py (line 182): DEBUG: Merging alignment subset into placement subset for chunk 7: A_102_4. [18:44:11] alignment.py (line 727): DEBUG: Merging started ... [18:44:11] alignment.py (line 834): DEBUG: Merging finished ... [18:44:11] problem.py (line 246): DEBUG: Reading /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_102/A_102_5/hmmbuild.input.gmblzj5w.fasta [] and relabeling it based on 2203 orig column labels. [18:44:11] alignment.py (line 543): DEBUG: Reading base alignment: /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_102/A_102_5/hmmbuild.input.gmblzj5w.fasta. [18:44:11] alignment.py (line 615): DEBUG: Relabeling 2203 (2203) with 2203 labels. [18:44:11] exhaustive.py (line 182): DEBUG: Merging alignment subset into placement subset for chunk 7: A_102_5. [18:44:11] alignment.py (line 727): DEBUG: Merging started ... [18:44:11] alignment.py (line 834): DEBUG: Merging finished ... [18:44:11] problem.py (line 246): DEBUG: Reading /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_102/A_102_6/hmmbuild.input.rcm9p0wj.fasta [] and relabeling it based on 2057 orig column labels. [18:44:11] alignment.py (line 543): DEBUG: Reading base alignment: /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_102/A_102_6/hmmbuild.input.rcm9p0wj.fasta. [18:44:11] alignment.py (line 615): DEBUG: Relabeling 2057 (2057) with 2057 labels. [18:44:11] exhaustive.py (line 182): DEBUG: Merging alignment subset into placement subset for chunk 7: A_102_6. [18:44:11] alignment.py (line 727): DEBUG: Merging started ... [18:44:11] alignment.py (line 834): DEBUG: Merging finished ... [18:44:11] alignment.py (line 203): DEBUG: Writing alignment of type with length 0 to file /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_102/pplacer.extended.0.knogpnjq.fasta [18:44:11] alignment.py (line 203): DEBUG: Writing alignment of type with length 4843 to file /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_102/pplacer.backbone.d0f4e6dj.fasta [18:44:11] alignment.py (line 203): DEBUG: Writing alignment of type with length 0 to file /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_102/pplacer.extended.1.040gsfg_.fasta [18:44:11] alignment.py (line 203): DEBUG: Writing alignment of type with length 4843 to file /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_102/pplacer.backbone.58oes0jl.fasta [18:44:11] alignment.py (line 203): DEBUG: Writing alignment of type with length 0 to file /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_102/pplacer.extended.2.ibyzt6wq.fasta [18:44:11] alignment.py (line 203): DEBUG: Writing alignment of type with length 4843 to file /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_102/pplacer.backbone.ynzeu4vc.fasta [18:44:11] alignment.py (line 203): DEBUG: Writing alignment of type with length 0 to file /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_102/pplacer.extended.3.v2cic3zu.fasta [18:44:11] alignment.py (line 203): DEBUG: Writing alignment of type with length 4843 to file /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_102/pplacer.backbone.re_s3_ke.fasta [18:44:11] alignment.py (line 203): DEBUG: Writing alignment of type with length 0 to file /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_102/pplacer.extended.4.67t8heig.fasta [18:44:11] alignment.py (line 203): DEBUG: Writing alignment of type with length 4843 to file /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_102/pplacer.backbone.y3co_1u4.fasta [18:44:11] alignment.py (line 203): DEBUG: Writing alignment of type with length 0 to file /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_102/pplacer.extended.5.keylbrqe.fasta [18:44:11] alignment.py (line 203): DEBUG: Writing alignment of type with length 4843 to file /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_102/pplacer.backbone.oarsulks.fasta [18:44:11] alignment.py (line 203): DEBUG: Writing alignment of type with length 0 to file /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_102/pplacer.extended.6.io_ig9sa.fasta [18:44:11] alignment.py (line 203): DEBUG: Writing alignment of type with length 4843 to file /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_102/pplacer.backbone.tucsg6i0.fasta [18:44:11] alignment.py (line 203): DEBUG: Writing alignment of type with length 0 to file /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_102/pplacer.extended.7.is3gi16r.fasta [18:44:11] alignment.py (line 203): DEBUG: Writing alignment of type with length 4843 to file /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_102/pplacer.backbone.jayfrmkk.fasta [18:44:11] exhaustive.py (line 151): INFO: Merging sub-alignments for placement problem : P_103. [18:44:11] problem.py (line 246): DEBUG: Reading /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_103/A_103_0/hmmbuild.input.uzcaw9xl.fasta [] and relabeling it based on 1652 orig column labels. [18:44:11] alignment.py (line 543): DEBUG: Reading base alignment: /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_103/A_103_0/hmmbuild.input.uzcaw9xl.fasta. [18:44:11] alignment.py (line 615): DEBUG: Relabeling 1652 (1652) with 1652 labels. [18:44:11] exhaustive.py (line 182): DEBUG: Merging alignment subset into placement subset for chunk 0: A_103_0. [18:44:11] alignment.py (line 727): DEBUG: Merging started ... [18:44:11] alignment.py (line 834): DEBUG: Merging finished ... [18:44:11] problem.py (line 246): DEBUG: Reading /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_103/A_103_1/hmmbuild.input.zzeclab0.fasta [] and relabeling it based on 1553 orig column labels. [18:44:11] alignment.py (line 543): DEBUG: Reading base alignment: /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_103/A_103_1/hmmbuild.input.zzeclab0.fasta. [18:44:11] alignment.py (line 615): DEBUG: Relabeling 1553 (1553) with 1553 labels. [18:44:11] exhaustive.py (line 182): DEBUG: Merging alignment subset into placement subset for chunk 0: A_103_1. [18:44:11] alignment.py (line 727): DEBUG: Merging started ... [18:44:11] alignment.py (line 834): DEBUG: Merging finished ... [18:44:11] problem.py (line 246): DEBUG: Reading /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_103/A_103_2/hmmbuild.input.pxbk_u1j.fasta [] and relabeling it based on 1583 orig column labels. [18:44:11] alignment.py (line 543): DEBUG: Reading base alignment: /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_103/A_103_2/hmmbuild.input.pxbk_u1j.fasta. [18:44:11] alignment.py (line 615): DEBUG: Relabeling 1583 (1583) with 1583 labels. [18:44:11] exhaustive.py (line 182): DEBUG: Merging alignment subset into placement subset for chunk 0: A_103_2. [18:44:11] alignment.py (line 727): DEBUG: Merging started ... [18:44:11] alignment.py (line 834): DEBUG: Merging finished ... [18:44:11] problem.py (line 246): DEBUG: Reading /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_103/A_103_3/hmmbuild.input.8vrv8p7u.fasta [] and relabeling it based on 1688 orig column labels. [18:44:11] alignment.py (line 543): DEBUG: Reading base alignment: /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_103/A_103_3/hmmbuild.input.8vrv8p7u.fasta. [18:44:11] alignment.py (line 615): DEBUG: Relabeling 1688 (1688) with 1688 labels. [18:44:11] exhaustive.py (line 182): DEBUG: Merging alignment subset into placement subset for chunk 0: A_103_3. [18:44:11] alignment.py (line 727): DEBUG: Merging started ... [18:44:11] alignment.py (line 834): DEBUG: Merging finished ... [18:44:11] problem.py (line 246): DEBUG: Reading /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_103/A_103_4/hmmbuild.input.rmq1vctw.fasta [] and relabeling it based on 1563 orig column labels. [18:44:11] alignment.py (line 543): DEBUG: Reading base alignment: /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_103/A_103_4/hmmbuild.input.rmq1vctw.fasta. [18:44:11] alignment.py (line 615): DEBUG: Relabeling 1563 (1563) with 1563 labels. [18:44:11] exhaustive.py (line 182): DEBUG: Merging alignment subset into placement subset for chunk 0: A_103_4. [18:44:11] alignment.py (line 727): DEBUG: Merging started ... [18:44:11] alignment.py (line 834): DEBUG: Merging finished ... [18:44:11] problem.py (line 246): DEBUG: Reading /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_103/A_103_5/hmmbuild.input.ntrgja0d.fasta [] and relabeling it based on 1704 orig column labels. [18:44:11] alignment.py (line 543): DEBUG: Reading base alignment: /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_103/A_103_5/hmmbuild.input.ntrgja0d.fasta. [18:44:11] alignment.py (line 615): DEBUG: Relabeling 1704 (1704) with 1704 labels. [18:44:11] exhaustive.py (line 182): DEBUG: Merging alignment subset into placement subset for chunk 0: A_103_5. [18:44:11] alignment.py (line 727): DEBUG: Merging started ... [18:44:11] alignment.py (line 834): DEBUG: Merging finished ... [18:44:11] problem.py (line 246): DEBUG: Reading /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_103/A_103_0/hmmbuild.input.uzcaw9xl.fasta [] and relabeling it based on 1652 orig column labels. [18:44:11] alignment.py (line 543): DEBUG: Reading base alignment: /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_103/A_103_0/hmmbuild.input.uzcaw9xl.fasta. [18:44:11] alignment.py (line 615): DEBUG: Relabeling 1652 (1652) with 1652 labels. [18:44:11] exhaustive.py (line 182): DEBUG: Merging alignment subset into placement subset for chunk 1: A_103_0. [18:44:11] alignment.py (line 727): DEBUG: Merging started ... [18:44:11] alignment.py (line 834): DEBUG: Merging finished ... [18:44:11] problem.py (line 246): DEBUG: Reading /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_103/A_103_1/hmmbuild.input.zzeclab0.fasta [] and relabeling it based on 1553 orig column labels. [18:44:11] alignment.py (line 543): DEBUG: Reading base alignment: /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_103/A_103_1/hmmbuild.input.zzeclab0.fasta. [18:44:11] alignment.py (line 615): DEBUG: Relabeling 1553 (1553) with 1553 labels. [18:44:11] exhaustive.py (line 182): DEBUG: Merging alignment subset into placement subset for chunk 1: A_103_1. [18:44:11] alignment.py (line 727): DEBUG: Merging started ... [18:44:11] alignment.py (line 834): DEBUG: Merging finished ... [18:44:11] problem.py (line 246): DEBUG: Reading /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_103/A_103_2/hmmbuild.input.pxbk_u1j.fasta [] and relabeling it based on 1583 orig column labels. [18:44:11] alignment.py (line 543): DEBUG: Reading base alignment: /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_103/A_103_2/hmmbuild.input.pxbk_u1j.fasta. [18:44:11] alignment.py (line 615): DEBUG: Relabeling 1583 (1583) with 1583 labels. [18:44:11] exhaustive.py (line 182): DEBUG: Merging alignment subset into placement subset for chunk 1: A_103_2. [18:44:11] alignment.py (line 727): DEBUG: Merging started ... [18:44:11] alignment.py (line 834): DEBUG: Merging finished ... [18:44:11] problem.py (line 246): DEBUG: Reading /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_103/A_103_3/hmmbuild.input.8vrv8p7u.fasta [] and relabeling it based on 1688 orig column labels. [18:44:11] alignment.py (line 543): DEBUG: Reading base alignment: /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_103/A_103_3/hmmbuild.input.8vrv8p7u.fasta. [18:44:11] alignment.py (line 615): DEBUG: Relabeling 1688 (1688) with 1688 labels. [18:44:11] exhaustive.py (line 182): DEBUG: Merging alignment subset into placement subset for chunk 1: A_103_3. [18:44:11] alignment.py (line 727): DEBUG: Merging started ... [18:44:11] alignment.py (line 834): DEBUG: Merging finished ... [18:44:11] problem.py (line 246): DEBUG: Reading /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_103/A_103_4/hmmbuild.input.rmq1vctw.fasta [] and relabeling it based on 1563 orig column labels. [18:44:11] alignment.py (line 543): DEBUG: Reading base alignment: /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_103/A_103_4/hmmbuild.input.rmq1vctw.fasta. [18:44:11] alignment.py (line 615): DEBUG: Relabeling 1563 (1563) with 1563 labels. [18:44:11] exhaustive.py (line 182): DEBUG: Merging alignment subset into placement subset for chunk 1: A_103_4. [18:44:11] alignment.py (line 727): DEBUG: Merging started ... [18:44:11] alignment.py (line 834): DEBUG: Merging finished ... [18:44:11] problem.py (line 246): DEBUG: Reading /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_103/A_103_5/hmmbuild.input.ntrgja0d.fasta [] and relabeling it based on 1704 orig column labels. [18:44:11] alignment.py (line 543): DEBUG: Reading base alignment: /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_103/A_103_5/hmmbuild.input.ntrgja0d.fasta. [18:44:11] alignment.py (line 615): DEBUG: Relabeling 1704 (1704) with 1704 labels. [18:44:11] exhaustive.py (line 182): DEBUG: Merging alignment subset into placement subset for chunk 1: A_103_5. [18:44:11] alignment.py (line 727): DEBUG: Merging started ... [18:44:11] alignment.py (line 834): DEBUG: Merging finished ... [18:44:11] problem.py (line 246): DEBUG: Reading /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_103/A_103_0/hmmbuild.input.uzcaw9xl.fasta [] and relabeling it based on 1652 orig column labels. [18:44:11] alignment.py (line 543): DEBUG: Reading base alignment: /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_103/A_103_0/hmmbuild.input.uzcaw9xl.fasta. [18:44:11] alignment.py (line 615): DEBUG: Relabeling 1652 (1652) with 1652 labels. [18:44:11] exhaustive.py (line 182): DEBUG: Merging alignment subset into placement subset for chunk 2: A_103_0. [18:44:11] alignment.py (line 727): DEBUG: Merging started ... [18:44:11] alignment.py (line 834): DEBUG: Merging finished ... [18:44:11] problem.py (line 246): DEBUG: Reading /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_103/A_103_1/hmmbuild.input.zzeclab0.fasta [] and relabeling it based on 1553 orig column labels. [18:44:11] alignment.py (line 543): DEBUG: Reading base alignment: /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_103/A_103_1/hmmbuild.input.zzeclab0.fasta. [18:44:11] alignment.py (line 615): DEBUG: Relabeling 1553 (1553) with 1553 labels. [18:44:11] exhaustive.py (line 182): DEBUG: Merging alignment subset into placement subset for chunk 2: A_103_1. [18:44:11] alignment.py (line 727): DEBUG: Merging started ... [18:44:11] alignment.py (line 834): DEBUG: Merging finished ... [18:44:11] problem.py (line 246): DEBUG: Reading /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_103/A_103_2/hmmbuild.input.pxbk_u1j.fasta [] and relabeling it based on 1583 orig column labels. [18:44:11] alignment.py (line 543): DEBUG: Reading base alignment: /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_103/A_103_2/hmmbuild.input.pxbk_u1j.fasta. [18:44:11] alignment.py (line 615): DEBUG: Relabeling 1583 (1583) with 1583 labels. [18:44:11] exhaustive.py (line 182): DEBUG: Merging alignment subset into placement subset for chunk 2: A_103_2. [18:44:11] alignment.py (line 727): DEBUG: Merging started ... [18:44:11] alignment.py (line 834): DEBUG: Merging finished ... [18:44:11] problem.py (line 246): DEBUG: Reading /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_103/A_103_3/hmmbuild.input.8vrv8p7u.fasta [] and relabeling it based on 1688 orig column labels. [18:44:11] alignment.py (line 543): DEBUG: Reading base alignment: /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_103/A_103_3/hmmbuild.input.8vrv8p7u.fasta. [18:44:11] alignment.py (line 615): DEBUG: Relabeling 1688 (1688) with 1688 labels. [18:44:11] exhaustive.py (line 182): DEBUG: Merging alignment subset into placement subset for chunk 2: A_103_3. [18:44:11] alignment.py (line 727): DEBUG: Merging started ... [18:44:11] alignment.py (line 834): DEBUG: Merging finished ... [18:44:11] problem.py (line 246): DEBUG: Reading /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_103/A_103_4/hmmbuild.input.rmq1vctw.fasta [] and relabeling it based on 1563 orig column labels. [18:44:11] alignment.py (line 543): DEBUG: Reading base alignment: /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_103/A_103_4/hmmbuild.input.rmq1vctw.fasta. [18:44:11] alignment.py (line 615): DEBUG: Relabeling 1563 (1563) with 1563 labels. [18:44:11] exhaustive.py (line 182): DEBUG: Merging alignment subset into placement subset for chunk 2: A_103_4. [18:44:11] alignment.py (line 727): DEBUG: Merging started ... [18:44:11] alignment.py (line 834): DEBUG: Merging finished ... [18:44:11] problem.py (line 246): DEBUG: Reading /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_103/A_103_5/hmmbuild.input.ntrgja0d.fasta [] and relabeling it based on 1704 orig column labels. [18:44:11] alignment.py (line 543): DEBUG: Reading base alignment: /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_103/A_103_5/hmmbuild.input.ntrgja0d.fasta. [18:44:11] alignment.py (line 615): DEBUG: Relabeling 1704 (1704) with 1704 labels. [18:44:11] exhaustive.py (line 182): DEBUG: Merging alignment subset into placement subset for chunk 2: A_103_5. [18:44:11] alignment.py (line 727): DEBUG: Merging started ... [18:44:11] alignment.py (line 834): DEBUG: Merging finished ... [18:44:11] problem.py (line 246): DEBUG: Reading /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_103/A_103_0/hmmbuild.input.uzcaw9xl.fasta [] and relabeling it based on 1652 orig column labels. [18:44:11] alignment.py (line 543): DEBUG: Reading base alignment: /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_103/A_103_0/hmmbuild.input.uzcaw9xl.fasta. [18:44:11] alignment.py (line 615): DEBUG: Relabeling 1652 (1652) with 1652 labels. [18:44:11] exhaustive.py (line 182): DEBUG: Merging alignment subset into placement subset for chunk 3: A_103_0. [18:44:11] alignment.py (line 727): DEBUG: Merging started ... [18:44:11] alignment.py (line 834): DEBUG: Merging finished ... [18:44:11] problem.py (line 246): DEBUG: Reading /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_103/A_103_1/hmmbuild.input.zzeclab0.fasta [] and relabeling it based on 1553 orig column labels. [18:44:11] alignment.py (line 543): DEBUG: Reading base alignment: /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_103/A_103_1/hmmbuild.input.zzeclab0.fasta. [18:44:11] alignment.py (line 615): DEBUG: Relabeling 1553 (1553) with 1553 labels. [18:44:11] exhaustive.py (line 182): DEBUG: Merging alignment subset into placement subset for chunk 3: A_103_1. [18:44:11] alignment.py (line 727): DEBUG: Merging started ... [18:44:11] alignment.py (line 834): DEBUG: Merging finished ... [18:44:11] problem.py (line 246): DEBUG: Reading /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_103/A_103_2/hmmbuild.input.pxbk_u1j.fasta [] and relabeling it based on 1583 orig column labels. [18:44:11] alignment.py (line 543): DEBUG: Reading base alignment: /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_103/A_103_2/hmmbuild.input.pxbk_u1j.fasta. [18:44:11] alignment.py (line 615): DEBUG: Relabeling 1583 (1583) with 1583 labels. [18:44:11] exhaustive.py (line 182): DEBUG: Merging alignment subset into placement subset for chunk 3: A_103_2. [18:44:11] alignment.py (line 727): DEBUG: Merging started ... [18:44:11] alignment.py (line 834): DEBUG: Merging finished ... [18:44:11] problem.py (line 246): DEBUG: Reading /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_103/A_103_3/hmmbuild.input.8vrv8p7u.fasta [] and relabeling it based on 1688 orig column labels. [18:44:11] alignment.py (line 543): DEBUG: Reading base alignment: /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_103/A_103_3/hmmbuild.input.8vrv8p7u.fasta. [18:44:11] alignment.py (line 615): DEBUG: Relabeling 1688 (1688) with 1688 labels. [18:44:11] exhaustive.py (line 182): DEBUG: Merging alignment subset into placement subset for chunk 3: A_103_3. [18:44:11] alignment.py (line 727): DEBUG: Merging started ... [18:44:11] alignment.py (line 834): DEBUG: Merging finished ... [18:44:11] problem.py (line 246): DEBUG: Reading /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_103/A_103_4/hmmbuild.input.rmq1vctw.fasta [] and relabeling it based on 1563 orig column labels. [18:44:11] alignment.py (line 543): DEBUG: Reading base alignment: /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_103/A_103_4/hmmbuild.input.rmq1vctw.fasta. [18:44:11] alignment.py (line 615): DEBUG: Relabeling 1563 (1563) with 1563 labels. [18:44:11] exhaustive.py (line 182): DEBUG: Merging alignment subset into placement subset for chunk 3: A_103_4. [18:44:11] alignment.py (line 727): DEBUG: Merging started ... [18:44:11] alignment.py (line 834): DEBUG: Merging finished ... [18:44:11] problem.py (line 246): DEBUG: Reading /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_103/A_103_5/hmmbuild.input.ntrgja0d.fasta [] and relabeling it based on 1704 orig column labels. [18:44:11] alignment.py (line 543): DEBUG: Reading base alignment: /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_103/A_103_5/hmmbuild.input.ntrgja0d.fasta. [18:44:11] alignment.py (line 615): DEBUG: Relabeling 1704 (1704) with 1704 labels. [18:44:11] exhaustive.py (line 182): DEBUG: Merging alignment subset into placement subset for chunk 3: A_103_5. [18:44:11] alignment.py (line 727): DEBUG: Merging started ... [18:44:11] alignment.py (line 834): DEBUG: Merging finished ... [18:44:11] problem.py (line 246): DEBUG: Reading /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_103/A_103_0/hmmbuild.input.uzcaw9xl.fasta [] and relabeling it based on 1652 orig column labels. [18:44:11] alignment.py (line 543): DEBUG: Reading base alignment: /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_103/A_103_0/hmmbuild.input.uzcaw9xl.fasta. [18:44:11] alignment.py (line 615): DEBUG: Relabeling 1652 (1652) with 1652 labels. [18:44:11] exhaustive.py (line 182): DEBUG: Merging alignment subset into placement subset for chunk 4: A_103_0. [18:44:11] alignment.py (line 727): DEBUG: Merging started ... [18:44:11] alignment.py (line 834): DEBUG: Merging finished ... [18:44:11] problem.py (line 246): DEBUG: Reading /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_103/A_103_1/hmmbuild.input.zzeclab0.fasta [] and relabeling it based on 1553 orig column labels. [18:44:11] alignment.py (line 543): DEBUG: Reading base alignment: /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_103/A_103_1/hmmbuild.input.zzeclab0.fasta. [18:44:11] alignment.py (line 615): DEBUG: Relabeling 1553 (1553) with 1553 labels. [18:44:11] exhaustive.py (line 182): DEBUG: Merging alignment subset into placement subset for chunk 4: A_103_1. [18:44:11] alignment.py (line 727): DEBUG: Merging started ... [18:44:11] alignment.py (line 834): DEBUG: Merging finished ... [18:44:11] problem.py (line 246): DEBUG: Reading /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_103/A_103_2/hmmbuild.input.pxbk_u1j.fasta [] and relabeling it based on 1583 orig column labels. [18:44:11] alignment.py (line 543): DEBUG: Reading base alignment: /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_103/A_103_2/hmmbuild.input.pxbk_u1j.fasta. [18:44:11] alignment.py (line 615): DEBUG: Relabeling 1583 (1583) with 1583 labels. [18:44:11] exhaustive.py (line 182): DEBUG: Merging alignment subset into placement subset for chunk 4: A_103_2. [18:44:11] alignment.py (line 727): DEBUG: Merging started ... [18:44:11] alignment.py (line 834): DEBUG: Merging finished ... [18:44:11] problem.py (line 246): DEBUG: Reading /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_103/A_103_3/hmmbuild.input.8vrv8p7u.fasta [] and relabeling it based on 1688 orig column labels. [18:44:11] alignment.py (line 543): DEBUG: Reading base alignment: /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_103/A_103_3/hmmbuild.input.8vrv8p7u.fasta. [18:44:11] alignment.py (line 615): DEBUG: Relabeling 1688 (1688) with 1688 labels. [18:44:11] exhaustive.py (line 182): DEBUG: Merging alignment subset into placement subset for chunk 4: A_103_3. [18:44:11] alignment.py (line 727): DEBUG: Merging started ... [18:44:11] alignment.py (line 834): DEBUG: Merging finished ... [18:44:11] problem.py (line 246): DEBUG: Reading /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_103/A_103_4/hmmbuild.input.rmq1vctw.fasta [] and relabeling it based on 1563 orig column labels. [18:44:11] alignment.py (line 543): DEBUG: Reading base alignment: /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_103/A_103_4/hmmbuild.input.rmq1vctw.fasta. [18:44:11] alignment.py (line 615): DEBUG: Relabeling 1563 (1563) with 1563 labels. [18:44:11] exhaustive.py (line 182): DEBUG: Merging alignment subset into placement subset for chunk 4: A_103_4. [18:44:11] alignment.py (line 727): DEBUG: Merging started ... [18:44:11] alignment.py (line 834): DEBUG: Merging finished ... [18:44:11] problem.py (line 246): DEBUG: Reading /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_103/A_103_5/hmmbuild.input.ntrgja0d.fasta [] and relabeling it based on 1704 orig column labels. [18:44:11] alignment.py (line 543): DEBUG: Reading base alignment: /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_103/A_103_5/hmmbuild.input.ntrgja0d.fasta. [18:44:11] alignment.py (line 615): DEBUG: Relabeling 1704 (1704) with 1704 labels. [18:44:11] exhaustive.py (line 182): DEBUG: Merging alignment subset into placement subset for chunk 4: A_103_5. [18:44:11] alignment.py (line 727): DEBUG: Merging started ... [18:44:11] alignment.py (line 834): DEBUG: Merging finished ... [18:44:11] problem.py (line 246): DEBUG: Reading /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_103/A_103_0/hmmbuild.input.uzcaw9xl.fasta [] and relabeling it based on 1652 orig column labels. [18:44:11] alignment.py (line 543): DEBUG: Reading base alignment: /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_103/A_103_0/hmmbuild.input.uzcaw9xl.fasta. [18:44:11] alignment.py (line 615): DEBUG: Relabeling 1652 (1652) with 1652 labels. [18:44:11] exhaustive.py (line 182): DEBUG: Merging alignment subset into placement subset for chunk 5: A_103_0. [18:44:11] alignment.py (line 727): DEBUG: Merging started ... [18:44:11] alignment.py (line 834): DEBUG: Merging finished ... [18:44:11] problem.py (line 246): DEBUG: Reading /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_103/A_103_1/hmmbuild.input.zzeclab0.fasta [] and relabeling it based on 1553 orig column labels. [18:44:11] alignment.py (line 543): DEBUG: Reading base alignment: /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_103/A_103_1/hmmbuild.input.zzeclab0.fasta. [18:44:11] alignment.py (line 615): DEBUG: Relabeling 1553 (1553) with 1553 labels. [18:44:11] exhaustive.py (line 182): DEBUG: Merging alignment subset into placement subset for chunk 5: A_103_1. [18:44:11] alignment.py (line 727): DEBUG: Merging started ... [18:44:11] alignment.py (line 834): DEBUG: Merging finished ... [18:44:11] problem.py (line 246): DEBUG: Reading /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_103/A_103_2/hmmbuild.input.pxbk_u1j.fasta [] and relabeling it based on 1583 orig column labels. [18:44:11] alignment.py (line 543): DEBUG: Reading base alignment: /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_103/A_103_2/hmmbuild.input.pxbk_u1j.fasta. [18:44:11] alignment.py (line 615): DEBUG: Relabeling 1583 (1583) with 1583 labels. [18:44:11] exhaustive.py (line 182): DEBUG: Merging alignment subset into placement subset for chunk 5: A_103_2. [18:44:11] alignment.py (line 727): DEBUG: Merging started ... [18:44:11] alignment.py (line 834): DEBUG: Merging finished ... [18:44:11] problem.py (line 246): DEBUG: Reading /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_103/A_103_3/hmmbuild.input.8vrv8p7u.fasta [] and relabeling it based on 1688 orig column labels. [18:44:11] alignment.py (line 543): DEBUG: Reading base alignment: /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_103/A_103_3/hmmbuild.input.8vrv8p7u.fasta. [18:44:11] alignment.py (line 615): DEBUG: Relabeling 1688 (1688) with 1688 labels. [18:44:11] exhaustive.py (line 182): DEBUG: Merging alignment subset into placement subset for chunk 5: A_103_3. [18:44:11] alignment.py (line 727): DEBUG: Merging started ... [18:44:11] alignment.py (line 834): DEBUG: Merging finished ... [18:44:11] problem.py (line 246): DEBUG: Reading /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_103/A_103_4/hmmbuild.input.rmq1vctw.fasta [] and relabeling it based on 1563 orig column labels. [18:44:11] alignment.py (line 543): DEBUG: Reading base alignment: /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_103/A_103_4/hmmbuild.input.rmq1vctw.fasta. [18:44:11] alignment.py (line 615): DEBUG: Relabeling 1563 (1563) with 1563 labels. [18:44:11] exhaustive.py (line 182): DEBUG: Merging alignment subset into placement subset for chunk 5: A_103_4. [18:44:11] alignment.py (line 727): DEBUG: Merging started ... [18:44:11] alignment.py (line 834): DEBUG: Merging finished ... [18:44:11] problem.py (line 246): DEBUG: Reading /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_103/A_103_5/hmmbuild.input.ntrgja0d.fasta [] and relabeling it based on 1704 orig column labels. [18:44:11] alignment.py (line 543): DEBUG: Reading base alignment: /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_103/A_103_5/hmmbuild.input.ntrgja0d.fasta. [18:44:11] alignment.py (line 615): DEBUG: Relabeling 1704 (1704) with 1704 labels. [18:44:11] exhaustive.py (line 182): DEBUG: Merging alignment subset into placement subset for chunk 5: A_103_5. [18:44:11] alignment.py (line 727): DEBUG: Merging started ... [18:44:12] alignment.py (line 834): DEBUG: Merging finished ... [18:44:12] problem.py (line 246): DEBUG: Reading /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_103/A_103_0/hmmbuild.input.uzcaw9xl.fasta [] and relabeling it based on 1652 orig column labels. [18:44:12] alignment.py (line 543): DEBUG: Reading base alignment: /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_103/A_103_0/hmmbuild.input.uzcaw9xl.fasta. [18:44:12] alignment.py (line 615): DEBUG: Relabeling 1652 (1652) with 1652 labels. [18:44:12] exhaustive.py (line 182): DEBUG: Merging alignment subset into placement subset for chunk 6: A_103_0. [18:44:12] alignment.py (line 727): DEBUG: Merging started ... [18:44:12] alignment.py (line 834): DEBUG: Merging finished ... [18:44:12] problem.py (line 246): DEBUG: Reading /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_103/A_103_1/hmmbuild.input.zzeclab0.fasta [] and relabeling it based on 1553 orig column labels. [18:44:12] alignment.py (line 543): DEBUG: Reading base alignment: /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_103/A_103_1/hmmbuild.input.zzeclab0.fasta. [18:44:12] alignment.py (line 615): DEBUG: Relabeling 1553 (1553) with 1553 labels. [18:44:12] exhaustive.py (line 182): DEBUG: Merging alignment subset into placement subset for chunk 6: A_103_1. [18:44:12] alignment.py (line 727): DEBUG: Merging started ... [18:44:12] alignment.py (line 834): DEBUG: Merging finished ... [18:44:12] problem.py (line 246): DEBUG: Reading /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_103/A_103_2/hmmbuild.input.pxbk_u1j.fasta [] and relabeling it based on 1583 orig column labels. [18:44:12] alignment.py (line 543): DEBUG: Reading base alignment: /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_103/A_103_2/hmmbuild.input.pxbk_u1j.fasta. [18:44:12] alignment.py (line 615): DEBUG: Relabeling 1583 (1583) with 1583 labels. [18:44:12] exhaustive.py (line 182): DEBUG: Merging alignment subset into placement subset for chunk 6: A_103_2. [18:44:12] alignment.py (line 727): DEBUG: Merging started ... [18:44:12] alignment.py (line 834): DEBUG: Merging finished ... [18:44:12] problem.py (line 246): DEBUG: Reading /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_103/A_103_3/hmmbuild.input.8vrv8p7u.fasta [] and relabeling it based on 1688 orig column labels. [18:44:12] alignment.py (line 543): DEBUG: Reading base alignment: /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_103/A_103_3/hmmbuild.input.8vrv8p7u.fasta. [18:44:12] alignment.py (line 615): DEBUG: Relabeling 1688 (1688) with 1688 labels. [18:44:12] exhaustive.py (line 182): DEBUG: Merging alignment subset into placement subset for chunk 6: A_103_3. [18:44:12] alignment.py (line 727): DEBUG: Merging started ... [18:44:12] alignment.py (line 834): DEBUG: Merging finished ... [18:44:12] problem.py (line 246): DEBUG: Reading /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_103/A_103_4/hmmbuild.input.rmq1vctw.fasta [] and relabeling it based on 1563 orig column labels. [18:44:12] alignment.py (line 543): DEBUG: Reading base alignment: /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_103/A_103_4/hmmbuild.input.rmq1vctw.fasta. [18:44:12] alignment.py (line 615): DEBUG: Relabeling 1563 (1563) with 1563 labels. [18:44:12] exhaustive.py (line 182): DEBUG: Merging alignment subset into placement subset for chunk 6: A_103_4. [18:44:12] alignment.py (line 727): DEBUG: Merging started ... [18:44:12] alignment.py (line 834): DEBUG: Merging finished ... [18:44:12] problem.py (line 246): DEBUG: Reading /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_103/A_103_5/hmmbuild.input.ntrgja0d.fasta [] and relabeling it based on 1704 orig column labels. [18:44:12] alignment.py (line 543): DEBUG: Reading base alignment: /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_103/A_103_5/hmmbuild.input.ntrgja0d.fasta. [18:44:12] alignment.py (line 615): DEBUG: Relabeling 1704 (1704) with 1704 labels. [18:44:12] exhaustive.py (line 182): DEBUG: Merging alignment subset into placement subset for chunk 6: A_103_5. [18:44:12] alignment.py (line 727): DEBUG: Merging started ... [18:44:12] alignment.py (line 834): DEBUG: Merging finished ... [18:44:12] problem.py (line 246): DEBUG: Reading /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_103/A_103_0/hmmbuild.input.uzcaw9xl.fasta [] and relabeling it based on 1652 orig column labels. [18:44:12] alignment.py (line 543): DEBUG: Reading base alignment: /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_103/A_103_0/hmmbuild.input.uzcaw9xl.fasta. [18:44:12] alignment.py (line 615): DEBUG: Relabeling 1652 (1652) with 1652 labels. [18:44:12] exhaustive.py (line 182): DEBUG: Merging alignment subset into placement subset for chunk 7: A_103_0. [18:44:12] alignment.py (line 727): DEBUG: Merging started ... [18:44:12] alignment.py (line 834): DEBUG: Merging finished ... [18:44:12] problem.py (line 246): DEBUG: Reading /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_103/A_103_1/hmmbuild.input.zzeclab0.fasta [] and relabeling it based on 1553 orig column labels. [18:44:12] alignment.py (line 543): DEBUG: Reading base alignment: /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_103/A_103_1/hmmbuild.input.zzeclab0.fasta. [18:44:12] alignment.py (line 615): DEBUG: Relabeling 1553 (1553) with 1553 labels. [18:44:12] exhaustive.py (line 182): DEBUG: Merging alignment subset into placement subset for chunk 7: A_103_1. [18:44:12] alignment.py (line 727): DEBUG: Merging started ... [18:44:12] alignment.py (line 834): DEBUG: Merging finished ... [18:44:12] problem.py (line 246): DEBUG: Reading /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_103/A_103_2/hmmbuild.input.pxbk_u1j.fasta [] and relabeling it based on 1583 orig column labels. [18:44:12] alignment.py (line 543): DEBUG: Reading base alignment: /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_103/A_103_2/hmmbuild.input.pxbk_u1j.fasta. [18:44:12] alignment.py (line 615): DEBUG: Relabeling 1583 (1583) with 1583 labels. [18:44:12] exhaustive.py (line 182): DEBUG: Merging alignment subset into placement subset for chunk 7: A_103_2. [18:44:12] alignment.py (line 727): DEBUG: Merging started ... [18:44:12] alignment.py (line 834): DEBUG: Merging finished ... [18:44:12] problem.py (line 246): DEBUG: Reading /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_103/A_103_3/hmmbuild.input.8vrv8p7u.fasta [] and relabeling it based on 1688 orig column labels. [18:44:12] alignment.py (line 543): DEBUG: Reading base alignment: /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_103/A_103_3/hmmbuild.input.8vrv8p7u.fasta. [18:44:12] alignment.py (line 615): DEBUG: Relabeling 1688 (1688) with 1688 labels. [18:44:12] exhaustive.py (line 182): DEBUG: Merging alignment subset into placement subset for chunk 7: A_103_3. [18:44:12] alignment.py (line 727): DEBUG: Merging started ... [18:44:12] alignment.py (line 834): DEBUG: Merging finished ... [18:44:12] problem.py (line 246): DEBUG: Reading /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_103/A_103_4/hmmbuild.input.rmq1vctw.fasta [] and relabeling it based on 1563 orig column labels. [18:44:12] alignment.py (line 543): DEBUG: Reading base alignment: /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_103/A_103_4/hmmbuild.input.rmq1vctw.fasta. [18:44:12] alignment.py (line 615): DEBUG: Relabeling 1563 (1563) with 1563 labels. [18:44:12] exhaustive.py (line 182): DEBUG: Merging alignment subset into placement subset for chunk 7: A_103_4. [18:44:12] alignment.py (line 727): DEBUG: Merging started ... [18:44:12] alignment.py (line 834): DEBUG: Merging finished ... [18:44:12] problem.py (line 246): DEBUG: Reading /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_103/A_103_5/hmmbuild.input.ntrgja0d.fasta [] and relabeling it based on 1704 orig column labels. [18:44:12] alignment.py (line 543): DEBUG: Reading base alignment: /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_103/A_103_5/hmmbuild.input.ntrgja0d.fasta. [18:44:12] alignment.py (line 615): DEBUG: Relabeling 1704 (1704) with 1704 labels. [18:44:12] exhaustive.py (line 182): DEBUG: Merging alignment subset into placement subset for chunk 7: A_103_5. [18:44:12] alignment.py (line 727): DEBUG: Merging started ... [18:44:12] alignment.py (line 834): DEBUG: Merging finished ... [18:44:12] alignment.py (line 203): DEBUG: Writing alignment of type with length 0 to file /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_103/pplacer.extended.0.tjfkj2ie.fasta [18:44:12] alignment.py (line 203): DEBUG: Writing alignment of type with length 4736 to file /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_103/pplacer.backbone.ebq7a_m6.fasta [18:44:12] alignment.py (line 203): DEBUG: Writing alignment of type with length 0 to file /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_103/pplacer.extended.1.gw_ini4u.fasta [18:44:12] alignment.py (line 203): DEBUG: Writing alignment of type with length 4736 to file /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_103/pplacer.backbone.6j59r8r3.fasta [18:44:12] alignment.py (line 203): DEBUG: Writing alignment of type with length 0 to file /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_103/pplacer.extended.2.s5mw8rl1.fasta [18:44:12] alignment.py (line 203): DEBUG: Writing alignment of type with length 4736 to file /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_103/pplacer.backbone.o3ew45mr.fasta [18:44:12] alignment.py (line 203): DEBUG: Writing alignment of type with length 0 to file /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_103/pplacer.extended.3.ec6xq2oc.fasta [18:44:12] alignment.py (line 203): DEBUG: Writing alignment of type with length 4736 to file /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_103/pplacer.backbone.4j2i1d8m.fasta [18:44:12] alignment.py (line 203): DEBUG: Writing alignment of type with length 0 to file /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_103/pplacer.extended.4.ucbz5dnk.fasta [18:44:12] alignment.py (line 203): DEBUG: Writing alignment of type with length 4736 to file /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_103/pplacer.backbone.m540tqo3.fasta [18:44:12] alignment.py (line 203): DEBUG: Writing alignment of type with length 0 to file /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_103/pplacer.extended.5.je2ly6r8.fasta [18:44:12] alignment.py (line 203): DEBUG: Writing alignment of type with length 4736 to file /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_103/pplacer.backbone.2zfen1zg.fasta [18:44:12] alignment.py (line 203): DEBUG: Writing alignment of type with length 0 to file /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_103/pplacer.extended.6.qkq14hn9.fasta [18:44:12] alignment.py (line 203): DEBUG: Writing alignment of type with length 4736 to file /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_103/pplacer.backbone.y4hl7ds7.fasta [18:44:12] alignment.py (line 203): DEBUG: Writing alignment of type with length 0 to file /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_103/pplacer.extended.7.kjng0rok.fasta [18:44:12] alignment.py (line 203): DEBUG: Writing alignment of type with length 4736 to file /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_103/pplacer.backbone.466033kz.fasta [18:44:12] exhaustive.py (line 151): INFO: Merging sub-alignments for placement problem : P_104. [18:44:12] problem.py (line 246): DEBUG: Reading /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_104/A_104_0/hmmbuild.input.2w1urfh0.fasta [] and relabeling it based on 1536 orig column labels. [18:44:12] alignment.py (line 543): DEBUG: Reading base alignment: /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_104/A_104_0/hmmbuild.input.2w1urfh0.fasta. [18:44:12] alignment.py (line 615): DEBUG: Relabeling 1536 (1536) with 1536 labels. [18:44:12] exhaustive.py (line 182): DEBUG: Merging alignment subset into placement subset for chunk 0: A_104_0. [18:44:12] alignment.py (line 727): DEBUG: Merging started ... [18:44:12] alignment.py (line 834): DEBUG: Merging finished ... [18:44:12] problem.py (line 246): DEBUG: Reading /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_104/A_104_1/hmmbuild.input.v8n10d9v.fasta [] and relabeling it based on 1558 orig column labels. [18:44:12] alignment.py (line 543): DEBUG: Reading base alignment: /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_104/A_104_1/hmmbuild.input.v8n10d9v.fasta. [18:44:12] alignment.py (line 615): DEBUG: Relabeling 1558 (1558) with 1558 labels. [18:44:12] exhaustive.py (line 182): DEBUG: Merging alignment subset into placement subset for chunk 0: A_104_1. [18:44:12] alignment.py (line 727): DEBUG: Merging started ... [18:44:12] alignment.py (line 834): DEBUG: Merging finished ... [18:44:12] problem.py (line 246): DEBUG: Reading /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_104/A_104_2/hmmbuild.input.0kbx1l_y.fasta [] and relabeling it based on 1515 orig column labels. [18:44:12] alignment.py (line 543): DEBUG: Reading base alignment: /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_104/A_104_2/hmmbuild.input.0kbx1l_y.fasta. [18:44:12] alignment.py (line 615): DEBUG: Relabeling 1515 (1515) with 1515 labels. [18:44:12] exhaustive.py (line 182): DEBUG: Merging alignment subset into placement subset for chunk 0: A_104_2. [18:44:12] alignment.py (line 727): DEBUG: Merging started ... [18:44:12] alignment.py (line 834): DEBUG: Merging finished ... [18:44:12] problem.py (line 246): DEBUG: Reading /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_104/A_104_3/hmmbuild.input.chw9tchq.fasta [] and relabeling it based on 1537 orig column labels. [18:44:12] alignment.py (line 543): DEBUG: Reading base alignment: /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_104/A_104_3/hmmbuild.input.chw9tchq.fasta. [18:44:12] alignment.py (line 615): DEBUG: Relabeling 1537 (1537) with 1537 labels. [18:44:12] exhaustive.py (line 182): DEBUG: Merging alignment subset into placement subset for chunk 0: A_104_3. [18:44:12] alignment.py (line 727): DEBUG: Merging started ... [18:44:12] alignment.py (line 834): DEBUG: Merging finished ... [18:44:12] problem.py (line 246): DEBUG: Reading /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_104/A_104_4/hmmbuild.input.51eqd_p1.fasta [] and relabeling it based on 1491 orig column labels. [18:44:12] alignment.py (line 543): DEBUG: Reading base alignment: /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_104/A_104_4/hmmbuild.input.51eqd_p1.fasta. [18:44:12] alignment.py (line 615): DEBUG: Relabeling 1491 (1491) with 1491 labels. [18:44:12] exhaustive.py (line 182): DEBUG: Merging alignment subset into placement subset for chunk 0: A_104_4. [18:44:12] alignment.py (line 727): DEBUG: Merging started ... [18:44:12] alignment.py (line 834): DEBUG: Merging finished ... [18:44:12] problem.py (line 246): DEBUG: Reading /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_104/A_104_5/hmmbuild.input.c0tena2l.fasta [] and relabeling it based on 1729 orig column labels. [18:44:12] alignment.py (line 543): DEBUG: Reading base alignment: /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_104/A_104_5/hmmbuild.input.c0tena2l.fasta. [18:44:12] alignment.py (line 615): DEBUG: Relabeling 1729 (1729) with 1729 labels. [18:44:12] exhaustive.py (line 182): DEBUG: Merging alignment subset into placement subset for chunk 0: A_104_5. [18:44:12] alignment.py (line 727): DEBUG: Merging started ... [18:44:12] alignment.py (line 834): DEBUG: Merging finished ... [18:44:12] problem.py (line 246): DEBUG: Reading /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_104/A_104_6/hmmbuild.input.rpbwv5eo.fasta [] and relabeling it based on 1544 orig column labels. [18:44:12] alignment.py (line 543): DEBUG: Reading base alignment: /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_104/A_104_6/hmmbuild.input.rpbwv5eo.fasta. [18:44:12] alignment.py (line 615): DEBUG: Relabeling 1544 (1544) with 1544 labels. [18:44:12] exhaustive.py (line 182): DEBUG: Merging alignment subset into placement subset for chunk 0: A_104_6. [18:44:12] alignment.py (line 727): DEBUG: Merging started ... [18:44:12] alignment.py (line 834): DEBUG: Merging finished ... [18:44:12] problem.py (line 246): DEBUG: Reading /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_104/A_104_7/hmmbuild.input.d0gtccqu.fasta [] and relabeling it based on 1598 orig column labels. [18:44:12] alignment.py (line 543): DEBUG: Reading base alignment: /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_104/A_104_7/hmmbuild.input.d0gtccqu.fasta. [18:44:12] alignment.py (line 615): DEBUG: Relabeling 1598 (1598) with 1598 labels. [18:44:12] exhaustive.py (line 182): DEBUG: Merging alignment subset into placement subset for chunk 0: A_104_7. [18:44:12] alignment.py (line 727): DEBUG: Merging started ... [18:44:12] alignment.py (line 834): DEBUG: Merging finished ... [18:44:12] problem.py (line 246): DEBUG: Reading /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_104/A_104_0/hmmbuild.input.2w1urfh0.fasta [] and relabeling it based on 1536 orig column labels. [18:44:12] alignment.py (line 543): DEBUG: Reading base alignment: /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_104/A_104_0/hmmbuild.input.2w1urfh0.fasta. [18:44:12] alignment.py (line 615): DEBUG: Relabeling 1536 (1536) with 1536 labels. [18:44:12] exhaustive.py (line 182): DEBUG: Merging alignment subset into placement subset for chunk 1: A_104_0. [18:44:12] alignment.py (line 727): DEBUG: Merging started ... [18:44:12] alignment.py (line 834): DEBUG: Merging finished ... [18:44:12] problem.py (line 246): DEBUG: Reading /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_104/A_104_1/hmmbuild.input.v8n10d9v.fasta [] and relabeling it based on 1558 orig column labels. [18:44:12] alignment.py (line 543): DEBUG: Reading base alignment: /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_104/A_104_1/hmmbuild.input.v8n10d9v.fasta. [18:44:12] alignment.py (line 615): DEBUG: Relabeling 1558 (1558) with 1558 labels. [18:44:12] exhaustive.py (line 182): DEBUG: Merging alignment subset into placement subset for chunk 1: A_104_1. [18:44:12] alignment.py (line 727): DEBUG: Merging started ... [18:44:12] alignment.py (line 834): DEBUG: Merging finished ... [18:44:12] problem.py (line 246): DEBUG: Reading /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_104/A_104_2/hmmbuild.input.0kbx1l_y.fasta [] and relabeling it based on 1515 orig column labels. [18:44:12] alignment.py (line 543): DEBUG: Reading base alignment: /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_104/A_104_2/hmmbuild.input.0kbx1l_y.fasta. [18:44:12] alignment.py (line 615): DEBUG: Relabeling 1515 (1515) with 1515 labels. [18:44:12] exhaustive.py (line 182): DEBUG: Merging alignment subset into placement subset for chunk 1: A_104_2. [18:44:12] alignment.py (line 727): DEBUG: Merging started ... [18:44:12] alignment.py (line 834): DEBUG: Merging finished ... [18:44:12] problem.py (line 246): DEBUG: Reading /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_104/A_104_3/hmmbuild.input.chw9tchq.fasta [] and relabeling it based on 1537 orig column labels. [18:44:12] alignment.py (line 543): DEBUG: Reading base alignment: /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_104/A_104_3/hmmbuild.input.chw9tchq.fasta. [18:44:12] alignment.py (line 615): DEBUG: Relabeling 1537 (1537) with 1537 labels. [18:44:12] exhaustive.py (line 182): DEBUG: Merging alignment subset into placement subset for chunk 1: A_104_3. [18:44:12] alignment.py (line 727): DEBUG: Merging started ... [18:44:12] alignment.py (line 834): DEBUG: Merging finished ... [18:44:12] problem.py (line 246): DEBUG: Reading /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_104/A_104_4/hmmbuild.input.51eqd_p1.fasta [] and relabeling it based on 1491 orig column labels. [18:44:12] alignment.py (line 543): DEBUG: Reading base alignment: /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_104/A_104_4/hmmbuild.input.51eqd_p1.fasta. [18:44:12] alignment.py (line 615): DEBUG: Relabeling 1491 (1491) with 1491 labels. [18:44:12] exhaustive.py (line 182): DEBUG: Merging alignment subset into placement subset for chunk 1: A_104_4. [18:44:12] alignment.py (line 727): DEBUG: Merging started ... [18:44:12] alignment.py (line 834): DEBUG: Merging finished ... [18:44:12] problem.py (line 246): DEBUG: Reading /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_104/A_104_5/hmmbuild.input.c0tena2l.fasta [] and relabeling it based on 1729 orig column labels. [18:44:12] alignment.py (line 543): DEBUG: Reading base alignment: /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_104/A_104_5/hmmbuild.input.c0tena2l.fasta. [18:44:12] alignment.py (line 615): DEBUG: Relabeling 1729 (1729) with 1729 labels. [18:44:12] exhaustive.py (line 182): DEBUG: Merging alignment subset into placement subset for chunk 1: A_104_5. [18:44:12] alignment.py (line 727): DEBUG: Merging started ... [18:44:12] alignment.py (line 834): DEBUG: Merging finished ... [18:44:12] problem.py (line 246): DEBUG: Reading /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_104/A_104_6/hmmbuild.input.rpbwv5eo.fasta [] and relabeling it based on 1544 orig column labels. [18:44:12] alignment.py (line 543): DEBUG: Reading base alignment: /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_104/A_104_6/hmmbuild.input.rpbwv5eo.fasta. [18:44:12] alignment.py (line 615): DEBUG: Relabeling 1544 (1544) with 1544 labels. [18:44:12] exhaustive.py (line 182): DEBUG: Merging alignment subset into placement subset for chunk 1: A_104_6. [18:44:12] alignment.py (line 727): DEBUG: Merging started ... [18:44:12] alignment.py (line 834): DEBUG: Merging finished ... [18:44:12] problem.py (line 246): DEBUG: Reading /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_104/A_104_7/hmmbuild.input.d0gtccqu.fasta [] and relabeling it based on 1598 orig column labels. [18:44:12] alignment.py (line 543): DEBUG: Reading base alignment: /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_104/A_104_7/hmmbuild.input.d0gtccqu.fasta. [18:44:12] alignment.py (line 615): DEBUG: Relabeling 1598 (1598) with 1598 labels. [18:44:12] exhaustive.py (line 182): DEBUG: Merging alignment subset into placement subset for chunk 1: A_104_7. [18:44:12] alignment.py (line 727): DEBUG: Merging started ... [18:44:12] alignment.py (line 834): DEBUG: Merging finished ... [18:44:12] problem.py (line 246): DEBUG: Reading /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_104/A_104_0/hmmbuild.input.2w1urfh0.fasta [] and relabeling it based on 1536 orig column labels. [18:44:12] alignment.py (line 543): DEBUG: Reading base alignment: /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_104/A_104_0/hmmbuild.input.2w1urfh0.fasta. [18:44:12] alignment.py (line 615): DEBUG: Relabeling 1536 (1536) with 1536 labels. [18:44:12] exhaustive.py (line 182): DEBUG: Merging alignment subset into placement subset for chunk 2: A_104_0. [18:44:12] alignment.py (line 727): DEBUG: Merging started ... [18:44:12] alignment.py (line 834): DEBUG: Merging finished ... [18:44:12] problem.py (line 246): DEBUG: Reading /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_104/A_104_1/hmmbuild.input.v8n10d9v.fasta [] and relabeling it based on 1558 orig column labels. [18:44:12] alignment.py (line 543): DEBUG: Reading base alignment: /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_104/A_104_1/hmmbuild.input.v8n10d9v.fasta. [18:44:12] alignment.py (line 615): DEBUG: Relabeling 1558 (1558) with 1558 labels. [18:44:12] exhaustive.py (line 182): DEBUG: Merging alignment subset into placement subset for chunk 2: A_104_1. [18:44:12] alignment.py (line 727): DEBUG: Merging started ... [18:44:12] alignment.py (line 834): DEBUG: Merging finished ... [18:44:12] problem.py (line 246): DEBUG: Reading /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_104/A_104_2/hmmbuild.input.0kbx1l_y.fasta [] and relabeling it based on 1515 orig column labels. [18:44:12] alignment.py (line 543): DEBUG: Reading base alignment: /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_104/A_104_2/hmmbuild.input.0kbx1l_y.fasta. [18:44:12] alignment.py (line 615): DEBUG: Relabeling 1515 (1515) with 1515 labels. [18:44:12] exhaustive.py (line 182): DEBUG: Merging alignment subset into placement subset for chunk 2: A_104_2. [18:44:12] alignment.py (line 727): DEBUG: Merging started ... [18:44:12] alignment.py (line 834): DEBUG: Merging finished ... [18:44:12] problem.py (line 246): DEBUG: Reading /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_104/A_104_3/hmmbuild.input.chw9tchq.fasta [] and relabeling it based on 1537 orig column labels. [18:44:12] alignment.py (line 543): DEBUG: Reading base alignment: /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_104/A_104_3/hmmbuild.input.chw9tchq.fasta. [18:44:12] alignment.py (line 615): DEBUG: Relabeling 1537 (1537) with 1537 labels. [18:44:12] exhaustive.py (line 182): DEBUG: Merging alignment subset into placement subset for chunk 2: A_104_3. [18:44:12] alignment.py (line 727): DEBUG: Merging started ... [18:44:12] alignment.py (line 834): DEBUG: Merging finished ... [18:44:12] problem.py (line 246): DEBUG: Reading /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_104/A_104_4/hmmbuild.input.51eqd_p1.fasta [] and relabeling it based on 1491 orig column labels. [18:44:12] alignment.py (line 543): DEBUG: Reading base alignment: /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_104/A_104_4/hmmbuild.input.51eqd_p1.fasta. [18:44:12] alignment.py (line 615): DEBUG: Relabeling 1491 (1491) with 1491 labels. [18:44:12] exhaustive.py (line 182): DEBUG: Merging alignment subset into placement subset for chunk 2: A_104_4. [18:44:12] alignment.py (line 727): DEBUG: Merging started ... [18:44:12] alignment.py (line 834): DEBUG: Merging finished ... [18:44:12] problem.py (line 246): DEBUG: Reading /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_104/A_104_5/hmmbuild.input.c0tena2l.fasta [] and relabeling it based on 1729 orig column labels. [18:44:12] alignment.py (line 543): DEBUG: Reading base alignment: /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_104/A_104_5/hmmbuild.input.c0tena2l.fasta. [18:44:12] alignment.py (line 615): DEBUG: Relabeling 1729 (1729) with 1729 labels. [18:44:12] exhaustive.py (line 182): DEBUG: Merging alignment subset into placement subset for chunk 2: A_104_5. [18:44:12] alignment.py (line 727): DEBUG: Merging started ... [18:44:12] alignment.py (line 834): DEBUG: Merging finished ... [18:44:12] problem.py (line 246): DEBUG: Reading /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_104/A_104_6/hmmbuild.input.rpbwv5eo.fasta [] and relabeling it based on 1544 orig column labels. [18:44:12] alignment.py (line 543): DEBUG: Reading base alignment: /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_104/A_104_6/hmmbuild.input.rpbwv5eo.fasta. [18:44:12] alignment.py (line 615): DEBUG: Relabeling 1544 (1544) with 1544 labels. [18:44:12] exhaustive.py (line 182): DEBUG: Merging alignment subset into placement subset for chunk 2: A_104_6. [18:44:12] alignment.py (line 727): DEBUG: Merging started ... [18:44:12] alignment.py (line 834): DEBUG: Merging finished ... [18:44:12] problem.py (line 246): DEBUG: Reading /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_104/A_104_7/hmmbuild.input.d0gtccqu.fasta [] and relabeling it based on 1598 orig column labels. [18:44:12] alignment.py (line 543): DEBUG: Reading base alignment: /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_104/A_104_7/hmmbuild.input.d0gtccqu.fasta. [18:44:12] alignment.py (line 615): DEBUG: Relabeling 1598 (1598) with 1598 labels. [18:44:12] exhaustive.py (line 182): DEBUG: Merging alignment subset into placement subset for chunk 2: A_104_7. [18:44:12] alignment.py (line 727): DEBUG: Merging started ... [18:44:12] alignment.py (line 834): DEBUG: Merging finished ... [18:44:12] problem.py (line 246): DEBUG: Reading /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_104/A_104_0/hmmbuild.input.2w1urfh0.fasta [] and relabeling it based on 1536 orig column labels. [18:44:12] alignment.py (line 543): DEBUG: Reading base alignment: /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_104/A_104_0/hmmbuild.input.2w1urfh0.fasta. [18:44:12] alignment.py (line 615): DEBUG: Relabeling 1536 (1536) with 1536 labels. [18:44:12] exhaustive.py (line 182): DEBUG: Merging alignment subset into placement subset for chunk 3: A_104_0. [18:44:12] alignment.py (line 727): DEBUG: Merging started ... [18:44:12] alignment.py (line 834): DEBUG: Merging finished ... [18:44:12] problem.py (line 246): DEBUG: Reading /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_104/A_104_1/hmmbuild.input.v8n10d9v.fasta [] and relabeling it based on 1558 orig column labels. [18:44:12] alignment.py (line 543): DEBUG: Reading base alignment: /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_104/A_104_1/hmmbuild.input.v8n10d9v.fasta. [18:44:12] alignment.py (line 615): DEBUG: Relabeling 1558 (1558) with 1558 labels. [18:44:12] exhaustive.py (line 182): DEBUG: Merging alignment subset into placement subset for chunk 3: A_104_1. [18:44:12] alignment.py (line 727): DEBUG: Merging started ... [18:44:12] alignment.py (line 834): DEBUG: Merging finished ... [18:44:12] problem.py (line 246): DEBUG: Reading /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_104/A_104_2/hmmbuild.input.0kbx1l_y.fasta [] and relabeling it based on 1515 orig column labels. [18:44:12] alignment.py (line 543): DEBUG: Reading base alignment: /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_104/A_104_2/hmmbuild.input.0kbx1l_y.fasta. [18:44:12] alignment.py (line 615): DEBUG: Relabeling 1515 (1515) with 1515 labels. [18:44:12] exhaustive.py (line 182): DEBUG: Merging alignment subset into placement subset for chunk 3: A_104_2. [18:44:12] alignment.py (line 727): DEBUG: Merging started ... [18:44:12] alignment.py (line 834): DEBUG: Merging finished ... [18:44:12] problem.py (line 246): DEBUG: Reading /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_104/A_104_3/hmmbuild.input.chw9tchq.fasta [] and relabeling it based on 1537 orig column labels. [18:44:12] alignment.py (line 543): DEBUG: Reading base alignment: /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_104/A_104_3/hmmbuild.input.chw9tchq.fasta. [18:44:12] alignment.py (line 615): DEBUG: Relabeling 1537 (1537) with 1537 labels. [18:44:12] exhaustive.py (line 182): DEBUG: Merging alignment subset into placement subset for chunk 3: A_104_3. [18:44:12] alignment.py (line 727): DEBUG: Merging started ... [18:44:12] alignment.py (line 834): DEBUG: Merging finished ... [18:44:12] problem.py (line 246): DEBUG: Reading /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_104/A_104_4/hmmbuild.input.51eqd_p1.fasta [] and relabeling it based on 1491 orig column labels. [18:44:12] alignment.py (line 543): DEBUG: Reading base alignment: /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_104/A_104_4/hmmbuild.input.51eqd_p1.fasta. [18:44:12] alignment.py (line 615): DEBUG: Relabeling 1491 (1491) with 1491 labels. [18:44:12] exhaustive.py (line 182): DEBUG: Merging alignment subset into placement subset for chunk 3: A_104_4. [18:44:12] alignment.py (line 727): DEBUG: Merging started ... [18:44:12] alignment.py (line 834): DEBUG: Merging finished ... [18:44:12] problem.py (line 246): DEBUG: Reading /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_104/A_104_5/hmmbuild.input.c0tena2l.fasta [] and relabeling it based on 1729 orig column labels. [18:44:12] alignment.py (line 543): DEBUG: Reading base alignment: /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_104/A_104_5/hmmbuild.input.c0tena2l.fasta. [18:44:12] alignment.py (line 615): DEBUG: Relabeling 1729 (1729) with 1729 labels. [18:44:12] exhaustive.py (line 182): DEBUG: Merging alignment subset into placement subset for chunk 3: A_104_5. [18:44:12] alignment.py (line 727): DEBUG: Merging started ... [18:44:12] alignment.py (line 834): DEBUG: Merging finished ... [18:44:12] problem.py (line 246): DEBUG: Reading /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_104/A_104_6/hmmbuild.input.rpbwv5eo.fasta [] and relabeling it based on 1544 orig column labels. [18:44:12] alignment.py (line 543): DEBUG: Reading base alignment: /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_104/A_104_6/hmmbuild.input.rpbwv5eo.fasta. [18:44:12] alignment.py (line 615): DEBUG: Relabeling 1544 (1544) with 1544 labels. [18:44:12] exhaustive.py (line 182): DEBUG: Merging alignment subset into placement subset for chunk 3: A_104_6. [18:44:12] alignment.py (line 727): DEBUG: Merging started ... [18:44:12] alignment.py (line 834): DEBUG: Merging finished ... [18:44:12] problem.py (line 246): DEBUG: Reading /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_104/A_104_7/hmmbuild.input.d0gtccqu.fasta [] and relabeling it based on 1598 orig column labels. [18:44:12] alignment.py (line 543): DEBUG: Reading base alignment: /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_104/A_104_7/hmmbuild.input.d0gtccqu.fasta. [18:44:12] alignment.py (line 615): DEBUG: Relabeling 1598 (1598) with 1598 labels. [18:44:12] exhaustive.py (line 182): DEBUG: Merging alignment subset into placement subset for chunk 3: A_104_7. [18:44:12] alignment.py (line 727): DEBUG: Merging started ... [18:44:12] alignment.py (line 834): DEBUG: Merging finished ... [18:44:12] problem.py (line 246): DEBUG: Reading /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_104/A_104_0/hmmbuild.input.2w1urfh0.fasta [] and relabeling it based on 1536 orig column labels. [18:44:12] alignment.py (line 543): DEBUG: Reading base alignment: /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_104/A_104_0/hmmbuild.input.2w1urfh0.fasta. [18:44:12] alignment.py (line 615): DEBUG: Relabeling 1536 (1536) with 1536 labels. [18:44:12] exhaustive.py (line 182): DEBUG: Merging alignment subset into placement subset for chunk 4: A_104_0. [18:44:12] alignment.py (line 727): DEBUG: Merging started ... [18:44:12] alignment.py (line 834): DEBUG: Merging finished ... [18:44:12] problem.py (line 246): DEBUG: Reading /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_104/A_104_1/hmmbuild.input.v8n10d9v.fasta [] and relabeling it based on 1558 orig column labels. [18:44:12] alignment.py (line 543): DEBUG: Reading base alignment: /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_104/A_104_1/hmmbuild.input.v8n10d9v.fasta. [18:44:12] alignment.py (line 615): DEBUG: Relabeling 1558 (1558) with 1558 labels. [18:44:12] exhaustive.py (line 182): DEBUG: Merging alignment subset into placement subset for chunk 4: A_104_1. [18:44:12] alignment.py (line 727): DEBUG: Merging started ... [18:44:12] alignment.py (line 834): DEBUG: Merging finished ... [18:44:12] problem.py (line 246): DEBUG: Reading /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_104/A_104_2/hmmbuild.input.0kbx1l_y.fasta [] and relabeling it based on 1515 orig column labels. [18:44:12] alignment.py (line 543): DEBUG: Reading base alignment: /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_104/A_104_2/hmmbuild.input.0kbx1l_y.fasta. [18:44:12] alignment.py (line 615): DEBUG: Relabeling 1515 (1515) with 1515 labels. [18:44:12] exhaustive.py (line 182): DEBUG: Merging alignment subset into placement subset for chunk 4: A_104_2. [18:44:12] alignment.py (line 727): DEBUG: Merging started ... [18:44:12] alignment.py (line 834): DEBUG: Merging finished ... [18:44:12] problem.py (line 246): DEBUG: Reading /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_104/A_104_3/hmmbuild.input.chw9tchq.fasta [] and relabeling it based on 1537 orig column labels. [18:44:12] alignment.py (line 543): DEBUG: Reading base alignment: /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_104/A_104_3/hmmbuild.input.chw9tchq.fasta. [18:44:12] alignment.py (line 615): DEBUG: Relabeling 1537 (1537) with 1537 labels. [18:44:12] exhaustive.py (line 182): DEBUG: Merging alignment subset into placement subset for chunk 4: A_104_3. [18:44:12] alignment.py (line 727): DEBUG: Merging started ... [18:44:12] alignment.py (line 834): DEBUG: Merging finished ... [18:44:12] problem.py (line 246): DEBUG: Reading /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_104/A_104_4/hmmbuild.input.51eqd_p1.fasta [] and relabeling it based on 1491 orig column labels. [18:44:12] alignment.py (line 543): DEBUG: Reading base alignment: /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_104/A_104_4/hmmbuild.input.51eqd_p1.fasta. [18:44:12] alignment.py (line 615): DEBUG: Relabeling 1491 (1491) with 1491 labels. [18:44:12] exhaustive.py (line 182): DEBUG: Merging alignment subset into placement subset for chunk 4: A_104_4. [18:44:12] alignment.py (line 727): DEBUG: Merging started ... [18:44:12] alignment.py (line 834): DEBUG: Merging finished ... [18:44:12] problem.py (line 246): DEBUG: Reading /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_104/A_104_5/hmmbuild.input.c0tena2l.fasta [] and relabeling it based on 1729 orig column labels. [18:44:12] alignment.py (line 543): DEBUG: Reading base alignment: /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_104/A_104_5/hmmbuild.input.c0tena2l.fasta. [18:44:12] alignment.py (line 615): DEBUG: Relabeling 1729 (1729) with 1729 labels. [18:44:12] exhaustive.py (line 182): DEBUG: Merging alignment subset into placement subset for chunk 4: A_104_5. [18:44:12] alignment.py (line 727): DEBUG: Merging started ... [18:44:12] alignment.py (line 834): DEBUG: Merging finished ... [18:44:12] problem.py (line 246): DEBUG: Reading /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_104/A_104_6/hmmbuild.input.rpbwv5eo.fasta [] and relabeling it based on 1544 orig column labels. [18:44:12] alignment.py (line 543): DEBUG: Reading base alignment: /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_104/A_104_6/hmmbuild.input.rpbwv5eo.fasta. [18:44:12] alignment.py (line 615): DEBUG: Relabeling 1544 (1544) with 1544 labels. [18:44:12] exhaustive.py (line 182): DEBUG: Merging alignment subset into placement subset for chunk 4: A_104_6. [18:44:12] alignment.py (line 727): DEBUG: Merging started ... [18:44:12] alignment.py (line 834): DEBUG: Merging finished ... [18:44:12] problem.py (line 246): DEBUG: Reading /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_104/A_104_7/hmmbuild.input.d0gtccqu.fasta [] and relabeling it based on 1598 orig column labels. [18:44:12] alignment.py (line 543): DEBUG: Reading base alignment: /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_104/A_104_7/hmmbuild.input.d0gtccqu.fasta. [18:44:12] alignment.py (line 615): DEBUG: Relabeling 1598 (1598) with 1598 labels. [18:44:12] exhaustive.py (line 182): DEBUG: Merging alignment subset into placement subset for chunk 4: A_104_7. [18:44:12] alignment.py (line 727): DEBUG: Merging started ... [18:44:12] alignment.py (line 834): DEBUG: Merging finished ... [18:44:12] problem.py (line 246): DEBUG: Reading /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_104/A_104_0/hmmbuild.input.2w1urfh0.fasta [] and relabeling it based on 1536 orig column labels. [18:44:12] alignment.py (line 543): DEBUG: Reading base alignment: /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_104/A_104_0/hmmbuild.input.2w1urfh0.fasta. [18:44:12] alignment.py (line 615): DEBUG: Relabeling 1536 (1536) with 1536 labels. [18:44:12] exhaustive.py (line 182): DEBUG: Merging alignment subset into placement subset for chunk 5: A_104_0. [18:44:12] alignment.py (line 727): DEBUG: Merging started ... [18:44:12] alignment.py (line 834): DEBUG: Merging finished ... [18:44:12] problem.py (line 246): DEBUG: Reading /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_104/A_104_1/hmmbuild.input.v8n10d9v.fasta [] and relabeling it based on 1558 orig column labels. [18:44:12] alignment.py (line 543): DEBUG: Reading base alignment: /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_104/A_104_1/hmmbuild.input.v8n10d9v.fasta. [18:44:12] alignment.py (line 615): DEBUG: Relabeling 1558 (1558) with 1558 labels. [18:44:12] exhaustive.py (line 182): DEBUG: Merging alignment subset into placement subset for chunk 5: A_104_1. [18:44:12] alignment.py (line 727): DEBUG: Merging started ... [18:44:12] alignment.py (line 834): DEBUG: Merging finished ... [18:44:12] problem.py (line 246): DEBUG: Reading /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_104/A_104_2/hmmbuild.input.0kbx1l_y.fasta [] and relabeling it based on 1515 orig column labels. [18:44:12] alignment.py (line 543): DEBUG: Reading base alignment: /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_104/A_104_2/hmmbuild.input.0kbx1l_y.fasta. [18:44:12] alignment.py (line 615): DEBUG: Relabeling 1515 (1515) with 1515 labels. [18:44:12] exhaustive.py (line 182): DEBUG: Merging alignment subset into placement subset for chunk 5: A_104_2. [18:44:12] alignment.py (line 727): DEBUG: Merging started ... [18:44:12] alignment.py (line 834): DEBUG: Merging finished ... [18:44:12] problem.py (line 246): DEBUG: Reading /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_104/A_104_3/hmmbuild.input.chw9tchq.fasta [] and relabeling it based on 1537 orig column labels. [18:44:12] alignment.py (line 543): DEBUG: Reading base alignment: /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_104/A_104_3/hmmbuild.input.chw9tchq.fasta. [18:44:12] alignment.py (line 615): DEBUG: Relabeling 1537 (1537) with 1537 labels. [18:44:12] exhaustive.py (line 182): DEBUG: Merging alignment subset into placement subset for chunk 5: A_104_3. [18:44:12] alignment.py (line 727): DEBUG: Merging started ... [18:44:12] alignment.py (line 834): DEBUG: Merging finished ... [18:44:12] problem.py (line 246): DEBUG: Reading /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_104/A_104_4/hmmbuild.input.51eqd_p1.fasta [] and relabeling it based on 1491 orig column labels. [18:44:12] alignment.py (line 543): DEBUG: Reading base alignment: /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_104/A_104_4/hmmbuild.input.51eqd_p1.fasta. [18:44:12] alignment.py (line 615): DEBUG: Relabeling 1491 (1491) with 1491 labels. [18:44:12] exhaustive.py (line 182): DEBUG: Merging alignment subset into placement subset for chunk 5: A_104_4. [18:44:12] alignment.py (line 727): DEBUG: Merging started ... [18:44:12] alignment.py (line 834): DEBUG: Merging finished ... [18:44:12] problem.py (line 246): DEBUG: Reading /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_104/A_104_5/hmmbuild.input.c0tena2l.fasta [] and relabeling it based on 1729 orig column labels. [18:44:12] alignment.py (line 543): DEBUG: Reading base alignment: /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_104/A_104_5/hmmbuild.input.c0tena2l.fasta. [18:44:12] alignment.py (line 615): DEBUG: Relabeling 1729 (1729) with 1729 labels. [18:44:12] exhaustive.py (line 182): DEBUG: Merging alignment subset into placement subset for chunk 5: A_104_5. [18:44:12] alignment.py (line 727): DEBUG: Merging started ... [18:44:12] alignment.py (line 834): DEBUG: Merging finished ... [18:44:12] problem.py (line 246): DEBUG: Reading /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_104/A_104_6/hmmbuild.input.rpbwv5eo.fasta [] and relabeling it based on 1544 orig column labels. [18:44:12] alignment.py (line 543): DEBUG: Reading base alignment: /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_104/A_104_6/hmmbuild.input.rpbwv5eo.fasta. [18:44:12] alignment.py (line 615): DEBUG: Relabeling 1544 (1544) with 1544 labels. [18:44:12] exhaustive.py (line 182): DEBUG: Merging alignment subset into placement subset for chunk 5: A_104_6. [18:44:12] alignment.py (line 727): DEBUG: Merging started ... [18:44:12] alignment.py (line 834): DEBUG: Merging finished ... [18:44:12] problem.py (line 246): DEBUG: Reading /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_104/A_104_7/hmmbuild.input.d0gtccqu.fasta [] and relabeling it based on 1598 orig column labels. [18:44:12] alignment.py (line 543): DEBUG: Reading base alignment: /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_104/A_104_7/hmmbuild.input.d0gtccqu.fasta. [18:44:12] alignment.py (line 615): DEBUG: Relabeling 1598 (1598) with 1598 labels. [18:44:12] exhaustive.py (line 182): DEBUG: Merging alignment subset into placement subset for chunk 5: A_104_7. [18:44:12] alignment.py (line 727): DEBUG: Merging started ... [18:44:12] alignment.py (line 834): DEBUG: Merging finished ... [18:44:12] problem.py (line 246): DEBUG: Reading /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_104/A_104_0/hmmbuild.input.2w1urfh0.fasta [] and relabeling it based on 1536 orig column labels. [18:44:12] alignment.py (line 543): DEBUG: Reading base alignment: /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_104/A_104_0/hmmbuild.input.2w1urfh0.fasta. [18:44:12] alignment.py (line 615): DEBUG: Relabeling 1536 (1536) with 1536 labels. [18:44:12] exhaustive.py (line 182): DEBUG: Merging alignment subset into placement subset for chunk 6: A_104_0. [18:44:12] alignment.py (line 727): DEBUG: Merging started ... [18:44:12] alignment.py (line 834): DEBUG: Merging finished ... [18:44:12] problem.py (line 246): DEBUG: Reading /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_104/A_104_1/hmmbuild.input.v8n10d9v.fasta [] and relabeling it based on 1558 orig column labels. [18:44:12] alignment.py (line 543): DEBUG: Reading base alignment: /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_104/A_104_1/hmmbuild.input.v8n10d9v.fasta. [18:44:12] alignment.py (line 615): DEBUG: Relabeling 1558 (1558) with 1558 labels. [18:44:12] exhaustive.py (line 182): DEBUG: Merging alignment subset into placement subset for chunk 6: A_104_1. [18:44:12] alignment.py (line 727): DEBUG: Merging started ... [18:44:12] alignment.py (line 834): DEBUG: Merging finished ... [18:44:12] problem.py (line 246): DEBUG: Reading /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_104/A_104_2/hmmbuild.input.0kbx1l_y.fasta [] and relabeling it based on 1515 orig column labels. [18:44:12] alignment.py (line 543): DEBUG: Reading base alignment: /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_104/A_104_2/hmmbuild.input.0kbx1l_y.fasta. [18:44:12] alignment.py (line 615): DEBUG: Relabeling 1515 (1515) with 1515 labels. [18:44:12] exhaustive.py (line 182): DEBUG: Merging alignment subset into placement subset for chunk 6: A_104_2. [18:44:12] alignment.py (line 727): DEBUG: Merging started ... [18:44:12] alignment.py (line 834): DEBUG: Merging finished ... [18:44:12] problem.py (line 246): DEBUG: Reading /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_104/A_104_3/hmmbuild.input.chw9tchq.fasta [] and relabeling it based on 1537 orig column labels. [18:44:12] alignment.py (line 543): DEBUG: Reading base alignment: /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_104/A_104_3/hmmbuild.input.chw9tchq.fasta. [18:44:12] alignment.py (line 615): DEBUG: Relabeling 1537 (1537) with 1537 labels. [18:44:12] exhaustive.py (line 182): DEBUG: Merging alignment subset into placement subset for chunk 6: A_104_3. [18:44:12] alignment.py (line 727): DEBUG: Merging started ... [18:44:12] alignment.py (line 834): DEBUG: Merging finished ... [18:44:12] problem.py (line 246): DEBUG: Reading /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_104/A_104_4/hmmbuild.input.51eqd_p1.fasta [] and relabeling it based on 1491 orig column labels. [18:44:12] alignment.py (line 543): DEBUG: Reading base alignment: /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_104/A_104_4/hmmbuild.input.51eqd_p1.fasta. [18:44:12] alignment.py (line 615): DEBUG: Relabeling 1491 (1491) with 1491 labels. [18:44:12] exhaustive.py (line 182): DEBUG: Merging alignment subset into placement subset for chunk 6: A_104_4. [18:44:12] alignment.py (line 727): DEBUG: Merging started ... [18:44:12] alignment.py (line 834): DEBUG: Merging finished ... [18:44:12] problem.py (line 246): DEBUG: Reading /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_104/A_104_5/hmmbuild.input.c0tena2l.fasta [] and relabeling it based on 1729 orig column labels. [18:44:12] alignment.py (line 543): DEBUG: Reading base alignment: /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_104/A_104_5/hmmbuild.input.c0tena2l.fasta. [18:44:12] alignment.py (line 615): DEBUG: Relabeling 1729 (1729) with 1729 labels. [18:44:12] exhaustive.py (line 182): DEBUG: Merging alignment subset into placement subset for chunk 6: A_104_5. [18:44:12] alignment.py (line 727): DEBUG: Merging started ... [18:44:12] alignment.py (line 834): DEBUG: Merging finished ... [18:44:12] problem.py (line 246): DEBUG: Reading /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_104/A_104_6/hmmbuild.input.rpbwv5eo.fasta [] and relabeling it based on 1544 orig column labels. [18:44:12] alignment.py (line 543): DEBUG: Reading base alignment: /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_104/A_104_6/hmmbuild.input.rpbwv5eo.fasta. [18:44:12] alignment.py (line 615): DEBUG: Relabeling 1544 (1544) with 1544 labels. [18:44:12] exhaustive.py (line 182): DEBUG: Merging alignment subset into placement subset for chunk 6: A_104_6. [18:44:12] alignment.py (line 727): DEBUG: Merging started ... [18:44:12] alignment.py (line 834): DEBUG: Merging finished ... [18:44:12] problem.py (line 246): DEBUG: Reading /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_104/A_104_7/hmmbuild.input.d0gtccqu.fasta [] and relabeling it based on 1598 orig column labels. [18:44:12] alignment.py (line 543): DEBUG: Reading base alignment: /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_104/A_104_7/hmmbuild.input.d0gtccqu.fasta. [18:44:12] alignment.py (line 615): DEBUG: Relabeling 1598 (1598) with 1598 labels. [18:44:12] exhaustive.py (line 182): DEBUG: Merging alignment subset into placement subset for chunk 6: A_104_7. [18:44:12] alignment.py (line 727): DEBUG: Merging started ... [18:44:12] alignment.py (line 834): DEBUG: Merging finished ... [18:44:12] problem.py (line 246): DEBUG: Reading /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_104/A_104_0/hmmbuild.input.2w1urfh0.fasta [] and relabeling it based on 1536 orig column labels. [18:44:12] alignment.py (line 543): DEBUG: Reading base alignment: /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_104/A_104_0/hmmbuild.input.2w1urfh0.fasta. [18:44:13] alignment.py (line 615): DEBUG: Relabeling 1536 (1536) with 1536 labels. [18:44:13] exhaustive.py (line 182): DEBUG: Merging alignment subset into placement subset for chunk 7: A_104_0. [18:44:13] alignment.py (line 727): DEBUG: Merging started ... [18:44:13] alignment.py (line 834): DEBUG: Merging finished ... [18:44:13] problem.py (line 246): DEBUG: Reading /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_104/A_104_1/hmmbuild.input.v8n10d9v.fasta [] and relabeling it based on 1558 orig column labels. [18:44:13] alignment.py (line 543): DEBUG: Reading base alignment: /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_104/A_104_1/hmmbuild.input.v8n10d9v.fasta. [18:44:13] alignment.py (line 615): DEBUG: Relabeling 1558 (1558) with 1558 labels. [18:44:13] exhaustive.py (line 182): DEBUG: Merging alignment subset into placement subset for chunk 7: A_104_1. [18:44:13] alignment.py (line 727): DEBUG: Merging started ... [18:44:13] alignment.py (line 834): DEBUG: Merging finished ... [18:44:13] problem.py (line 246): DEBUG: Reading /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_104/A_104_2/hmmbuild.input.0kbx1l_y.fasta [] and relabeling it based on 1515 orig column labels. [18:44:13] alignment.py (line 543): DEBUG: Reading base alignment: /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_104/A_104_2/hmmbuild.input.0kbx1l_y.fasta. [18:44:13] alignment.py (line 615): DEBUG: Relabeling 1515 (1515) with 1515 labels. [18:44:13] exhaustive.py (line 182): DEBUG: Merging alignment subset into placement subset for chunk 7: A_104_2. [18:44:13] alignment.py (line 727): DEBUG: Merging started ... [18:44:13] alignment.py (line 834): DEBUG: Merging finished ... [18:44:13] problem.py (line 246): DEBUG: Reading /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_104/A_104_3/hmmbuild.input.chw9tchq.fasta [] and relabeling it based on 1537 orig column labels. [18:44:13] alignment.py (line 543): DEBUG: Reading base alignment: /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_104/A_104_3/hmmbuild.input.chw9tchq.fasta. [18:44:13] alignment.py (line 615): DEBUG: Relabeling 1537 (1537) with 1537 labels. [18:44:13] exhaustive.py (line 182): DEBUG: Merging alignment subset into placement subset for chunk 7: A_104_3. [18:44:13] alignment.py (line 727): DEBUG: Merging started ... [18:44:13] alignment.py (line 834): DEBUG: Merging finished ... [18:44:13] problem.py (line 246): DEBUG: Reading /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_104/A_104_4/hmmbuild.input.51eqd_p1.fasta [] and relabeling it based on 1491 orig column labels. [18:44:13] alignment.py (line 543): DEBUG: Reading base alignment: /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_104/A_104_4/hmmbuild.input.51eqd_p1.fasta. [18:44:13] alignment.py (line 615): DEBUG: Relabeling 1491 (1491) with 1491 labels. [18:44:13] exhaustive.py (line 182): DEBUG: Merging alignment subset into placement subset for chunk 7: A_104_4. [18:44:13] alignment.py (line 727): DEBUG: Merging started ... [18:44:13] alignment.py (line 834): DEBUG: Merging finished ... [18:44:13] problem.py (line 246): DEBUG: Reading /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_104/A_104_5/hmmbuild.input.c0tena2l.fasta [] and relabeling it based on 1729 orig column labels. [18:44:13] alignment.py (line 543): DEBUG: Reading base alignment: /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_104/A_104_5/hmmbuild.input.c0tena2l.fasta. [18:44:13] alignment.py (line 615): DEBUG: Relabeling 1729 (1729) with 1729 labels. [18:44:13] exhaustive.py (line 182): DEBUG: Merging alignment subset into placement subset for chunk 7: A_104_5. [18:44:13] alignment.py (line 727): DEBUG: Merging started ... [18:44:13] alignment.py (line 834): DEBUG: Merging finished ... [18:44:13] problem.py (line 246): DEBUG: Reading /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_104/A_104_6/hmmbuild.input.rpbwv5eo.fasta [] and relabeling it based on 1544 orig column labels. [18:44:13] alignment.py (line 543): DEBUG: Reading base alignment: /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_104/A_104_6/hmmbuild.input.rpbwv5eo.fasta. [18:44:13] alignment.py (line 615): DEBUG: Relabeling 1544 (1544) with 1544 labels. [18:44:13] exhaustive.py (line 182): DEBUG: Merging alignment subset into placement subset for chunk 7: A_104_6. [18:44:13] alignment.py (line 727): DEBUG: Merging started ... [18:44:13] alignment.py (line 834): DEBUG: Merging finished ... [18:44:13] problem.py (line 246): DEBUG: Reading /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_104/A_104_7/hmmbuild.input.d0gtccqu.fasta [] and relabeling it based on 1598 orig column labels. [18:44:13] alignment.py (line 543): DEBUG: Reading base alignment: /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_104/A_104_7/hmmbuild.input.d0gtccqu.fasta. [18:44:13] alignment.py (line 615): DEBUG: Relabeling 1598 (1598) with 1598 labels. [18:44:13] exhaustive.py (line 182): DEBUG: Merging alignment subset into placement subset for chunk 7: A_104_7. [18:44:13] alignment.py (line 727): DEBUG: Merging started ... [18:44:13] alignment.py (line 834): DEBUG: Merging finished ... [18:44:13] alignment.py (line 203): DEBUG: Writing alignment of type with length 0 to file /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_104/pplacer.extended.0.kf4ec6wp.fasta [18:44:13] alignment.py (line 203): DEBUG: Writing alignment of type with length 4437 to file /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_104/pplacer.backbone.sdgkadwj.fasta [18:44:13] alignment.py (line 203): DEBUG: Writing alignment of type with length 0 to file /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_104/pplacer.extended.1.95_9v4ao.fasta [18:44:13] alignment.py (line 203): DEBUG: Writing alignment of type with length 4437 to file /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_104/pplacer.backbone.l5qhx_t0.fasta [18:44:13] alignment.py (line 203): DEBUG: Writing alignment of type with length 0 to file /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_104/pplacer.extended.2.l87bpesx.fasta [18:44:13] alignment.py (line 203): DEBUG: Writing alignment of type with length 4437 to file /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_104/pplacer.backbone.hodmehjv.fasta [18:44:13] alignment.py (line 203): DEBUG: Writing alignment of type with length 0 to file /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_104/pplacer.extended.3.wiud8psl.fasta [18:44:13] alignment.py (line 203): DEBUG: Writing alignment of type with length 4437 to file /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_104/pplacer.backbone.wdv07k6s.fasta [18:44:13] alignment.py (line 203): DEBUG: Writing alignment of type with length 0 to file /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_104/pplacer.extended.4.kghfp_el.fasta [18:44:13] alignment.py (line 203): DEBUG: Writing alignment of type with length 4437 to file /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_104/pplacer.backbone.6rq7k03g.fasta [18:44:13] alignment.py (line 203): DEBUG: Writing alignment of type with length 0 to file /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_104/pplacer.extended.5.gqb1988z.fasta [18:44:13] alignment.py (line 203): DEBUG: Writing alignment of type with length 4437 to file /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_104/pplacer.backbone.6avrjnlp.fasta [18:44:13] alignment.py (line 203): DEBUG: Writing alignment of type with length 0 to file /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_104/pplacer.extended.6.3p1nh3bw.fasta [18:44:13] alignment.py (line 203): DEBUG: Writing alignment of type with length 4437 to file /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_104/pplacer.backbone.5bh26bhe.fasta [18:44:13] alignment.py (line 203): DEBUG: Writing alignment of type with length 0 to file /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_104/pplacer.extended.7.3ay78m7p.fasta [18:44:13] alignment.py (line 203): DEBUG: Writing alignment of type with length 4437 to file /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_104/pplacer.backbone.a1am0wjl.fasta [18:44:13] exhaustive.py (line 151): INFO: Merging sub-alignments for placement problem : P_105. [18:44:13] problem.py (line 246): DEBUG: Reading /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_105/A_105_0/hmmbuild.input._eix_4kk.fasta [] and relabeling it based on 1517 orig column labels. [18:44:13] alignment.py (line 543): DEBUG: Reading base alignment: /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_105/A_105_0/hmmbuild.input._eix_4kk.fasta. [18:44:13] alignment.py (line 615): DEBUG: Relabeling 1517 (1517) with 1517 labels. [18:44:13] exhaustive.py (line 182): DEBUG: Merging alignment subset into placement subset for chunk 0: A_105_0. [18:44:13] alignment.py (line 727): DEBUG: Merging started ... [18:44:13] alignment.py (line 834): DEBUG: Merging finished ... [18:44:13] problem.py (line 246): DEBUG: Reading /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_105/A_105_1/hmmbuild.input.r78_1c4r.fasta [] and relabeling it based on 1521 orig column labels. [18:44:13] alignment.py (line 543): DEBUG: Reading base alignment: /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_105/A_105_1/hmmbuild.input.r78_1c4r.fasta. [18:44:13] alignment.py (line 615): DEBUG: Relabeling 1521 (1521) with 1521 labels. [18:44:13] exhaustive.py (line 182): DEBUG: Merging alignment subset into placement subset for chunk 0: A_105_1. [18:44:13] alignment.py (line 727): DEBUG: Merging started ... [18:44:13] alignment.py (line 834): DEBUG: Merging finished ... [18:44:13] problem.py (line 246): DEBUG: Reading /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_105/A_105_2/hmmbuild.input.mhcj0lw0.fasta [] and relabeling it based on 1511 orig column labels. [18:44:13] alignment.py (line 543): DEBUG: Reading base alignment: /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_105/A_105_2/hmmbuild.input.mhcj0lw0.fasta. [18:44:13] alignment.py (line 615): DEBUG: Relabeling 1511 (1511) with 1511 labels. [18:44:13] exhaustive.py (line 182): DEBUG: Merging alignment subset into placement subset for chunk 0: A_105_2. [18:44:13] alignment.py (line 727): DEBUG: Merging started ... [18:44:13] alignment.py (line 834): DEBUG: Merging finished ... [18:44:13] problem.py (line 246): DEBUG: Reading /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_105/A_105_3/hmmbuild.input._u669r8u.fasta [] and relabeling it based on 1624 orig column labels. [18:44:13] alignment.py (line 543): DEBUG: Reading base alignment: /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_105/A_105_3/hmmbuild.input._u669r8u.fasta. [18:44:13] alignment.py (line 615): DEBUG: Relabeling 1624 (1624) with 1624 labels. [18:44:13] exhaustive.py (line 182): DEBUG: Merging alignment subset into placement subset for chunk 0: A_105_3. [18:44:13] alignment.py (line 727): DEBUG: Merging started ... [18:44:13] alignment.py (line 834): DEBUG: Merging finished ... [18:44:13] problem.py (line 246): DEBUG: Reading /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_105/A_105_4/hmmbuild.input.93irua_g.fasta [] and relabeling it based on 1659 orig column labels. [18:44:13] alignment.py (line 543): DEBUG: Reading base alignment: /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_105/A_105_4/hmmbuild.input.93irua_g.fasta. [18:44:13] alignment.py (line 615): DEBUG: Relabeling 1659 (1659) with 1659 labels. [18:44:13] exhaustive.py (line 182): DEBUG: Merging alignment subset into placement subset for chunk 0: A_105_4. [18:44:13] alignment.py (line 727): DEBUG: Merging started ... [18:44:13] alignment.py (line 834): DEBUG: Merging finished ... [18:44:13] problem.py (line 246): DEBUG: Reading /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_105/A_105_5/hmmbuild.input.6k5tfe1q.fasta [] and relabeling it based on 1550 orig column labels. [18:44:13] alignment.py (line 543): DEBUG: Reading base alignment: /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_105/A_105_5/hmmbuild.input.6k5tfe1q.fasta. [18:44:13] alignment.py (line 615): DEBUG: Relabeling 1550 (1550) with 1550 labels. [18:44:13] exhaustive.py (line 182): DEBUG: Merging alignment subset into placement subset for chunk 0: A_105_5. [18:44:13] alignment.py (line 727): DEBUG: Merging started ... [18:44:13] alignment.py (line 834): DEBUG: Merging finished ... [18:44:13] problem.py (line 246): DEBUG: Reading /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_105/A_105_0/hmmbuild.input._eix_4kk.fasta [] and relabeling it based on 1517 orig column labels. [18:44:13] alignment.py (line 543): DEBUG: Reading base alignment: /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_105/A_105_0/hmmbuild.input._eix_4kk.fasta. [18:44:13] alignment.py (line 615): DEBUG: Relabeling 1517 (1517) with 1517 labels. [18:44:13] exhaustive.py (line 182): DEBUG: Merging alignment subset into placement subset for chunk 1: A_105_0. [18:44:13] alignment.py (line 727): DEBUG: Merging started ... [18:44:13] alignment.py (line 834): DEBUG: Merging finished ... [18:44:13] problem.py (line 246): DEBUG: Reading /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_105/A_105_1/hmmbuild.input.r78_1c4r.fasta [] and relabeling it based on 1521 orig column labels. [18:44:13] alignment.py (line 543): DEBUG: Reading base alignment: /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_105/A_105_1/hmmbuild.input.r78_1c4r.fasta. [18:44:13] alignment.py (line 615): DEBUG: Relabeling 1521 (1521) with 1521 labels. [18:44:13] exhaustive.py (line 182): DEBUG: Merging alignment subset into placement subset for chunk 1: A_105_1. [18:44:13] alignment.py (line 727): DEBUG: Merging started ... [18:44:13] alignment.py (line 834): DEBUG: Merging finished ... [18:44:13] problem.py (line 246): DEBUG: Reading /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_105/A_105_2/hmmbuild.input.mhcj0lw0.fasta [] and relabeling it based on 1511 orig column labels. [18:44:13] alignment.py (line 543): DEBUG: Reading base alignment: /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_105/A_105_2/hmmbuild.input.mhcj0lw0.fasta. [18:44:13] alignment.py (line 615): DEBUG: Relabeling 1511 (1511) with 1511 labels. [18:44:13] exhaustive.py (line 182): DEBUG: Merging alignment subset into placement subset for chunk 1: A_105_2. [18:44:13] alignment.py (line 727): DEBUG: Merging started ... [18:44:13] alignment.py (line 834): DEBUG: Merging finished ... [18:44:13] problem.py (line 246): DEBUG: Reading /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_105/A_105_3/hmmbuild.input._u669r8u.fasta [] and relabeling it based on 1624 orig column labels. [18:44:13] alignment.py (line 543): DEBUG: Reading base alignment: /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_105/A_105_3/hmmbuild.input._u669r8u.fasta. [18:44:13] alignment.py (line 615): DEBUG: Relabeling 1624 (1624) with 1624 labels. [18:44:13] exhaustive.py (line 182): DEBUG: Merging alignment subset into placement subset for chunk 1: A_105_3. [18:44:13] alignment.py (line 727): DEBUG: Merging started ... [18:44:13] alignment.py (line 834): DEBUG: Merging finished ... [18:44:13] problem.py (line 246): DEBUG: Reading /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_105/A_105_4/hmmbuild.input.93irua_g.fasta [] and relabeling it based on 1659 orig column labels. [18:44:13] alignment.py (line 543): DEBUG: Reading base alignment: /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_105/A_105_4/hmmbuild.input.93irua_g.fasta. [18:44:13] alignment.py (line 615): DEBUG: Relabeling 1659 (1659) with 1659 labels. [18:44:13] exhaustive.py (line 182): DEBUG: Merging alignment subset into placement subset for chunk 1: A_105_4. [18:44:13] alignment.py (line 727): DEBUG: Merging started ... [18:44:13] alignment.py (line 834): DEBUG: Merging finished ... [18:44:13] problem.py (line 246): DEBUG: Reading /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_105/A_105_5/hmmbuild.input.6k5tfe1q.fasta [] and relabeling it based on 1550 orig column labels. [18:44:13] alignment.py (line 543): DEBUG: Reading base alignment: /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_105/A_105_5/hmmbuild.input.6k5tfe1q.fasta. [18:44:13] alignment.py (line 615): DEBUG: Relabeling 1550 (1550) with 1550 labels. [18:44:13] exhaustive.py (line 182): DEBUG: Merging alignment subset into placement subset for chunk 1: A_105_5. [18:44:13] alignment.py (line 727): DEBUG: Merging started ... [18:44:13] alignment.py (line 834): DEBUG: Merging finished ... [18:44:13] problem.py (line 246): DEBUG: Reading /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_105/A_105_0/hmmbuild.input._eix_4kk.fasta [] and relabeling it based on 1517 orig column labels. [18:44:13] alignment.py (line 543): DEBUG: Reading base alignment: /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_105/A_105_0/hmmbuild.input._eix_4kk.fasta. [18:44:13] alignment.py (line 615): DEBUG: Relabeling 1517 (1517) with 1517 labels. [18:44:13] exhaustive.py (line 182): DEBUG: Merging alignment subset into placement subset for chunk 2: A_105_0. [18:44:13] alignment.py (line 727): DEBUG: Merging started ... [18:44:13] alignment.py (line 834): DEBUG: Merging finished ... [18:44:13] problem.py (line 246): DEBUG: Reading /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_105/A_105_1/hmmbuild.input.r78_1c4r.fasta [] and relabeling it based on 1521 orig column labels. [18:44:13] alignment.py (line 543): DEBUG: Reading base alignment: /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_105/A_105_1/hmmbuild.input.r78_1c4r.fasta. [18:44:13] alignment.py (line 615): DEBUG: Relabeling 1521 (1521) with 1521 labels. [18:44:13] exhaustive.py (line 182): DEBUG: Merging alignment subset into placement subset for chunk 2: A_105_1. [18:44:13] alignment.py (line 727): DEBUG: Merging started ... [18:44:13] alignment.py (line 834): DEBUG: Merging finished ... [18:44:13] problem.py (line 246): DEBUG: Reading /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_105/A_105_2/hmmbuild.input.mhcj0lw0.fasta [] and relabeling it based on 1511 orig column labels. [18:44:13] alignment.py (line 543): DEBUG: Reading base alignment: /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_105/A_105_2/hmmbuild.input.mhcj0lw0.fasta. [18:44:13] alignment.py (line 615): DEBUG: Relabeling 1511 (1511) with 1511 labels. [18:44:13] exhaustive.py (line 182): DEBUG: Merging alignment subset into placement subset for chunk 2: A_105_2. [18:44:13] alignment.py (line 727): DEBUG: Merging started ... [18:44:13] alignment.py (line 834): DEBUG: Merging finished ... [18:44:13] problem.py (line 246): DEBUG: Reading /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_105/A_105_3/hmmbuild.input._u669r8u.fasta [] and relabeling it based on 1624 orig column labels. [18:44:13] alignment.py (line 543): DEBUG: Reading base alignment: /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_105/A_105_3/hmmbuild.input._u669r8u.fasta. [18:44:13] alignment.py (line 615): DEBUG: Relabeling 1624 (1624) with 1624 labels. [18:44:13] exhaustive.py (line 182): DEBUG: Merging alignment subset into placement subset for chunk 2: A_105_3. [18:44:13] alignment.py (line 727): DEBUG: Merging started ... [18:44:13] alignment.py (line 834): DEBUG: Merging finished ... [18:44:13] problem.py (line 246): DEBUG: Reading /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_105/A_105_4/hmmbuild.input.93irua_g.fasta [] and relabeling it based on 1659 orig column labels. [18:44:13] alignment.py (line 543): DEBUG: Reading base alignment: /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_105/A_105_4/hmmbuild.input.93irua_g.fasta. [18:44:13] alignment.py (line 615): DEBUG: Relabeling 1659 (1659) with 1659 labels. [18:44:13] exhaustive.py (line 182): DEBUG: Merging alignment subset into placement subset for chunk 2: A_105_4. [18:44:13] alignment.py (line 727): DEBUG: Merging started ... [18:44:13] alignment.py (line 834): DEBUG: Merging finished ... [18:44:13] problem.py (line 246): DEBUG: Reading /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_105/A_105_5/hmmbuild.input.6k5tfe1q.fasta [] and relabeling it based on 1550 orig column labels. [18:44:13] alignment.py (line 543): DEBUG: Reading base alignment: /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_105/A_105_5/hmmbuild.input.6k5tfe1q.fasta. [18:44:13] alignment.py (line 615): DEBUG: Relabeling 1550 (1550) with 1550 labels. [18:44:13] exhaustive.py (line 182): DEBUG: Merging alignment subset into placement subset for chunk 2: A_105_5. [18:44:13] alignment.py (line 727): DEBUG: Merging started ... [18:44:13] alignment.py (line 834): DEBUG: Merging finished ... [18:44:13] problem.py (line 246): DEBUG: Reading /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_105/A_105_0/hmmbuild.input._eix_4kk.fasta [] and relabeling it based on 1517 orig column labels. [18:44:13] alignment.py (line 543): DEBUG: Reading base alignment: /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_105/A_105_0/hmmbuild.input._eix_4kk.fasta. [18:44:13] alignment.py (line 615): DEBUG: Relabeling 1517 (1517) with 1517 labels. [18:44:13] exhaustive.py (line 182): DEBUG: Merging alignment subset into placement subset for chunk 3: A_105_0. [18:44:13] alignment.py (line 727): DEBUG: Merging started ... [18:44:13] alignment.py (line 834): DEBUG: Merging finished ... [18:44:13] problem.py (line 246): DEBUG: Reading /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_105/A_105_1/hmmbuild.input.r78_1c4r.fasta [] and relabeling it based on 1521 orig column labels. [18:44:13] alignment.py (line 543): DEBUG: Reading base alignment: /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_105/A_105_1/hmmbuild.input.r78_1c4r.fasta. [18:44:13] alignment.py (line 615): DEBUG: Relabeling 1521 (1521) with 1521 labels. [18:44:13] exhaustive.py (line 182): DEBUG: Merging alignment subset into placement subset for chunk 3: A_105_1. [18:44:13] alignment.py (line 727): DEBUG: Merging started ... [18:44:13] alignment.py (line 834): DEBUG: Merging finished ... [18:44:13] problem.py (line 246): DEBUG: Reading /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_105/A_105_2/hmmbuild.input.mhcj0lw0.fasta [] and relabeling it based on 1511 orig column labels. [18:44:13] alignment.py (line 543): DEBUG: Reading base alignment: /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_105/A_105_2/hmmbuild.input.mhcj0lw0.fasta. [18:44:13] alignment.py (line 615): DEBUG: Relabeling 1511 (1511) with 1511 labels. [18:44:13] exhaustive.py (line 182): DEBUG: Merging alignment subset into placement subset for chunk 3: A_105_2. [18:44:13] alignment.py (line 727): DEBUG: Merging started ... [18:44:13] alignment.py (line 834): DEBUG: Merging finished ... [18:44:13] problem.py (line 246): DEBUG: Reading /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_105/A_105_3/hmmbuild.input._u669r8u.fasta [] and relabeling it based on 1624 orig column labels. [18:44:13] alignment.py (line 543): DEBUG: Reading base alignment: /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_105/A_105_3/hmmbuild.input._u669r8u.fasta. [18:44:13] alignment.py (line 615): DEBUG: Relabeling 1624 (1624) with 1624 labels. [18:44:13] exhaustive.py (line 182): DEBUG: Merging alignment subset into placement subset for chunk 3: A_105_3. [18:44:13] alignment.py (line 727): DEBUG: Merging started ... [18:44:13] alignment.py (line 834): DEBUG: Merging finished ... [18:44:13] problem.py (line 246): DEBUG: Reading /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_105/A_105_4/hmmbuild.input.93irua_g.fasta [] and relabeling it based on 1659 orig column labels. [18:44:13] alignment.py (line 543): DEBUG: Reading base alignment: /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_105/A_105_4/hmmbuild.input.93irua_g.fasta. [18:44:13] alignment.py (line 615): DEBUG: Relabeling 1659 (1659) with 1659 labels. [18:44:13] exhaustive.py (line 182): DEBUG: Merging alignment subset into placement subset for chunk 3: A_105_4. [18:44:13] alignment.py (line 727): DEBUG: Merging started ... [18:44:13] alignment.py (line 834): DEBUG: Merging finished ... [18:44:13] problem.py (line 246): DEBUG: Reading /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_105/A_105_5/hmmbuild.input.6k5tfe1q.fasta [] and relabeling it based on 1550 orig column labels. [18:44:13] alignment.py (line 543): DEBUG: Reading base alignment: /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_105/A_105_5/hmmbuild.input.6k5tfe1q.fasta. [18:44:13] alignment.py (line 615): DEBUG: Relabeling 1550 (1550) with 1550 labels. [18:44:13] exhaustive.py (line 182): DEBUG: Merging alignment subset into placement subset for chunk 3: A_105_5. [18:44:13] alignment.py (line 727): DEBUG: Merging started ... [18:44:13] alignment.py (line 834): DEBUG: Merging finished ... [18:44:13] problem.py (line 246): DEBUG: Reading /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_105/A_105_0/hmmbuild.input._eix_4kk.fasta [] and relabeling it based on 1517 orig column labels. [18:44:13] alignment.py (line 543): DEBUG: Reading base alignment: /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_105/A_105_0/hmmbuild.input._eix_4kk.fasta. [18:44:13] alignment.py (line 615): DEBUG: Relabeling 1517 (1517) with 1517 labels. [18:44:13] exhaustive.py (line 182): DEBUG: Merging alignment subset into placement subset for chunk 4: A_105_0. [18:44:13] alignment.py (line 727): DEBUG: Merging started ... [18:44:13] alignment.py (line 834): DEBUG: Merging finished ... [18:44:13] problem.py (line 246): DEBUG: Reading /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_105/A_105_1/hmmbuild.input.r78_1c4r.fasta [] and relabeling it based on 1521 orig column labels. [18:44:13] alignment.py (line 543): DEBUG: Reading base alignment: /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_105/A_105_1/hmmbuild.input.r78_1c4r.fasta. [18:44:13] alignment.py (line 615): DEBUG: Relabeling 1521 (1521) with 1521 labels. [18:44:13] exhaustive.py (line 182): DEBUG: Merging alignment subset into placement subset for chunk 4: A_105_1. [18:44:13] alignment.py (line 727): DEBUG: Merging started ... [18:44:13] alignment.py (line 834): DEBUG: Merging finished ... [18:44:13] problem.py (line 246): DEBUG: Reading /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_105/A_105_2/hmmbuild.input.mhcj0lw0.fasta [] and relabeling it based on 1511 orig column labels. [18:44:13] alignment.py (line 543): DEBUG: Reading base alignment: /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_105/A_105_2/hmmbuild.input.mhcj0lw0.fasta. [18:44:13] alignment.py (line 615): DEBUG: Relabeling 1511 (1511) with 1511 labels. [18:44:13] exhaustive.py (line 182): DEBUG: Merging alignment subset into placement subset for chunk 4: A_105_2. [18:44:13] alignment.py (line 727): DEBUG: Merging started ... [18:44:13] alignment.py (line 834): DEBUG: Merging finished ... [18:44:13] problem.py (line 246): DEBUG: Reading /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_105/A_105_3/hmmbuild.input._u669r8u.fasta [] and relabeling it based on 1624 orig column labels. [18:44:13] alignment.py (line 543): DEBUG: Reading base alignment: /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_105/A_105_3/hmmbuild.input._u669r8u.fasta. [18:44:13] alignment.py (line 615): DEBUG: Relabeling 1624 (1624) with 1624 labels. [18:44:13] exhaustive.py (line 182): DEBUG: Merging alignment subset into placement subset for chunk 4: A_105_3. [18:44:13] alignment.py (line 727): DEBUG: Merging started ... [18:44:13] alignment.py (line 834): DEBUG: Merging finished ... [18:44:13] problem.py (line 246): DEBUG: Reading /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_105/A_105_4/hmmbuild.input.93irua_g.fasta [] and relabeling it based on 1659 orig column labels. [18:44:13] alignment.py (line 543): DEBUG: Reading base alignment: /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_105/A_105_4/hmmbuild.input.93irua_g.fasta. [18:44:13] alignment.py (line 615): DEBUG: Relabeling 1659 (1659) with 1659 labels. [18:44:13] exhaustive.py (line 182): DEBUG: Merging alignment subset into placement subset for chunk 4: A_105_4. [18:44:13] alignment.py (line 727): DEBUG: Merging started ... [18:44:13] alignment.py (line 834): DEBUG: Merging finished ... [18:44:13] problem.py (line 246): DEBUG: Reading /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_105/A_105_5/hmmbuild.input.6k5tfe1q.fasta [] and relabeling it based on 1550 orig column labels. [18:44:13] alignment.py (line 543): DEBUG: Reading base alignment: /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_105/A_105_5/hmmbuild.input.6k5tfe1q.fasta. [18:44:13] alignment.py (line 615): DEBUG: Relabeling 1550 (1550) with 1550 labels. [18:44:13] exhaustive.py (line 182): DEBUG: Merging alignment subset into placement subset for chunk 4: A_105_5. [18:44:13] alignment.py (line 727): DEBUG: Merging started ... [18:44:13] alignment.py (line 834): DEBUG: Merging finished ... [18:44:13] problem.py (line 246): DEBUG: Reading /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_105/A_105_0/hmmbuild.input._eix_4kk.fasta [] and relabeling it based on 1517 orig column labels. [18:44:13] alignment.py (line 543): DEBUG: Reading base alignment: /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_105/A_105_0/hmmbuild.input._eix_4kk.fasta. [18:44:13] alignment.py (line 615): DEBUG: Relabeling 1517 (1517) with 1517 labels. [18:44:13] exhaustive.py (line 182): DEBUG: Merging alignment subset into placement subset for chunk 5: A_105_0. [18:44:13] alignment.py (line 727): DEBUG: Merging started ... [18:44:13] alignment.py (line 834): DEBUG: Merging finished ... [18:44:13] problem.py (line 246): DEBUG: Reading /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_105/A_105_1/hmmbuild.input.r78_1c4r.fasta [] and relabeling it based on 1521 orig column labels. [18:44:13] alignment.py (line 543): DEBUG: Reading base alignment: /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_105/A_105_1/hmmbuild.input.r78_1c4r.fasta. [18:44:13] alignment.py (line 615): DEBUG: Relabeling 1521 (1521) with 1521 labels. [18:44:13] exhaustive.py (line 182): DEBUG: Merging alignment subset into placement subset for chunk 5: A_105_1. [18:44:13] alignment.py (line 727): DEBUG: Merging started ... [18:44:13] alignment.py (line 834): DEBUG: Merging finished ... [18:44:13] problem.py (line 246): DEBUG: Reading /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_105/A_105_2/hmmbuild.input.mhcj0lw0.fasta [] and relabeling it based on 1511 orig column labels. [18:44:13] alignment.py (line 543): DEBUG: Reading base alignment: /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_105/A_105_2/hmmbuild.input.mhcj0lw0.fasta. [18:44:13] alignment.py (line 615): DEBUG: Relabeling 1511 (1511) with 1511 labels. [18:44:13] exhaustive.py (line 182): DEBUG: Merging alignment subset into placement subset for chunk 5: A_105_2. [18:44:13] alignment.py (line 727): DEBUG: Merging started ... [18:44:13] alignment.py (line 834): DEBUG: Merging finished ... [18:44:13] problem.py (line 246): DEBUG: Reading /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_105/A_105_3/hmmbuild.input._u669r8u.fasta [] and relabeling it based on 1624 orig column labels. [18:44:13] alignment.py (line 543): DEBUG: Reading base alignment: /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_105/A_105_3/hmmbuild.input._u669r8u.fasta. [18:44:13] alignment.py (line 615): DEBUG: Relabeling 1624 (1624) with 1624 labels. [18:44:13] exhaustive.py (line 182): DEBUG: Merging alignment subset into placement subset for chunk 5: A_105_3. [18:44:13] alignment.py (line 727): DEBUG: Merging started ... [18:44:13] alignment.py (line 834): DEBUG: Merging finished ... [18:44:13] problem.py (line 246): DEBUG: Reading /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_105/A_105_4/hmmbuild.input.93irua_g.fasta [] and relabeling it based on 1659 orig column labels. [18:44:13] alignment.py (line 543): DEBUG: Reading base alignment: /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_105/A_105_4/hmmbuild.input.93irua_g.fasta. [18:44:13] alignment.py (line 615): DEBUG: Relabeling 1659 (1659) with 1659 labels. [18:44:13] exhaustive.py (line 182): DEBUG: Merging alignment subset into placement subset for chunk 5: A_105_4. [18:44:13] alignment.py (line 727): DEBUG: Merging started ... [18:44:13] alignment.py (line 834): DEBUG: Merging finished ... [18:44:13] problem.py (line 246): DEBUG: Reading /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_105/A_105_5/hmmbuild.input.6k5tfe1q.fasta [] and relabeling it based on 1550 orig column labels. [18:44:13] alignment.py (line 543): DEBUG: Reading base alignment: /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_105/A_105_5/hmmbuild.input.6k5tfe1q.fasta. [18:44:13] alignment.py (line 615): DEBUG: Relabeling 1550 (1550) with 1550 labels. [18:44:13] exhaustive.py (line 182): DEBUG: Merging alignment subset into placement subset for chunk 5: A_105_5. [18:44:13] alignment.py (line 727): DEBUG: Merging started ... [18:44:13] alignment.py (line 834): DEBUG: Merging finished ... [18:44:13] problem.py (line 246): DEBUG: Reading /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_105/A_105_0/hmmbuild.input._eix_4kk.fasta [] and relabeling it based on 1517 orig column labels. [18:44:13] alignment.py (line 543): DEBUG: Reading base alignment: /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_105/A_105_0/hmmbuild.input._eix_4kk.fasta. [18:44:13] alignment.py (line 615): DEBUG: Relabeling 1517 (1517) with 1517 labels. [18:44:13] exhaustive.py (line 182): DEBUG: Merging alignment subset into placement subset for chunk 6: A_105_0. [18:44:13] alignment.py (line 727): DEBUG: Merging started ... [18:44:13] alignment.py (line 834): DEBUG: Merging finished ... [18:44:13] problem.py (line 246): DEBUG: Reading /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_105/A_105_1/hmmbuild.input.r78_1c4r.fasta [] and relabeling it based on 1521 orig column labels. [18:44:13] alignment.py (line 543): DEBUG: Reading base alignment: /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_105/A_105_1/hmmbuild.input.r78_1c4r.fasta. [18:44:13] alignment.py (line 615): DEBUG: Relabeling 1521 (1521) with 1521 labels. [18:44:13] exhaustive.py (line 182): DEBUG: Merging alignment subset into placement subset for chunk 6: A_105_1. [18:44:13] alignment.py (line 727): DEBUG: Merging started ... [18:44:13] alignment.py (line 834): DEBUG: Merging finished ... [18:44:13] problem.py (line 246): DEBUG: Reading /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_105/A_105_2/hmmbuild.input.mhcj0lw0.fasta [] and relabeling it based on 1511 orig column labels. [18:44:13] alignment.py (line 543): DEBUG: Reading base alignment: /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_105/A_105_2/hmmbuild.input.mhcj0lw0.fasta. [18:44:13] alignment.py (line 615): DEBUG: Relabeling 1511 (1511) with 1511 labels. [18:44:13] exhaustive.py (line 182): DEBUG: Merging alignment subset into placement subset for chunk 6: A_105_2. [18:44:13] alignment.py (line 727): DEBUG: Merging started ... [18:44:13] alignment.py (line 834): DEBUG: Merging finished ... [18:44:13] problem.py (line 246): DEBUG: Reading /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_105/A_105_3/hmmbuild.input._u669r8u.fasta [] and relabeling it based on 1624 orig column labels. [18:44:13] alignment.py (line 543): DEBUG: Reading base alignment: /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_105/A_105_3/hmmbuild.input._u669r8u.fasta. [18:44:13] alignment.py (line 615): DEBUG: Relabeling 1624 (1624) with 1624 labels. [18:44:13] exhaustive.py (line 182): DEBUG: Merging alignment subset into placement subset for chunk 6: A_105_3. [18:44:13] alignment.py (line 727): DEBUG: Merging started ... [18:44:13] alignment.py (line 834): DEBUG: Merging finished ... [18:44:13] problem.py (line 246): DEBUG: Reading /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_105/A_105_4/hmmbuild.input.93irua_g.fasta [] and relabeling it based on 1659 orig column labels. [18:44:13] alignment.py (line 543): DEBUG: Reading base alignment: /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_105/A_105_4/hmmbuild.input.93irua_g.fasta. [18:44:13] alignment.py (line 615): DEBUG: Relabeling 1659 (1659) with 1659 labels. [18:44:13] exhaustive.py (line 182): DEBUG: Merging alignment subset into placement subset for chunk 6: A_105_4. [18:44:13] alignment.py (line 727): DEBUG: Merging started ... [18:44:13] alignment.py (line 834): DEBUG: Merging finished ... [18:44:13] problem.py (line 246): DEBUG: Reading /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_105/A_105_5/hmmbuild.input.6k5tfe1q.fasta [] and relabeling it based on 1550 orig column labels. [18:44:13] alignment.py (line 543): DEBUG: Reading base alignment: /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_105/A_105_5/hmmbuild.input.6k5tfe1q.fasta. [18:44:13] alignment.py (line 615): DEBUG: Relabeling 1550 (1550) with 1550 labels. [18:44:13] exhaustive.py (line 182): DEBUG: Merging alignment subset into placement subset for chunk 6: A_105_5. [18:44:13] alignment.py (line 727): DEBUG: Merging started ... [18:44:13] alignment.py (line 834): DEBUG: Merging finished ... [18:44:13] problem.py (line 246): DEBUG: Reading /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_105/A_105_0/hmmbuild.input._eix_4kk.fasta [] and relabeling it based on 1517 orig column labels. [18:44:13] alignment.py (line 543): DEBUG: Reading base alignment: /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_105/A_105_0/hmmbuild.input._eix_4kk.fasta. [18:44:13] alignment.py (line 615): DEBUG: Relabeling 1517 (1517) with 1517 labels. [18:44:13] exhaustive.py (line 182): DEBUG: Merging alignment subset into placement subset for chunk 7: A_105_0. [18:44:13] alignment.py (line 727): DEBUG: Merging started ... [18:44:13] alignment.py (line 834): DEBUG: Merging finished ... [18:44:13] problem.py (line 246): DEBUG: Reading /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_105/A_105_1/hmmbuild.input.r78_1c4r.fasta [] and relabeling it based on 1521 orig column labels. [18:44:13] alignment.py (line 543): DEBUG: Reading base alignment: /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_105/A_105_1/hmmbuild.input.r78_1c4r.fasta. [18:44:13] alignment.py (line 615): DEBUG: Relabeling 1521 (1521) with 1521 labels. [18:44:13] exhaustive.py (line 182): DEBUG: Merging alignment subset into placement subset for chunk 7: A_105_1. [18:44:13] alignment.py (line 727): DEBUG: Merging started ... [18:44:13] alignment.py (line 834): DEBUG: Merging finished ... [18:44:13] problem.py (line 246): DEBUG: Reading /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_105/A_105_2/hmmbuild.input.mhcj0lw0.fasta [] and relabeling it based on 1511 orig column labels. [18:44:13] alignment.py (line 543): DEBUG: Reading base alignment: /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_105/A_105_2/hmmbuild.input.mhcj0lw0.fasta. [18:44:13] alignment.py (line 615): DEBUG: Relabeling 1511 (1511) with 1511 labels. [18:44:13] exhaustive.py (line 182): DEBUG: Merging alignment subset into placement subset for chunk 7: A_105_2. [18:44:13] alignment.py (line 727): DEBUG: Merging started ... [18:44:13] alignment.py (line 834): DEBUG: Merging finished ... [18:44:13] problem.py (line 246): DEBUG: Reading /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_105/A_105_3/hmmbuild.input._u669r8u.fasta [] and relabeling it based on 1624 orig column labels. [18:44:13] alignment.py (line 543): DEBUG: Reading base alignment: /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_105/A_105_3/hmmbuild.input._u669r8u.fasta. [18:44:13] alignment.py (line 615): DEBUG: Relabeling 1624 (1624) with 1624 labels. [18:44:13] exhaustive.py (line 182): DEBUG: Merging alignment subset into placement subset for chunk 7: A_105_3. [18:44:13] alignment.py (line 727): DEBUG: Merging started ... [18:44:13] alignment.py (line 834): DEBUG: Merging finished ... [18:44:13] problem.py (line 246): DEBUG: Reading /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_105/A_105_4/hmmbuild.input.93irua_g.fasta [] and relabeling it based on 1659 orig column labels. [18:44:13] alignment.py (line 543): DEBUG: Reading base alignment: /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_105/A_105_4/hmmbuild.input.93irua_g.fasta. [18:44:13] alignment.py (line 615): DEBUG: Relabeling 1659 (1659) with 1659 labels. [18:44:13] exhaustive.py (line 182): DEBUG: Merging alignment subset into placement subset for chunk 7: A_105_4. [18:44:13] alignment.py (line 727): DEBUG: Merging started ... [18:44:13] alignment.py (line 834): DEBUG: Merging finished ... [18:44:13] problem.py (line 246): DEBUG: Reading /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_105/A_105_5/hmmbuild.input.6k5tfe1q.fasta [] and relabeling it based on 1550 orig column labels. [18:44:13] alignment.py (line 543): DEBUG: Reading base alignment: /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_105/A_105_5/hmmbuild.input.6k5tfe1q.fasta. [18:44:13] alignment.py (line 615): DEBUG: Relabeling 1550 (1550) with 1550 labels. [18:44:13] exhaustive.py (line 182): DEBUG: Merging alignment subset into placement subset for chunk 7: A_105_5. [18:44:13] alignment.py (line 727): DEBUG: Merging started ... [18:44:13] alignment.py (line 834): DEBUG: Merging finished ... [18:44:13] alignment.py (line 203): DEBUG: Writing alignment of type with length 0 to file /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_105/pplacer.extended.0.scc1okrc.fasta [18:44:13] alignment.py (line 203): DEBUG: Writing alignment of type with length 3414 to file /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_105/pplacer.backbone.o0z8hc2g.fasta [18:44:13] alignment.py (line 203): DEBUG: Writing alignment of type with length 0 to file /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_105/pplacer.extended.1.lhnd7983.fasta [18:44:13] alignment.py (line 203): DEBUG: Writing alignment of type with length 3414 to file /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_105/pplacer.backbone.sg2yfmh_.fasta [18:44:13] alignment.py (line 203): DEBUG: Writing alignment of type with length 0 to file /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_105/pplacer.extended.2.051b_9c8.fasta [18:44:13] alignment.py (line 203): DEBUG: Writing alignment of type with length 3414 to file /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_105/pplacer.backbone.405qu7qy.fasta [18:44:13] alignment.py (line 203): DEBUG: Writing alignment of type with length 0 to file /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_105/pplacer.extended.3.k8oujdc1.fasta [18:44:13] alignment.py (line 203): DEBUG: Writing alignment of type with length 3414 to file /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_105/pplacer.backbone.vs51gudz.fasta [18:44:13] alignment.py (line 203): DEBUG: Writing alignment of type with length 0 to file /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_105/pplacer.extended.4.rj66g6ma.fasta [18:44:13] alignment.py (line 203): DEBUG: Writing alignment of type with length 3414 to file /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_105/pplacer.backbone.vpjs_8pw.fasta [18:44:13] alignment.py (line 203): DEBUG: Writing alignment of type with length 0 to file /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_105/pplacer.extended.5.edftzic5.fasta [18:44:13] alignment.py (line 203): DEBUG: Writing alignment of type with length 3414 to file /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_105/pplacer.backbone.ru9xzs01.fasta [18:44:13] alignment.py (line 203): DEBUG: Writing alignment of type with length 0 to file /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_105/pplacer.extended.6.qztwlxyt.fasta [18:44:13] alignment.py (line 203): DEBUG: Writing alignment of type with length 3414 to file /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_105/pplacer.backbone._bg6bwbk.fasta [18:44:13] alignment.py (line 203): DEBUG: Writing alignment of type with length 0 to file /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_105/pplacer.extended.7._spd9kc9.fasta [18:44:13] alignment.py (line 203): DEBUG: Writing alignment of type with length 3414 to file /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_105/pplacer.backbone.z5iaaww1.fasta [18:44:13] exhaustive.py (line 151): INFO: Merging sub-alignments for placement problem : P_107. [18:44:13] problem.py (line 246): DEBUG: Reading /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_107/A_107_0/hmmbuild.input.qb938p1o.fasta [] and relabeling it based on 1686 orig column labels. [18:44:13] alignment.py (line 543): DEBUG: Reading base alignment: /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_107/A_107_0/hmmbuild.input.qb938p1o.fasta. [18:44:13] alignment.py (line 615): DEBUG: Relabeling 1686 (1686) with 1686 labels. [18:44:13] exhaustive.py (line 182): DEBUG: Merging alignment subset into placement subset for chunk 0: A_107_0. [18:44:13] alignment.py (line 727): DEBUG: Merging started ... [18:44:13] alignment.py (line 834): DEBUG: Merging finished ... [18:44:13] problem.py (line 246): DEBUG: Reading /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_107/A_107_1/hmmbuild.input.6tgmokh8.fasta [] and relabeling it based on 1636 orig column labels. [18:44:13] alignment.py (line 543): DEBUG: Reading base alignment: /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_107/A_107_1/hmmbuild.input.6tgmokh8.fasta. [18:44:13] alignment.py (line 615): DEBUG: Relabeling 1636 (1636) with 1636 labels. [18:44:13] exhaustive.py (line 182): DEBUG: Merging alignment subset into placement subset for chunk 0: A_107_1. [18:44:13] alignment.py (line 727): DEBUG: Merging started ... [18:44:13] alignment.py (line 834): DEBUG: Merging finished ... [18:44:13] problem.py (line 246): DEBUG: Reading /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_107/A_107_2/hmmbuild.input._4ihj3dm.fasta [] and relabeling it based on 2227 orig column labels. [18:44:13] alignment.py (line 543): DEBUG: Reading base alignment: /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_107/A_107_2/hmmbuild.input._4ihj3dm.fasta. [18:44:13] alignment.py (line 615): DEBUG: Relabeling 2227 (2227) with 2227 labels. [18:44:13] exhaustive.py (line 182): DEBUG: Merging alignment subset into placement subset for chunk 0: A_107_2. [18:44:13] alignment.py (line 727): DEBUG: Merging started ... [18:44:13] alignment.py (line 834): DEBUG: Merging finished ... [18:44:13] problem.py (line 246): DEBUG: Reading /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_107/A_107_3/hmmbuild.input.dezs_9ok.fasta [] and relabeling it based on 1760 orig column labels. [18:44:13] alignment.py (line 543): DEBUG: Reading base alignment: /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_107/A_107_3/hmmbuild.input.dezs_9ok.fasta. [18:44:13] alignment.py (line 615): DEBUG: Relabeling 1760 (1760) with 1760 labels. [18:44:13] exhaustive.py (line 182): DEBUG: Merging alignment subset into placement subset for chunk 0: A_107_3. [18:44:13] alignment.py (line 727): DEBUG: Merging started ... [18:44:13] alignment.py (line 834): DEBUG: Merging finished ... [18:44:13] problem.py (line 246): DEBUG: Reading /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_107/A_107_0/hmmbuild.input.qb938p1o.fasta [] and relabeling it based on 1686 orig column labels. [18:44:13] alignment.py (line 543): DEBUG: Reading base alignment: /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_107/A_107_0/hmmbuild.input.qb938p1o.fasta. [18:44:13] alignment.py (line 615): DEBUG: Relabeling 1686 (1686) with 1686 labels. [18:44:13] exhaustive.py (line 182): DEBUG: Merging alignment subset into placement subset for chunk 1: A_107_0. [18:44:13] alignment.py (line 727): DEBUG: Merging started ... [18:44:13] alignment.py (line 834): DEBUG: Merging finished ... [18:44:13] problem.py (line 246): DEBUG: Reading /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_107/A_107_1/hmmbuild.input.6tgmokh8.fasta [] and relabeling it based on 1636 orig column labels. [18:44:13] alignment.py (line 543): DEBUG: Reading base alignment: /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_107/A_107_1/hmmbuild.input.6tgmokh8.fasta. [18:44:13] alignment.py (line 615): DEBUG: Relabeling 1636 (1636) with 1636 labels. [18:44:13] exhaustive.py (line 182): DEBUG: Merging alignment subset into placement subset for chunk 1: A_107_1. [18:44:13] alignment.py (line 727): DEBUG: Merging started ... [18:44:13] alignment.py (line 834): DEBUG: Merging finished ... [18:44:13] problem.py (line 246): DEBUG: Reading /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_107/A_107_2/hmmbuild.input._4ihj3dm.fasta [] and relabeling it based on 2227 orig column labels. [18:44:13] alignment.py (line 543): DEBUG: Reading base alignment: /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_107/A_107_2/hmmbuild.input._4ihj3dm.fasta. [18:44:13] alignment.py (line 615): DEBUG: Relabeling 2227 (2227) with 2227 labels. [18:44:13] exhaustive.py (line 182): DEBUG: Merging alignment subset into placement subset for chunk 1: A_107_2. [18:44:13] alignment.py (line 727): DEBUG: Merging started ... [18:44:14] alignment.py (line 834): DEBUG: Merging finished ... [18:44:14] problem.py (line 246): DEBUG: Reading /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_107/A_107_3/hmmbuild.input.dezs_9ok.fasta [] and relabeling it based on 1760 orig column labels. [18:44:14] alignment.py (line 543): DEBUG: Reading base alignment: /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_107/A_107_3/hmmbuild.input.dezs_9ok.fasta. [18:44:14] alignment.py (line 615): DEBUG: Relabeling 1760 (1760) with 1760 labels. [18:44:14] exhaustive.py (line 182): DEBUG: Merging alignment subset into placement subset for chunk 1: A_107_3. [18:44:14] alignment.py (line 727): DEBUG: Merging started ... [18:44:14] alignment.py (line 834): DEBUG: Merging finished ... [18:44:14] problem.py (line 246): DEBUG: Reading /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_107/A_107_0/hmmbuild.input.qb938p1o.fasta [] and relabeling it based on 1686 orig column labels. [18:44:14] alignment.py (line 543): DEBUG: Reading base alignment: /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_107/A_107_0/hmmbuild.input.qb938p1o.fasta. [18:44:14] alignment.py (line 615): DEBUG: Relabeling 1686 (1686) with 1686 labels. [18:44:14] exhaustive.py (line 182): DEBUG: Merging alignment subset into placement subset for chunk 2: A_107_0. [18:44:14] alignment.py (line 727): DEBUG: Merging started ... [18:44:14] alignment.py (line 834): DEBUG: Merging finished ... [18:44:14] problem.py (line 246): DEBUG: Reading /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_107/A_107_1/hmmbuild.input.6tgmokh8.fasta [] and relabeling it based on 1636 orig column labels. [18:44:14] alignment.py (line 543): DEBUG: Reading base alignment: /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_107/A_107_1/hmmbuild.input.6tgmokh8.fasta. [18:44:14] alignment.py (line 615): DEBUG: Relabeling 1636 (1636) with 1636 labels. [18:44:14] exhaustive.py (line 182): DEBUG: Merging alignment subset into placement subset for chunk 2: A_107_1. [18:44:14] alignment.py (line 727): DEBUG: Merging started ... [18:44:14] alignment.py (line 834): DEBUG: Merging finished ... [18:44:14] problem.py (line 246): DEBUG: Reading /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_107/A_107_2/hmmbuild.input._4ihj3dm.fasta [] and relabeling it based on 2227 orig column labels. [18:44:14] alignment.py (line 543): DEBUG: Reading base alignment: /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_107/A_107_2/hmmbuild.input._4ihj3dm.fasta. [18:44:14] alignment.py (line 615): DEBUG: Relabeling 2227 (2227) with 2227 labels. [18:44:14] exhaustive.py (line 182): DEBUG: Merging alignment subset into placement subset for chunk 2: A_107_2. [18:44:14] alignment.py (line 727): DEBUG: Merging started ... [18:44:14] alignment.py (line 834): DEBUG: Merging finished ... [18:44:14] problem.py (line 246): DEBUG: Reading /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_107/A_107_3/hmmbuild.input.dezs_9ok.fasta [] and relabeling it based on 1760 orig column labels. [18:44:14] alignment.py (line 543): DEBUG: Reading base alignment: /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_107/A_107_3/hmmbuild.input.dezs_9ok.fasta. [18:44:14] alignment.py (line 615): DEBUG: Relabeling 1760 (1760) with 1760 labels. [18:44:14] exhaustive.py (line 182): DEBUG: Merging alignment subset into placement subset for chunk 2: A_107_3. [18:44:14] alignment.py (line 727): DEBUG: Merging started ... [18:44:14] alignment.py (line 834): DEBUG: Merging finished ... [18:44:14] problem.py (line 246): DEBUG: Reading /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_107/A_107_0/hmmbuild.input.qb938p1o.fasta [] and relabeling it based on 1686 orig column labels. [18:44:14] alignment.py (line 543): DEBUG: Reading base alignment: /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_107/A_107_0/hmmbuild.input.qb938p1o.fasta. [18:44:14] alignment.py (line 615): DEBUG: Relabeling 1686 (1686) with 1686 labels. [18:44:14] exhaustive.py (line 182): DEBUG: Merging alignment subset into placement subset for chunk 3: A_107_0. [18:44:14] alignment.py (line 727): DEBUG: Merging started ... [18:44:14] alignment.py (line 834): DEBUG: Merging finished ... [18:44:14] problem.py (line 246): DEBUG: Reading /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_107/A_107_1/hmmbuild.input.6tgmokh8.fasta [] and relabeling it based on 1636 orig column labels. [18:44:14] alignment.py (line 543): DEBUG: Reading base alignment: /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_107/A_107_1/hmmbuild.input.6tgmokh8.fasta. [18:44:14] alignment.py (line 615): DEBUG: Relabeling 1636 (1636) with 1636 labels. [18:44:14] exhaustive.py (line 182): DEBUG: Merging alignment subset into placement subset for chunk 3: A_107_1. [18:44:14] alignment.py (line 727): DEBUG: Merging started ... [18:44:14] alignment.py (line 834): DEBUG: Merging finished ... [18:44:14] problem.py (line 246): DEBUG: Reading /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_107/A_107_2/hmmbuild.input._4ihj3dm.fasta [] and relabeling it based on 2227 orig column labels. [18:44:14] alignment.py (line 543): DEBUG: Reading base alignment: /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_107/A_107_2/hmmbuild.input._4ihj3dm.fasta. [18:44:14] alignment.py (line 615): DEBUG: Relabeling 2227 (2227) with 2227 labels. [18:44:14] exhaustive.py (line 182): DEBUG: Merging alignment subset into placement subset for chunk 3: A_107_2. [18:44:14] alignment.py (line 727): DEBUG: Merging started ... [18:44:14] alignment.py (line 834): DEBUG: Merging finished ... [18:44:14] problem.py (line 246): DEBUG: Reading /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_107/A_107_3/hmmbuild.input.dezs_9ok.fasta [] and relabeling it based on 1760 orig column labels. [18:44:14] alignment.py (line 543): DEBUG: Reading base alignment: /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_107/A_107_3/hmmbuild.input.dezs_9ok.fasta. [18:44:14] alignment.py (line 615): DEBUG: Relabeling 1760 (1760) with 1760 labels. [18:44:14] exhaustive.py (line 182): DEBUG: Merging alignment subset into placement subset for chunk 3: A_107_3. [18:44:14] alignment.py (line 727): DEBUG: Merging started ... [18:44:14] alignment.py (line 834): DEBUG: Merging finished ... [18:44:14] problem.py (line 246): DEBUG: Reading /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_107/A_107_0/hmmbuild.input.qb938p1o.fasta [] and relabeling it based on 1686 orig column labels. [18:44:14] alignment.py (line 543): DEBUG: Reading base alignment: /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_107/A_107_0/hmmbuild.input.qb938p1o.fasta. [18:44:14] alignment.py (line 615): DEBUG: Relabeling 1686 (1686) with 1686 labels. [18:44:14] exhaustive.py (line 182): DEBUG: Merging alignment subset into placement subset for chunk 4: A_107_0. [18:44:14] alignment.py (line 727): DEBUG: Merging started ... [18:44:14] alignment.py (line 834): DEBUG: Merging finished ... [18:44:14] problem.py (line 246): DEBUG: Reading /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_107/A_107_1/hmmbuild.input.6tgmokh8.fasta [] and relabeling it based on 1636 orig column labels. [18:44:14] alignment.py (line 543): DEBUG: Reading base alignment: /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_107/A_107_1/hmmbuild.input.6tgmokh8.fasta. [18:44:14] alignment.py (line 615): DEBUG: Relabeling 1636 (1636) with 1636 labels. [18:44:14] exhaustive.py (line 182): DEBUG: Merging alignment subset into placement subset for chunk 4: A_107_1. [18:44:14] alignment.py (line 727): DEBUG: Merging started ... [18:44:14] alignment.py (line 834): DEBUG: Merging finished ... [18:44:14] problem.py (line 246): DEBUG: Reading /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_107/A_107_2/hmmbuild.input._4ihj3dm.fasta [] and relabeling it based on 2227 orig column labels. [18:44:14] alignment.py (line 543): DEBUG: Reading base alignment: /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_107/A_107_2/hmmbuild.input._4ihj3dm.fasta. [18:44:14] alignment.py (line 615): DEBUG: Relabeling 2227 (2227) with 2227 labels. [18:44:14] exhaustive.py (line 182): DEBUG: Merging alignment subset into placement subset for chunk 4: A_107_2. [18:44:14] alignment.py (line 727): DEBUG: Merging started ... [18:44:14] alignment.py (line 834): DEBUG: Merging finished ... [18:44:14] problem.py (line 246): DEBUG: Reading /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_107/A_107_3/hmmbuild.input.dezs_9ok.fasta [] and relabeling it based on 1760 orig column labels. [18:44:14] alignment.py (line 543): DEBUG: Reading base alignment: /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_107/A_107_3/hmmbuild.input.dezs_9ok.fasta. [18:44:14] alignment.py (line 615): DEBUG: Relabeling 1760 (1760) with 1760 labels. [18:44:14] exhaustive.py (line 182): DEBUG: Merging alignment subset into placement subset for chunk 4: A_107_3. [18:44:14] alignment.py (line 727): DEBUG: Merging started ... [18:44:14] alignment.py (line 834): DEBUG: Merging finished ... [18:44:14] problem.py (line 246): DEBUG: Reading /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_107/A_107_0/hmmbuild.input.qb938p1o.fasta [] and relabeling it based on 1686 orig column labels. [18:44:14] alignment.py (line 543): DEBUG: Reading base alignment: /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_107/A_107_0/hmmbuild.input.qb938p1o.fasta. [18:44:14] alignment.py (line 615): DEBUG: Relabeling 1686 (1686) with 1686 labels. [18:44:14] exhaustive.py (line 182): DEBUG: Merging alignment subset into placement subset for chunk 5: A_107_0. [18:44:14] alignment.py (line 727): DEBUG: Merging started ... [18:44:14] alignment.py (line 834): DEBUG: Merging finished ... [18:44:14] problem.py (line 246): DEBUG: Reading /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_107/A_107_1/hmmbuild.input.6tgmokh8.fasta [] and relabeling it based on 1636 orig column labels. [18:44:14] alignment.py (line 543): DEBUG: Reading base alignment: /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_107/A_107_1/hmmbuild.input.6tgmokh8.fasta. [18:44:14] alignment.py (line 615): DEBUG: Relabeling 1636 (1636) with 1636 labels. [18:44:14] exhaustive.py (line 182): DEBUG: Merging alignment subset into placement subset for chunk 5: A_107_1. [18:44:14] alignment.py (line 727): DEBUG: Merging started ... [18:44:14] alignment.py (line 834): DEBUG: Merging finished ... [18:44:14] problem.py (line 246): DEBUG: Reading /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_107/A_107_2/hmmbuild.input._4ihj3dm.fasta [] and relabeling it based on 2227 orig column labels. [18:44:14] alignment.py (line 543): DEBUG: Reading base alignment: /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_107/A_107_2/hmmbuild.input._4ihj3dm.fasta. [18:44:14] alignment.py (line 615): DEBUG: Relabeling 2227 (2227) with 2227 labels. [18:44:14] exhaustive.py (line 182): DEBUG: Merging alignment subset into placement subset for chunk 5: A_107_2. [18:44:14] alignment.py (line 727): DEBUG: Merging started ... [18:44:14] alignment.py (line 834): DEBUG: Merging finished ... [18:44:14] problem.py (line 246): DEBUG: Reading /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_107/A_107_3/hmmbuild.input.dezs_9ok.fasta [] and relabeling it based on 1760 orig column labels. [18:44:14] alignment.py (line 543): DEBUG: Reading base alignment: /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_107/A_107_3/hmmbuild.input.dezs_9ok.fasta. [18:44:14] alignment.py (line 615): DEBUG: Relabeling 1760 (1760) with 1760 labels. [18:44:14] exhaustive.py (line 182): DEBUG: Merging alignment subset into placement subset for chunk 5: A_107_3. [18:44:14] alignment.py (line 727): DEBUG: Merging started ... [18:44:14] alignment.py (line 834): DEBUG: Merging finished ... [18:44:14] problem.py (line 246): DEBUG: Reading /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_107/A_107_0/hmmbuild.input.qb938p1o.fasta [] and relabeling it based on 1686 orig column labels. [18:44:14] alignment.py (line 543): DEBUG: Reading base alignment: /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_107/A_107_0/hmmbuild.input.qb938p1o.fasta. [18:44:14] alignment.py (line 615): DEBUG: Relabeling 1686 (1686) with 1686 labels. [18:44:14] exhaustive.py (line 182): DEBUG: Merging alignment subset into placement subset for chunk 6: A_107_0. [18:44:14] alignment.py (line 727): DEBUG: Merging started ... [18:44:14] alignment.py (line 834): DEBUG: Merging finished ... [18:44:14] problem.py (line 246): DEBUG: Reading /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_107/A_107_1/hmmbuild.input.6tgmokh8.fasta [] and relabeling it based on 1636 orig column labels. [18:44:14] alignment.py (line 543): DEBUG: Reading base alignment: /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_107/A_107_1/hmmbuild.input.6tgmokh8.fasta. [18:44:14] alignment.py (line 615): DEBUG: Relabeling 1636 (1636) with 1636 labels. [18:44:14] exhaustive.py (line 182): DEBUG: Merging alignment subset into placement subset for chunk 6: A_107_1. [18:44:14] alignment.py (line 727): DEBUG: Merging started ... [18:44:14] alignment.py (line 834): DEBUG: Merging finished ... [18:44:14] problem.py (line 246): DEBUG: Reading /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_107/A_107_2/hmmbuild.input._4ihj3dm.fasta [] and relabeling it based on 2227 orig column labels. [18:44:14] alignment.py (line 543): DEBUG: Reading base alignment: /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_107/A_107_2/hmmbuild.input._4ihj3dm.fasta. [18:44:14] alignment.py (line 615): DEBUG: Relabeling 2227 (2227) with 2227 labels. [18:44:14] exhaustive.py (line 182): DEBUG: Merging alignment subset into placement subset for chunk 6: A_107_2. [18:44:14] alignment.py (line 727): DEBUG: Merging started ... [18:44:14] alignment.py (line 834): DEBUG: Merging finished ... [18:44:14] problem.py (line 246): DEBUG: Reading /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_107/A_107_3/hmmbuild.input.dezs_9ok.fasta [] and relabeling it based on 1760 orig column labels. [18:44:14] alignment.py (line 543): DEBUG: Reading base alignment: /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_107/A_107_3/hmmbuild.input.dezs_9ok.fasta. [18:44:14] alignment.py (line 615): DEBUG: Relabeling 1760 (1760) with 1760 labels. [18:44:14] exhaustive.py (line 182): DEBUG: Merging alignment subset into placement subset for chunk 6: A_107_3. [18:44:14] alignment.py (line 727): DEBUG: Merging started ... [18:44:14] alignment.py (line 834): DEBUG: Merging finished ... [18:44:14] problem.py (line 246): DEBUG: Reading /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_107/A_107_0/hmmbuild.input.qb938p1o.fasta [] and relabeling it based on 1686 orig column labels. [18:44:14] alignment.py (line 543): DEBUG: Reading base alignment: /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_107/A_107_0/hmmbuild.input.qb938p1o.fasta. [18:44:14] alignment.py (line 615): DEBUG: Relabeling 1686 (1686) with 1686 labels. [18:44:14] exhaustive.py (line 182): DEBUG: Merging alignment subset into placement subset for chunk 7: A_107_0. [18:44:14] alignment.py (line 727): DEBUG: Merging started ... [18:44:14] alignment.py (line 834): DEBUG: Merging finished ... [18:44:14] problem.py (line 246): DEBUG: Reading /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_107/A_107_1/hmmbuild.input.6tgmokh8.fasta [] and relabeling it based on 1636 orig column labels. [18:44:14] alignment.py (line 543): DEBUG: Reading base alignment: /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_107/A_107_1/hmmbuild.input.6tgmokh8.fasta. [18:44:14] alignment.py (line 615): DEBUG: Relabeling 1636 (1636) with 1636 labels. [18:44:14] exhaustive.py (line 182): DEBUG: Merging alignment subset into placement subset for chunk 7: A_107_1. [18:44:14] alignment.py (line 727): DEBUG: Merging started ... [18:44:14] alignment.py (line 834): DEBUG: Merging finished ... [18:44:14] problem.py (line 246): DEBUG: Reading /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_107/A_107_2/hmmbuild.input._4ihj3dm.fasta [] and relabeling it based on 2227 orig column labels. [18:44:14] alignment.py (line 543): DEBUG: Reading base alignment: /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_107/A_107_2/hmmbuild.input._4ihj3dm.fasta. [18:44:14] alignment.py (line 615): DEBUG: Relabeling 2227 (2227) with 2227 labels. [18:44:14] exhaustive.py (line 182): DEBUG: Merging alignment subset into placement subset for chunk 7: A_107_2. [18:44:14] alignment.py (line 727): DEBUG: Merging started ... [18:44:14] alignment.py (line 834): DEBUG: Merging finished ... [18:44:14] problem.py (line 246): DEBUG: Reading /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_107/A_107_3/hmmbuild.input.dezs_9ok.fasta [] and relabeling it based on 1760 orig column labels. [18:44:14] alignment.py (line 543): DEBUG: Reading base alignment: /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_107/A_107_3/hmmbuild.input.dezs_9ok.fasta. [18:44:14] alignment.py (line 615): DEBUG: Relabeling 1760 (1760) with 1760 labels. [18:44:14] exhaustive.py (line 182): DEBUG: Merging alignment subset into placement subset for chunk 7: A_107_3. [18:44:14] alignment.py (line 727): DEBUG: Merging started ... [18:44:14] alignment.py (line 834): DEBUG: Merging finished ... [18:44:14] alignment.py (line 203): DEBUG: Writing alignment of type with length 0 to file /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_107/pplacer.extended.0.n61xc82y.fasta [18:44:14] alignment.py (line 203): DEBUG: Writing alignment of type with length 3128 to file /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_107/pplacer.backbone.cu2mdh54.fasta [18:44:14] alignment.py (line 203): DEBUG: Writing alignment of type with length 0 to file /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_107/pplacer.extended.1.czicjxam.fasta [18:44:14] alignment.py (line 203): DEBUG: Writing alignment of type with length 3128 to file /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_107/pplacer.backbone.8jb2xgtk.fasta [18:44:14] alignment.py (line 203): DEBUG: Writing alignment of type with length 0 to file /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_107/pplacer.extended.2.253ksg7c.fasta [18:44:14] alignment.py (line 203): DEBUG: Writing alignment of type with length 3128 to file /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_107/pplacer.backbone.ul6hzfy1.fasta [18:44:14] alignment.py (line 203): DEBUG: Writing alignment of type with length 0 to file /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_107/pplacer.extended.3.fbaz1j97.fasta [18:44:14] alignment.py (line 203): DEBUG: Writing alignment of type with length 3128 to file /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_107/pplacer.backbone.89evfnqe.fasta [18:44:14] alignment.py (line 203): DEBUG: Writing alignment of type with length 0 to file /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_107/pplacer.extended.4.dlou2uq8.fasta [18:44:14] alignment.py (line 203): DEBUG: Writing alignment of type with length 3128 to file /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_107/pplacer.backbone.hda1r3ug.fasta [18:44:14] alignment.py (line 203): DEBUG: Writing alignment of type with length 0 to file /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_107/pplacer.extended.5.zloewk0j.fasta [18:44:14] alignment.py (line 203): DEBUG: Writing alignment of type with length 3128 to file /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_107/pplacer.backbone.uzkcfjz0.fasta [18:44:14] alignment.py (line 203): DEBUG: Writing alignment of type with length 0 to file /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_107/pplacer.extended.6.w6xbuxkp.fasta [18:44:14] alignment.py (line 203): DEBUG: Writing alignment of type with length 3128 to file /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_107/pplacer.backbone.xpf1x1qz.fasta [18:44:14] alignment.py (line 203): DEBUG: Writing alignment of type with length 0 to file /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_107/pplacer.extended.7.hws58l_8.fasta [18:44:14] alignment.py (line 203): DEBUG: Writing alignment of type with length 3128 to file /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_107/pplacer.backbone.x5bbjlpd.fasta [18:44:14] exhaustive.py (line 151): INFO: Merging sub-alignments for placement problem : P_106. [18:44:14] problem.py (line 246): DEBUG: Reading /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_106/A_106_0/hmmbuild.input.q26xzzis.fasta [] and relabeling it based on 1524 orig column labels. [18:44:14] alignment.py (line 543): DEBUG: Reading base alignment: /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_106/A_106_0/hmmbuild.input.q26xzzis.fasta. [18:44:14] alignment.py (line 615): DEBUG: Relabeling 1524 (1524) with 1524 labels. [18:44:14] exhaustive.py (line 182): DEBUG: Merging alignment subset into placement subset for chunk 0: A_106_0. [18:44:14] alignment.py (line 727): DEBUG: Merging started ... [18:44:14] alignment.py (line 834): DEBUG: Merging finished ... [18:44:14] problem.py (line 246): DEBUG: Reading /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_106/A_106_1/hmmbuild.input.9abqq9g7.fasta [] and relabeling it based on 1519 orig column labels. [18:44:14] alignment.py (line 543): DEBUG: Reading base alignment: /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_106/A_106_1/hmmbuild.input.9abqq9g7.fasta. [18:44:14] alignment.py (line 615): DEBUG: Relabeling 1519 (1519) with 1519 labels. [18:44:14] exhaustive.py (line 182): DEBUG: Merging alignment subset into placement subset for chunk 0: A_106_1. [18:44:14] alignment.py (line 727): DEBUG: Merging started ... [18:44:14] alignment.py (line 834): DEBUG: Merging finished ... [18:44:14] problem.py (line 246): DEBUG: Reading /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_106/A_106_2/hmmbuild.input.5q8z11y4.fasta ['/tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_106/A_106_2/FC_106_2_0/hmmalign.results.7wn885_h'] and relabeling it based on 1575 orig column labels. [18:44:14] alignment.py (line 543): DEBUG: Reading base alignment: /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_106/A_106_2/hmmbuild.input.5q8z11y4.fasta. [18:44:14] alignment.py (line 553): DEBUG: Reading sto extended alignment: /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_106/A_106_2/FC_106_2_0/hmmalign.results.7wn885_h. [18:44:14] alignment.py (line 578): DEBUG: /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_106/A_106_2/FC_106_2_0/hmmalign.results.7wn885_h insertions: 0 [18:44:14] alignment.py (line 556): INFO: Merging extension sto file (/tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_106/A_106_2/FC_106_2_0/hmmalign.results.7wn885_h) into base alignment (/tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_106/A_106_2/hmmbuild.input.5q8z11y4.fasta). [18:44:14] alignment.py (line 727): DEBUG: Merging started ... [18:44:14] alignment.py (line 834): DEBUG: Merging finished ... [18:44:14] alignment.py (line 560): DEBUG: Finished merging extension sto file (/tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_106/A_106_2/FC_106_2_0/hmmalign.results.7wn885_h) into base alignment (/tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_106/A_106_2/hmmbuild.input.5q8z11y4.fasta). [18:44:14] alignment.py (line 615): DEBUG: Relabeling 1575 (1575) with 1575 labels. [18:44:14] exhaustive.py (line 182): DEBUG: Merging alignment subset into placement subset for chunk 0: A_106_2. [18:44:14] alignment.py (line 727): DEBUG: Merging started ... Traceback (most recent call last): File "/home/lisou/anaconda3/envs/qiime2-2022.8/lib/python3.8/site-packages/sepp/jobs.py", line 150, in run raise JobError("\n".join([ sepp.scheduler.JobError: The following execution failed: /home/lisou/anaconda3/envs/qiime2-2022.8/bin/pplacer --out-dir /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_20 -j 1 -r /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_20/pplacer.backbone.xtqkfk1r.fasta -s /tmp/qiime2/lisou/data/e44b5e78-31e5-4a0f-9041-494bc3ca2df2/data/raxml-info.txt -t /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_20/pplacer.tree.9kl4m1kd.tre --groups 10 /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_20/pplacer.extended.0.xp45k3qy.fasta No error messages available [18:44:14] jobs.py (line 80): DEBUG: Starting pplacer Job with input: backbone_alignment_file:/tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_23/pplacer.backbone.ypo0wd6c.fasta, tree_file:/tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_23/pplacer.tree.k_tfnayp.tre, info_file:/tmp/qiime2/lisou/data/e44b5e78-31e5-4a0f-9041-494bc3ca2df2/data/raxml-info.txt, extended alignment:/tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_23/pplacer.extended.0.gatmh265.fasta, output:/tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_23/pplacer.extended.0.gatmh265.jplace [18:44:14] jobs.py (line 106): DEBUG: Invocation of /home/lisou/anaconda3/envs/qiime2-2022.8/bin/pplacer --out-dir /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_23 -j 1 -r /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_23/pplacer.backbone.ypo0wd6c.fasta -s /tmp/qiime2/lisou/data/e44b5e78-31e5-4a0f-9041-494bc3ca2df2/data/raxml-info.txt -t /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_23/pplacer.tree.k_tfnayp.tre --groups 10 /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_23/pplacer.extended.0.gatmh265.fasta [18:44:14] alignment.py (line 834): DEBUG: Merging finished ... [18:44:14] problem.py (line 246): DEBUG: Reading /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_106/A_106_3/hmmbuild.input._3o595zs.fasta [] and relabeling it based on 1719 orig column labels. [18:44:14] alignment.py (line 543): DEBUG: Reading base alignment: /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_106/A_106_3/hmmbuild.input._3o595zs.fasta. [18:44:14] alignment.py (line 615): DEBUG: Relabeling 1719 (1719) with 1719 labels. [18:44:14] exhaustive.py (line 182): DEBUG: Merging alignment subset into placement subset for chunk 0: A_106_3. [18:44:14] alignment.py (line 727): DEBUG: Merging started ... Traceback (most recent call last): File "/home/lisou/anaconda3/envs/qiime2-2022.8/lib/python3.8/site-packages/sepp/jobs.py", line 150, in run raise JobError("\n".join([ sepp.scheduler.JobError: The following execution failed: /home/lisou/anaconda3/envs/qiime2-2022.8/bin/pplacer --out-dir /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_21 -j 1 -r /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_21/pplacer.backbone._slzjsx0.fasta -s /tmp/qiime2/lisou/data/e44b5e78-31e5-4a0f-9041-494bc3ca2df2/data/raxml-info.txt -t /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_21/pplacer.tree.58cr6km5.tre --groups 10 /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_21/pplacer.extended.0.0x1fuffu.fasta No error messages available [18:44:14] jobs.py (line 80): DEBUG: Starting pplacer Job with input: backbone_alignment_file:/tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_23/pplacer.backbone.n8j715e6.fasta, tree_file:/tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_23/pplacer.tree.cjcuqqvx.tre, info_file:/tmp/qiime2/lisou/data/e44b5e78-31e5-4a0f-9041-494bc3ca2df2/data/raxml-info.txt, extended alignment:/tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_23/pplacer.extended.1.9xs3ogf3.fasta, output:/tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_23/pplacer.extended.1.9xs3ogf3.jplace [18:44:14] jobs.py (line 106): DEBUG: Invocation of /home/lisou/anaconda3/envs/qiime2-2022.8/bin/pplacer --out-dir /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_23 -j 1 -r /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_23/pplacer.backbone.n8j715e6.fasta -s /tmp/qiime2/lisou/data/e44b5e78-31e5-4a0f-9041-494bc3ca2df2/data/raxml-info.txt -t /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_23/pplacer.tree.cjcuqqvx.tre --groups 10 /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_23/pplacer.extended.1.9xs3ogf3.fasta [18:44:14] alignment.py (line 834): DEBUG: Merging finished ... [18:44:14] problem.py (line 246): DEBUG: Reading /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_106/A_106_0/hmmbuild.input.q26xzzis.fasta [] and relabeling it based on 1524 orig column labels. [18:44:14] alignment.py (line 543): DEBUG: Reading base alignment: /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_106/A_106_0/hmmbuild.input.q26xzzis.fasta. [18:44:14] jobs.py (line 144): DEBUG: Finished pplacer Job with input: backbone_alignment_file:/tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_23/pplacer.backbone.ypo0wd6c.fasta, tree_file:/tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_23/pplacer.tree.k_tfnayp.tre, info_file:/tmp/qiime2/lisou/data/e44b5e78-31e5-4a0f-9041-494bc3ca2df2/data/raxml-info.txt, extended alignment:/tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_23/pplacer.extended.0.gatmh265.fasta, output:/tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_23/pplacer.extended.0.gatmh265.jplace with: return code: -11 output: error: [18:44:14] alignment.py (line 615): DEBUG: Relabeling 1524 (1524) with 1524 labels. [18:44:14] exhaustive.py (line 182): DEBUG: Merging alignment subset into placement subset for chunk 1: A_106_0. [18:44:14] alignment.py (line 727): DEBUG: Merging started ... [18:44:14] alignment.py (line 834): DEBUG: Merging finished ... [18:44:14] problem.py (line 246): DEBUG: Reading /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_106/A_106_1/hmmbuild.input.9abqq9g7.fasta [] and relabeling it based on 1519 orig column labels. [18:44:14] alignment.py (line 543): DEBUG: Reading base alignment: /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_106/A_106_1/hmmbuild.input.9abqq9g7.fasta. [18:44:14] alignment.py (line 615): DEBUG: Relabeling 1519 (1519) with 1519 labels. [18:44:14] exhaustive.py (line 182): DEBUG: Merging alignment subset into placement subset for chunk 1: A_106_1. [18:44:14] alignment.py (line 727): DEBUG: Merging started ... [18:44:14] jobs.py (line 144): DEBUG: Finished pplacer Job with input: backbone_alignment_file:/tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_23/pplacer.backbone.n8j715e6.fasta, tree_file:/tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_23/pplacer.tree.cjcuqqvx.tre, info_file:/tmp/qiime2/lisou/data/e44b5e78-31e5-4a0f-9041-494bc3ca2df2/data/raxml-info.txt, extended alignment:/tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_23/pplacer.extended.1.9xs3ogf3.fasta, output:/tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_23/pplacer.extended.1.9xs3ogf3.jplace with: return code: -11 output: error: [18:44:14] alignment.py (line 834): DEBUG: Merging finished ... [18:44:14] problem.py (line 246): DEBUG: Reading /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_106/A_106_2/hmmbuild.input.5q8z11y4.fasta [] and relabeling it based on 1575 orig column labels. [18:44:14] alignment.py (line 543): DEBUG: Reading base alignment: /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_106/A_106_2/hmmbuild.input.5q8z11y4.fasta. [18:44:14] alignment.py (line 615): DEBUG: Relabeling 1575 (1575) with 1575 labels. [18:44:14] exhaustive.py (line 182): DEBUG: Merging alignment subset into placement subset for chunk 1: A_106_2. [18:44:14] alignment.py (line 727): DEBUG: Merging started ... [18:44:14] alignment.py (line 834): DEBUG: Merging finished ... [18:44:14] problem.py (line 246): DEBUG: Reading /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_106/A_106_3/hmmbuild.input._3o595zs.fasta [] and relabeling it based on 1719 orig column labels. [18:44:14] alignment.py (line 543): DEBUG: Reading base alignment: /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_106/A_106_3/hmmbuild.input._3o595zs.fasta. [18:44:14] alignment.py (line 615): DEBUG: Relabeling 1719 (1719) with 1719 labels. [18:44:14] exhaustive.py (line 182): DEBUG: Merging alignment subset into placement subset for chunk 1: A_106_3. [18:44:14] alignment.py (line 727): DEBUG: Merging started ... [18:44:14] alignment.py (line 834): DEBUG: Merging finished ... [18:44:14] problem.py (line 246): DEBUG: Reading /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_106/A_106_0/hmmbuild.input.q26xzzis.fasta [] and relabeling it based on 1524 orig column labels. [18:44:14] alignment.py (line 543): DEBUG: Reading base alignment: /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_106/A_106_0/hmmbuild.input.q26xzzis.fasta. [18:44:14] alignment.py (line 615): DEBUG: Relabeling 1524 (1524) with 1524 labels. [18:44:14] exhaustive.py (line 182): DEBUG: Merging alignment subset into placement subset for chunk 2: A_106_0. [18:44:14] alignment.py (line 727): DEBUG: Merging started ... [18:44:14] alignment.py (line 834): DEBUG: Merging finished ... [18:44:14] problem.py (line 246): DEBUG: Reading /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_106/A_106_1/hmmbuild.input.9abqq9g7.fasta [] and relabeling it based on 1519 orig column labels. [18:44:14] alignment.py (line 543): DEBUG: Reading base alignment: /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_106/A_106_1/hmmbuild.input.9abqq9g7.fasta. [18:44:14] alignment.py (line 615): DEBUG: Relabeling 1519 (1519) with 1519 labels. [18:44:14] exhaustive.py (line 182): DEBUG: Merging alignment subset into placement subset for chunk 2: A_106_1. [18:44:14] alignment.py (line 727): DEBUG: Merging started ... [18:44:14] alignment.py (line 834): DEBUG: Merging finished ... [18:44:14] problem.py (line 246): DEBUG: Reading /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_106/A_106_2/hmmbuild.input.5q8z11y4.fasta [] and relabeling it based on 1575 orig column labels. [18:44:14] alignment.py (line 543): DEBUG: Reading base alignment: /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_106/A_106_2/hmmbuild.input.5q8z11y4.fasta. [18:44:14] alignment.py (line 615): DEBUG: Relabeling 1575 (1575) with 1575 labels. [18:44:14] exhaustive.py (line 182): DEBUG: Merging alignment subset into placement subset for chunk 2: A_106_2. [18:44:14] alignment.py (line 727): DEBUG: Merging started ... [18:44:14] alignment.py (line 834): DEBUG: Merging finished ... [18:44:14] problem.py (line 246): DEBUG: Reading /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_106/A_106_3/hmmbuild.input._3o595zs.fasta [] and relabeling it based on 1719 orig column labels. [18:44:14] alignment.py (line 543): DEBUG: Reading base alignment: /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_106/A_106_3/hmmbuild.input._3o595zs.fasta. [18:44:14] alignment.py (line 615): DEBUG: Relabeling 1719 (1719) with 1719 labels. [18:44:14] exhaustive.py (line 182): DEBUG: Merging alignment subset into placement subset for chunk 2: A_106_3. [18:44:14] alignment.py (line 727): DEBUG: Merging started ... [18:44:14] alignment.py (line 834): DEBUG: Merging finished ... [18:44:14] problem.py (line 246): DEBUG: Reading /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_106/A_106_0/hmmbuild.input.q26xzzis.fasta [] and relabeling it based on 1524 orig column labels. [18:44:14] alignment.py (line 543): DEBUG: Reading base alignment: /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_106/A_106_0/hmmbuild.input.q26xzzis.fasta. [18:44:14] alignment.py (line 615): DEBUG: Relabeling 1524 (1524) with 1524 labels. [18:44:14] exhaustive.py (line 182): DEBUG: Merging alignment subset into placement subset for chunk 3: A_106_0. [18:44:14] alignment.py (line 727): DEBUG: Merging started ... [18:44:14] alignment.py (line 834): DEBUG: Merging finished ... [18:44:14] problem.py (line 246): DEBUG: Reading /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_106/A_106_1/hmmbuild.input.9abqq9g7.fasta [] and relabeling it based on 1519 orig column labels. [18:44:14] alignment.py (line 543): DEBUG: Reading base alignment: /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_106/A_106_1/hmmbuild.input.9abqq9g7.fasta. [18:44:14] alignment.py (line 615): DEBUG: Relabeling 1519 (1519) with 1519 labels. [18:44:14] exhaustive.py (line 182): DEBUG: Merging alignment subset into placement subset for chunk 3: A_106_1. [18:44:14] alignment.py (line 727): DEBUG: Merging started ... [18:44:14] alignment.py (line 834): DEBUG: Merging finished ... [18:44:14] problem.py (line 246): DEBUG: Reading /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_106/A_106_2/hmmbuild.input.5q8z11y4.fasta [] and relabeling it based on 1575 orig column labels. [18:44:14] alignment.py (line 543): DEBUG: Reading base alignment: /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_106/A_106_2/hmmbuild.input.5q8z11y4.fasta. [18:44:14] alignment.py (line 615): DEBUG: Relabeling 1575 (1575) with 1575 labels. [18:44:14] exhaustive.py (line 182): DEBUG: Merging alignment subset into placement subset for chunk 3: A_106_2. [18:44:14] alignment.py (line 727): DEBUG: Merging started ... [18:44:14] alignment.py (line 834): DEBUG: Merging finished ... [18:44:14] problem.py (line 246): DEBUG: Reading /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_106/A_106_3/hmmbuild.input._3o595zs.fasta [] and relabeling it based on 1719 orig column labels. [18:44:14] alignment.py (line 543): DEBUG: Reading base alignment: /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_106/A_106_3/hmmbuild.input._3o595zs.fasta. [18:44:14] alignment.py (line 615): DEBUG: Relabeling 1719 (1719) with 1719 labels. [18:44:14] exhaustive.py (line 182): DEBUG: Merging alignment subset into placement subset for chunk 3: A_106_3. [18:44:14] alignment.py (line 727): DEBUG: Merging started ... [18:44:14] alignment.py (line 834): DEBUG: Merging finished ... [18:44:14] problem.py (line 246): DEBUG: Reading /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_106/A_106_0/hmmbuild.input.q26xzzis.fasta [] and relabeling it based on 1524 orig column labels. [18:44:14] alignment.py (line 543): DEBUG: Reading base alignment: /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_106/A_106_0/hmmbuild.input.q26xzzis.fasta. [18:44:14] alignment.py (line 615): DEBUG: Relabeling 1524 (1524) with 1524 labels. [18:44:14] exhaustive.py (line 182): DEBUG: Merging alignment subset into placement subset for chunk 4: A_106_0. [18:44:14] alignment.py (line 727): DEBUG: Merging started ... [18:44:14] alignment.py (line 834): DEBUG: Merging finished ... [18:44:14] problem.py (line 246): DEBUG: Reading /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_106/A_106_1/hmmbuild.input.9abqq9g7.fasta [] and relabeling it based on 1519 orig column labels. [18:44:14] alignment.py (line 543): DEBUG: Reading base alignment: /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_106/A_106_1/hmmbuild.input.9abqq9g7.fasta. [18:44:14] alignment.py (line 615): DEBUG: Relabeling 1519 (1519) with 1519 labels. [18:44:14] exhaustive.py (line 182): DEBUG: Merging alignment subset into placement subset for chunk 4: A_106_1. [18:44:14] alignment.py (line 727): DEBUG: Merging started ... [18:44:14] alignment.py (line 834): DEBUG: Merging finished ... [18:44:14] problem.py (line 246): DEBUG: Reading /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_106/A_106_2/hmmbuild.input.5q8z11y4.fasta [] and relabeling it based on 1575 orig column labels. [18:44:14] alignment.py (line 543): DEBUG: Reading base alignment: /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_106/A_106_2/hmmbuild.input.5q8z11y4.fasta. [18:44:14] alignment.py (line 615): DEBUG: Relabeling 1575 (1575) with 1575 labels. [18:44:14] exhaustive.py (line 182): DEBUG: Merging alignment subset into placement subset for chunk 4: A_106_2. [18:44:14] alignment.py (line 727): DEBUG: Merging started ... [18:44:14] alignment.py (line 834): DEBUG: Merging finished ... [18:44:14] problem.py (line 246): DEBUG: Reading /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_106/A_106_3/hmmbuild.input._3o595zs.fasta [] and relabeling it based on 1719 orig column labels. [18:44:14] alignment.py (line 543): DEBUG: Reading base alignment: /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_106/A_106_3/hmmbuild.input._3o595zs.fasta. [18:44:14] alignment.py (line 615): DEBUG: Relabeling 1719 (1719) with 1719 labels. [18:44:14] exhaustive.py (line 182): DEBUG: Merging alignment subset into placement subset for chunk 4: A_106_3. [18:44:14] alignment.py (line 727): DEBUG: Merging started ... [18:44:14] alignment.py (line 834): DEBUG: Merging finished ... [18:44:14] problem.py (line 246): DEBUG: Reading /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_106/A_106_0/hmmbuild.input.q26xzzis.fasta [] and relabeling it based on 1524 orig column labels. [18:44:14] alignment.py (line 543): DEBUG: Reading base alignment: /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_106/A_106_0/hmmbuild.input.q26xzzis.fasta. [18:44:14] alignment.py (line 615): DEBUG: Relabeling 1524 (1524) with 1524 labels. [18:44:14] exhaustive.py (line 182): DEBUG: Merging alignment subset into placement subset for chunk 5: A_106_0. [18:44:14] alignment.py (line 727): DEBUG: Merging started ... [18:44:14] alignment.py (line 834): DEBUG: Merging finished ... [18:44:14] problem.py (line 246): DEBUG: Reading /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_106/A_106_1/hmmbuild.input.9abqq9g7.fasta [] and relabeling it based on 1519 orig column labels. [18:44:14] alignment.py (line 543): DEBUG: Reading base alignment: /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_106/A_106_1/hmmbuild.input.9abqq9g7.fasta. [18:44:14] alignment.py (line 615): DEBUG: Relabeling 1519 (1519) with 1519 labels. [18:44:14] exhaustive.py (line 182): DEBUG: Merging alignment subset into placement subset for chunk 5: A_106_1. [18:44:14] alignment.py (line 727): DEBUG: Merging started ... [18:44:14] alignment.py (line 834): DEBUG: Merging finished ... [18:44:14] problem.py (line 246): DEBUG: Reading /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_106/A_106_2/hmmbuild.input.5q8z11y4.fasta [] and relabeling it based on 1575 orig column labels. [18:44:14] alignment.py (line 543): DEBUG: Reading base alignment: /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_106/A_106_2/hmmbuild.input.5q8z11y4.fasta. [18:44:14] alignment.py (line 615): DEBUG: Relabeling 1575 (1575) with 1575 labels. [18:44:14] exhaustive.py (line 182): DEBUG: Merging alignment subset into placement subset for chunk 5: A_106_2. [18:44:14] alignment.py (line 727): DEBUG: Merging started ... [18:44:14] alignment.py (line 834): DEBUG: Merging finished ... [18:44:14] problem.py (line 246): DEBUG: Reading /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_106/A_106_3/hmmbuild.input._3o595zs.fasta [] and relabeling it based on 1719 orig column labels. [18:44:14] alignment.py (line 543): DEBUG: Reading base alignment: /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_106/A_106_3/hmmbuild.input._3o595zs.fasta. [18:44:14] alignment.py (line 615): DEBUG: Relabeling 1719 (1719) with 1719 labels. [18:44:14] exhaustive.py (line 182): DEBUG: Merging alignment subset into placement subset for chunk 5: A_106_3. [18:44:14] alignment.py (line 727): DEBUG: Merging started ... [18:44:14] alignment.py (line 834): DEBUG: Merging finished ... [18:44:14] problem.py (line 246): DEBUG: Reading /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_106/A_106_0/hmmbuild.input.q26xzzis.fasta [] and relabeling it based on 1524 orig column labels. [18:44:14] alignment.py (line 543): DEBUG: Reading base alignment: /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_106/A_106_0/hmmbuild.input.q26xzzis.fasta. [18:44:14] alignment.py (line 615): DEBUG: Relabeling 1524 (1524) with 1524 labels. [18:44:14] exhaustive.py (line 182): DEBUG: Merging alignment subset into placement subset for chunk 6: A_106_0. [18:44:14] alignment.py (line 727): DEBUG: Merging started ... [18:44:14] alignment.py (line 834): DEBUG: Merging finished ... [18:44:14] problem.py (line 246): DEBUG: Reading /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_106/A_106_1/hmmbuild.input.9abqq9g7.fasta [] and relabeling it based on 1519 orig column labels. [18:44:14] alignment.py (line 543): DEBUG: Reading base alignment: /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_106/A_106_1/hmmbuild.input.9abqq9g7.fasta. [18:44:14] alignment.py (line 615): DEBUG: Relabeling 1519 (1519) with 1519 labels. [18:44:14] exhaustive.py (line 182): DEBUG: Merging alignment subset into placement subset for chunk 6: A_106_1. [18:44:14] alignment.py (line 727): DEBUG: Merging started ... [18:44:14] alignment.py (line 834): DEBUG: Merging finished ... [18:44:14] problem.py (line 246): DEBUG: Reading /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_106/A_106_2/hmmbuild.input.5q8z11y4.fasta [] and relabeling it based on 1575 orig column labels. [18:44:14] alignment.py (line 543): DEBUG: Reading base alignment: /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_106/A_106_2/hmmbuild.input.5q8z11y4.fasta. [18:44:14] alignment.py (line 615): DEBUG: Relabeling 1575 (1575) with 1575 labels. [18:44:14] exhaustive.py (line 182): DEBUG: Merging alignment subset into placement subset for chunk 6: A_106_2. [18:44:14] alignment.py (line 727): DEBUG: Merging started ... [18:44:14] alignment.py (line 834): DEBUG: Merging finished ... [18:44:14] problem.py (line 246): DEBUG: Reading /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_106/A_106_3/hmmbuild.input._3o595zs.fasta [] and relabeling it based on 1719 orig column labels. [18:44:14] alignment.py (line 543): DEBUG: Reading base alignment: /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_106/A_106_3/hmmbuild.input._3o595zs.fasta. [18:44:14] alignment.py (line 615): DEBUG: Relabeling 1719 (1719) with 1719 labels. [18:44:14] exhaustive.py (line 182): DEBUG: Merging alignment subset into placement subset for chunk 6: A_106_3. [18:44:14] alignment.py (line 727): DEBUG: Merging started ... [18:44:14] alignment.py (line 834): DEBUG: Merging finished ... [18:44:14] problem.py (line 246): DEBUG: Reading /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_106/A_106_0/hmmbuild.input.q26xzzis.fasta [] and relabeling it based on 1524 orig column labels. [18:44:14] alignment.py (line 543): DEBUG: Reading base alignment: /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_106/A_106_0/hmmbuild.input.q26xzzis.fasta. [18:44:14] alignment.py (line 615): DEBUG: Relabeling 1524 (1524) with 1524 labels. [18:44:14] exhaustive.py (line 182): DEBUG: Merging alignment subset into placement subset for chunk 7: A_106_0. [18:44:14] alignment.py (line 727): DEBUG: Merging started ... [18:44:14] alignment.py (line 834): DEBUG: Merging finished ... [18:44:14] problem.py (line 246): DEBUG: Reading /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_106/A_106_1/hmmbuild.input.9abqq9g7.fasta [] and relabeling it based on 1519 orig column labels. [18:44:14] alignment.py (line 543): DEBUG: Reading base alignment: /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_106/A_106_1/hmmbuild.input.9abqq9g7.fasta. [18:44:14] alignment.py (line 615): DEBUG: Relabeling 1519 (1519) with 1519 labels. [18:44:14] exhaustive.py (line 182): DEBUG: Merging alignment subset into placement subset for chunk 7: A_106_1. [18:44:14] alignment.py (line 727): DEBUG: Merging started ... [18:44:14] alignment.py (line 834): DEBUG: Merging finished ... [18:44:14] problem.py (line 246): DEBUG: Reading /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_106/A_106_2/hmmbuild.input.5q8z11y4.fasta [] and relabeling it based on 1575 orig column labels. [18:44:14] alignment.py (line 543): DEBUG: Reading base alignment: /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_106/A_106_2/hmmbuild.input.5q8z11y4.fasta. [18:44:14] alignment.py (line 615): DEBUG: Relabeling 1575 (1575) with 1575 labels. [18:44:14] exhaustive.py (line 182): DEBUG: Merging alignment subset into placement subset for chunk 7: A_106_2. [18:44:14] alignment.py (line 727): DEBUG: Merging started ... [18:44:14] alignment.py (line 834): DEBUG: Merging finished ... [18:44:14] problem.py (line 246): DEBUG: Reading /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_106/A_106_3/hmmbuild.input._3o595zs.fasta [] and relabeling it based on 1719 orig column labels. [18:44:14] alignment.py (line 543): DEBUG: Reading base alignment: /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_106/A_106_3/hmmbuild.input._3o595zs.fasta. [18:44:14] alignment.py (line 615): DEBUG: Relabeling 1719 (1719) with 1719 labels. [18:44:14] exhaustive.py (line 182): DEBUG: Merging alignment subset into placement subset for chunk 7: A_106_3. [18:44:14] alignment.py (line 727): DEBUG: Merging started ... [18:44:14] alignment.py (line 834): DEBUG: Merging finished ... [18:44:14] alignment.py (line 203): DEBUG: Writing alignment of type with length 1 to file /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_106/pplacer.extended.0.5qq9xp9h.fasta [18:44:14] alignment.py (line 203): DEBUG: Writing alignment of type with length 3193 to file /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_106/pplacer.backbone.8z5wcbny.fasta [18:44:14] alignment.py (line 203): DEBUG: Writing alignment of type with length 0 to file /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_106/pplacer.extended.1.rtkh3qea.fasta [18:44:14] alignment.py (line 203): DEBUG: Writing alignment of type with length 3193 to file /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_106/pplacer.backbone.nfz7kx7k.fasta [18:44:14] alignment.py (line 203): DEBUG: Writing alignment of type with length 0 to file /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_106/pplacer.extended.2.pti7f19t.fasta [18:44:14] alignment.py (line 203): DEBUG: Writing alignment of type with length 3193 to file /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_106/pplacer.backbone.uqtw_yqx.fasta [18:44:14] alignment.py (line 203): DEBUG: Writing alignment of type with length 0 to file /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_106/pplacer.extended.3.a3ep4ncs.fasta [18:44:14] alignment.py (line 203): DEBUG: Writing alignment of type with length 3193 to file /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_106/pplacer.backbone.8xf3zp7e.fasta [18:44:14] alignment.py (line 203): DEBUG: Writing alignment of type with length 0 to file /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_106/pplacer.extended.4.gx3e_1x_.fasta [18:44:14] alignment.py (line 203): DEBUG: Writing alignment of type with length 3193 to file /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_106/pplacer.backbone.83cvka6v.fasta [18:44:15] alignment.py (line 203): DEBUG: Writing alignment of type with length 0 to file /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_106/pplacer.extended.5.gy5yxr73.fasta [18:44:15] alignment.py (line 203): DEBUG: Writing alignment of type with length 3193 to file /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_106/pplacer.backbone.qgvcusjj.fasta [18:44:15] alignment.py (line 203): DEBUG: Writing alignment of type with length 0 to file /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_106/pplacer.extended.6.iqlm8r1c.fasta [18:44:15] alignment.py (line 203): DEBUG: Writing alignment of type with length 3193 to file /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_106/pplacer.backbone.86dix548.fasta [18:44:15] alignment.py (line 203): DEBUG: Writing alignment of type with length 0 to file /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_106/pplacer.extended.7.5ug5fhb6.fasta [18:44:15] alignment.py (line 203): DEBUG: Writing alignment of type with length 3193 to file /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_106/pplacer.backbone.aba8brgw.fasta [18:44:15] exhaustive.py (line 151): INFO: Merging sub-alignments for placement problem : P_108. [18:44:15] problem.py (line 246): DEBUG: Reading /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_108/A_108_0/hmmbuild.input.e4o0d4rr.fasta ['/tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_108/A_108_0/FC_108_0_0/hmmalign.results.w7xd3mij'] and relabeling it based on 1642 orig column labels. [18:44:15] alignment.py (line 543): DEBUG: Reading base alignment: /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_108/A_108_0/hmmbuild.input.e4o0d4rr.fasta. [18:44:15] alignment.py (line 553): DEBUG: Reading sto extended alignment: /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_108/A_108_0/FC_108_0_0/hmmalign.results.w7xd3mij. [18:44:15] alignment.py (line 578): DEBUG: /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_108/A_108_0/FC_108_0_0/hmmalign.results.w7xd3mij insertions: 0 [18:44:15] alignment.py (line 556): INFO: Merging extension sto file (/tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_108/A_108_0/FC_108_0_0/hmmalign.results.w7xd3mij) into base alignment (/tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_108/A_108_0/hmmbuild.input.e4o0d4rr.fasta). [18:44:15] alignment.py (line 727): DEBUG: Merging started ... [18:44:15] alignment.py (line 834): DEBUG: Merging finished ... [18:44:15] alignment.py (line 560): DEBUG: Finished merging extension sto file (/tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_108/A_108_0/FC_108_0_0/hmmalign.results.w7xd3mij) into base alignment (/tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_108/A_108_0/hmmbuild.input.e4o0d4rr.fasta). [18:44:15] alignment.py (line 615): DEBUG: Relabeling 1642 (1642) with 1642 labels. [18:44:15] exhaustive.py (line 182): DEBUG: Merging alignment subset into placement subset for chunk 0: A_108_0. [18:44:15] alignment.py (line 727): DEBUG: Merging started ... [18:44:15] alignment.py (line 834): DEBUG: Merging finished ... [18:44:15] problem.py (line 246): DEBUG: Reading /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_108/A_108_1/hmmbuild.input.gmpub7zg.fasta [] and relabeling it based on 1633 orig column labels. [18:44:15] alignment.py (line 543): DEBUG: Reading base alignment: /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_108/A_108_1/hmmbuild.input.gmpub7zg.fasta. [18:44:15] alignment.py (line 615): DEBUG: Relabeling 1633 (1633) with 1633 labels. [18:44:15] exhaustive.py (line 182): DEBUG: Merging alignment subset into placement subset for chunk 0: A_108_1. [18:44:15] alignment.py (line 727): DEBUG: Merging started ... [18:44:15] alignment.py (line 834): DEBUG: Merging finished ... [18:44:15] problem.py (line 246): DEBUG: Reading /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_108/A_108_2/hmmbuild.input.0rhfxnop.fasta ['/tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_108/A_108_2/FC_108_2_0/hmmalign.results.jepmsw05'] and relabeling it based on 1612 orig column labels. [18:44:15] alignment.py (line 543): DEBUG: Reading base alignment: /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_108/A_108_2/hmmbuild.input.0rhfxnop.fasta. [18:44:15] alignment.py (line 553): DEBUG: Reading sto extended alignment: /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_108/A_108_2/FC_108_2_0/hmmalign.results.jepmsw05. [18:44:15] alignment.py (line 578): DEBUG: /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_108/A_108_2/FC_108_2_0/hmmalign.results.jepmsw05 insertions: 0 [18:44:15] alignment.py (line 556): INFO: Merging extension sto file (/tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_108/A_108_2/FC_108_2_0/hmmalign.results.jepmsw05) into base alignment (/tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_108/A_108_2/hmmbuild.input.0rhfxnop.fasta). [18:44:15] alignment.py (line 727): DEBUG: Merging started ... [18:44:15] alignment.py (line 834): DEBUG: Merging finished ... [18:44:15] alignment.py (line 560): DEBUG: Finished merging extension sto file (/tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_108/A_108_2/FC_108_2_0/hmmalign.results.jepmsw05) into base alignment (/tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_108/A_108_2/hmmbuild.input.0rhfxnop.fasta). [18:44:15] alignment.py (line 615): DEBUG: Relabeling 1612 (1612) with 1612 labels. [18:44:15] exhaustive.py (line 182): DEBUG: Merging alignment subset into placement subset for chunk 0: A_108_2. [18:44:15] alignment.py (line 727): DEBUG: Merging started ... [18:44:15] alignment.py (line 834): DEBUG: Merging finished ... [18:44:15] problem.py (line 246): DEBUG: Reading /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_108/A_108_3/hmmbuild.input._u8dtftb.fasta ['/tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_108/A_108_3/FC_108_3_0/hmmalign.results.u9l8rpvy'] and relabeling it based on 1648 orig column labels. [18:44:15] alignment.py (line 543): DEBUG: Reading base alignment: /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_108/A_108_3/hmmbuild.input._u8dtftb.fasta. [18:44:15] alignment.py (line 553): DEBUG: Reading sto extended alignment: /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_108/A_108_3/FC_108_3_0/hmmalign.results.u9l8rpvy. [18:44:15] alignment.py (line 578): DEBUG: /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_108/A_108_3/FC_108_3_0/hmmalign.results.u9l8rpvy insertions: 0 [18:44:15] alignment.py (line 556): INFO: Merging extension sto file (/tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_108/A_108_3/FC_108_3_0/hmmalign.results.u9l8rpvy) into base alignment (/tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_108/A_108_3/hmmbuild.input._u8dtftb.fasta). [18:44:15] alignment.py (line 727): DEBUG: Merging started ... [18:44:15] alignment.py (line 834): DEBUG: Merging finished ... [18:44:15] alignment.py (line 560): DEBUG: Finished merging extension sto file (/tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_108/A_108_3/FC_108_3_0/hmmalign.results.u9l8rpvy) into base alignment (/tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_108/A_108_3/hmmbuild.input._u8dtftb.fasta). [18:44:15] alignment.py (line 615): DEBUG: Relabeling 1648 (1648) with 1648 labels. [18:44:15] exhaustive.py (line 182): DEBUG: Merging alignment subset into placement subset for chunk 0: A_108_3. [18:44:15] alignment.py (line 727): DEBUG: Merging started ... [18:44:15] alignment.py (line 834): DEBUG: Merging finished ... [18:44:15] problem.py (line 246): DEBUG: Reading /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_108/A_108_0/hmmbuild.input.e4o0d4rr.fasta [] and relabeling it based on 1642 orig column labels. [18:44:15] alignment.py (line 543): DEBUG: Reading base alignment: /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_108/A_108_0/hmmbuild.input.e4o0d4rr.fasta. [18:44:15] alignment.py (line 615): DEBUG: Relabeling 1642 (1642) with 1642 labels. [18:44:15] exhaustive.py (line 182): DEBUG: Merging alignment subset into placement subset for chunk 1: A_108_0. [18:44:15] alignment.py (line 727): DEBUG: Merging started ... [18:44:15] alignment.py (line 834): DEBUG: Merging finished ... [18:44:15] problem.py (line 246): DEBUG: Reading /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_108/A_108_1/hmmbuild.input.gmpub7zg.fasta [] and relabeling it based on 1633 orig column labels. [18:44:15] alignment.py (line 543): DEBUG: Reading base alignment: /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_108/A_108_1/hmmbuild.input.gmpub7zg.fasta. [18:44:15] alignment.py (line 615): DEBUG: Relabeling 1633 (1633) with 1633 labels. [18:44:15] exhaustive.py (line 182): DEBUG: Merging alignment subset into placement subset for chunk 1: A_108_1. [18:44:15] alignment.py (line 727): DEBUG: Merging started ... [18:44:15] alignment.py (line 834): DEBUG: Merging finished ... [18:44:15] problem.py (line 246): DEBUG: Reading /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_108/A_108_2/hmmbuild.input.0rhfxnop.fasta ['/tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_108/A_108_2/FC_108_2_1/hmmalign.results.5g07an8j'] and relabeling it based on 1612 orig column labels. [18:44:15] alignment.py (line 543): DEBUG: Reading base alignment: /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_108/A_108_2/hmmbuild.input.0rhfxnop.fasta. [18:44:15] alignment.py (line 553): DEBUG: Reading sto extended alignment: /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_108/A_108_2/FC_108_2_1/hmmalign.results.5g07an8j. [18:44:15] alignment.py (line 578): DEBUG: /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_108/A_108_2/FC_108_2_1/hmmalign.results.5g07an8j insertions: 0 [18:44:15] alignment.py (line 556): INFO: Merging extension sto file (/tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_108/A_108_2/FC_108_2_1/hmmalign.results.5g07an8j) into base alignment (/tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_108/A_108_2/hmmbuild.input.0rhfxnop.fasta). [18:44:15] alignment.py (line 727): DEBUG: Merging started ... [18:44:15] alignment.py (line 834): DEBUG: Merging finished ... [18:44:15] alignment.py (line 560): DEBUG: Finished merging extension sto file (/tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_108/A_108_2/FC_108_2_1/hmmalign.results.5g07an8j) into base alignment (/tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_108/A_108_2/hmmbuild.input.0rhfxnop.fasta). [18:44:15] alignment.py (line 615): DEBUG: Relabeling 1612 (1612) with 1612 labels. [18:44:15] exhaustive.py (line 182): DEBUG: Merging alignment subset into placement subset for chunk 1: A_108_2. [18:44:15] alignment.py (line 727): DEBUG: Merging started ... [18:44:15] alignment.py (line 834): DEBUG: Merging finished ... [18:44:15] problem.py (line 246): DEBUG: Reading /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_108/A_108_3/hmmbuild.input._u8dtftb.fasta ['/tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_108/A_108_3/FC_108_3_1/hmmalign.results.h3d1bcxf'] and relabeling it based on 1648 orig column labels. [18:44:15] alignment.py (line 543): DEBUG: Reading base alignment: /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_108/A_108_3/hmmbuild.input._u8dtftb.fasta. [18:44:15] alignment.py (line 553): DEBUG: Reading sto extended alignment: /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_108/A_108_3/FC_108_3_1/hmmalign.results.h3d1bcxf. [18:44:15] alignment.py (line 578): DEBUG: /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_108/A_108_3/FC_108_3_1/hmmalign.results.h3d1bcxf insertions: 0 [18:44:15] alignment.py (line 556): INFO: Merging extension sto file (/tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_108/A_108_3/FC_108_3_1/hmmalign.results.h3d1bcxf) into base alignment (/tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_108/A_108_3/hmmbuild.input._u8dtftb.fasta). [18:44:15] alignment.py (line 727): DEBUG: Merging started ... [18:44:15] alignment.py (line 834): DEBUG: Merging finished ... [18:44:15] alignment.py (line 560): DEBUG: Finished merging extension sto file (/tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_108/A_108_3/FC_108_3_1/hmmalign.results.h3d1bcxf) into base alignment (/tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_108/A_108_3/hmmbuild.input._u8dtftb.fasta). [18:44:15] alignment.py (line 615): DEBUG: Relabeling 1648 (1648) with 1648 labels. [18:44:15] exhaustive.py (line 182): DEBUG: Merging alignment subset into placement subset for chunk 1: A_108_3. [18:44:15] alignment.py (line 727): DEBUG: Merging started ... [18:44:15] alignment.py (line 834): DEBUG: Merging finished ... [18:44:15] problem.py (line 246): DEBUG: Reading /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_108/A_108_0/hmmbuild.input.e4o0d4rr.fasta [] and relabeling it based on 1642 orig column labels. [18:44:15] alignment.py (line 543): DEBUG: Reading base alignment: /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_108/A_108_0/hmmbuild.input.e4o0d4rr.fasta. [18:44:15] alignment.py (line 615): DEBUG: Relabeling 1642 (1642) with 1642 labels. [18:44:15] exhaustive.py (line 182): DEBUG: Merging alignment subset into placement subset for chunk 2: A_108_0. [18:44:15] alignment.py (line 727): DEBUG: Merging started ... [18:44:15] alignment.py (line 834): DEBUG: Merging finished ... [18:44:15] problem.py (line 246): DEBUG: Reading /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_108/A_108_1/hmmbuild.input.gmpub7zg.fasta [] and relabeling it based on 1633 orig column labels. [18:44:15] alignment.py (line 543): DEBUG: Reading base alignment: /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_108/A_108_1/hmmbuild.input.gmpub7zg.fasta. [18:44:15] alignment.py (line 615): DEBUG: Relabeling 1633 (1633) with 1633 labels. [18:44:15] exhaustive.py (line 182): DEBUG: Merging alignment subset into placement subset for chunk 2: A_108_1. [18:44:15] alignment.py (line 727): DEBUG: Merging started ... [18:44:15] alignment.py (line 834): DEBUG: Merging finished ... [18:44:15] problem.py (line 246): DEBUG: Reading /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_108/A_108_2/hmmbuild.input.0rhfxnop.fasta ['/tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_108/A_108_2/FC_108_2_2/hmmalign.results.j3krcamk'] and relabeling it based on 1612 orig column labels. [18:44:15] alignment.py (line 543): DEBUG: Reading base alignment: /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_108/A_108_2/hmmbuild.input.0rhfxnop.fasta. [18:44:15] alignment.py (line 553): DEBUG: Reading sto extended alignment: /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_108/A_108_2/FC_108_2_2/hmmalign.results.j3krcamk. [18:44:15] alignment.py (line 578): DEBUG: /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_108/A_108_2/FC_108_2_2/hmmalign.results.j3krcamk insertions: 0 [18:44:15] alignment.py (line 556): INFO: Merging extension sto file (/tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_108/A_108_2/FC_108_2_2/hmmalign.results.j3krcamk) into base alignment (/tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_108/A_108_2/hmmbuild.input.0rhfxnop.fasta). [18:44:15] alignment.py (line 727): DEBUG: Merging started ... [18:44:15] alignment.py (line 834): DEBUG: Merging finished ... [18:44:15] alignment.py (line 560): DEBUG: Finished merging extension sto file (/tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_108/A_108_2/FC_108_2_2/hmmalign.results.j3krcamk) into base alignment (/tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_108/A_108_2/hmmbuild.input.0rhfxnop.fasta). [18:44:15] alignment.py (line 615): DEBUG: Relabeling 1612 (1612) with 1612 labels. [18:44:15] exhaustive.py (line 182): DEBUG: Merging alignment subset into placement subset for chunk 2: A_108_2. [18:44:15] alignment.py (line 727): DEBUG: Merging started ... [18:44:15] alignment.py (line 834): DEBUG: Merging finished ... [18:44:15] problem.py (line 246): DEBUG: Reading /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_108/A_108_3/hmmbuild.input._u8dtftb.fasta [] and relabeling it based on 1648 orig column labels. [18:44:15] alignment.py (line 543): DEBUG: Reading base alignment: /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_108/A_108_3/hmmbuild.input._u8dtftb.fasta. [18:44:15] alignment.py (line 615): DEBUG: Relabeling 1648 (1648) with 1648 labels. [18:44:15] exhaustive.py (line 182): DEBUG: Merging alignment subset into placement subset for chunk 2: A_108_3. [18:44:15] alignment.py (line 727): DEBUG: Merging started ... [18:44:15] alignment.py (line 834): DEBUG: Merging finished ... [18:44:15] problem.py (line 246): DEBUG: Reading /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_108/A_108_0/hmmbuild.input.e4o0d4rr.fasta [] and relabeling it based on 1642 orig column labels. [18:44:15] alignment.py (line 543): DEBUG: Reading base alignment: /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_108/A_108_0/hmmbuild.input.e4o0d4rr.fasta. [18:44:15] alignment.py (line 615): DEBUG: Relabeling 1642 (1642) with 1642 labels. [18:44:15] exhaustive.py (line 182): DEBUG: Merging alignment subset into placement subset for chunk 3: A_108_0. [18:44:15] alignment.py (line 727): DEBUG: Merging started ... [18:44:15] alignment.py (line 834): DEBUG: Merging finished ... [18:44:15] problem.py (line 246): DEBUG: Reading /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_108/A_108_1/hmmbuild.input.gmpub7zg.fasta [] and relabeling it based on 1633 orig column labels. [18:44:15] alignment.py (line 543): DEBUG: Reading base alignment: /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_108/A_108_1/hmmbuild.input.gmpub7zg.fasta. [18:44:15] alignment.py (line 615): DEBUG: Relabeling 1633 (1633) with 1633 labels. [18:44:15] exhaustive.py (line 182): DEBUG: Merging alignment subset into placement subset for chunk 3: A_108_1. [18:44:15] alignment.py (line 727): DEBUG: Merging started ... [18:44:15] alignment.py (line 834): DEBUG: Merging finished ... [18:44:15] problem.py (line 246): DEBUG: Reading /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_108/A_108_2/hmmbuild.input.0rhfxnop.fasta ['/tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_108/A_108_2/FC_108_2_3/hmmalign.results.mjp4aiom'] and relabeling it based on 1612 orig column labels. [18:44:15] alignment.py (line 543): DEBUG: Reading base alignment: /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_108/A_108_2/hmmbuild.input.0rhfxnop.fasta. [18:44:15] alignment.py (line 553): DEBUG: Reading sto extended alignment: /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_108/A_108_2/FC_108_2_3/hmmalign.results.mjp4aiom. [18:44:15] alignment.py (line 578): DEBUG: /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_108/A_108_2/FC_108_2_3/hmmalign.results.mjp4aiom insertions: 0 [18:44:15] alignment.py (line 556): INFO: Merging extension sto file (/tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_108/A_108_2/FC_108_2_3/hmmalign.results.mjp4aiom) into base alignment (/tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_108/A_108_2/hmmbuild.input.0rhfxnop.fasta). [18:44:15] alignment.py (line 727): DEBUG: Merging started ... [18:44:15] alignment.py (line 834): DEBUG: Merging finished ... [18:44:15] alignment.py (line 560): DEBUG: Finished merging extension sto file (/tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_108/A_108_2/FC_108_2_3/hmmalign.results.mjp4aiom) into base alignment (/tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_108/A_108_2/hmmbuild.input.0rhfxnop.fasta). [18:44:15] alignment.py (line 615): DEBUG: Relabeling 1612 (1612) with 1612 labels. [18:44:15] exhaustive.py (line 182): DEBUG: Merging alignment subset into placement subset for chunk 3: A_108_2. [18:44:15] alignment.py (line 727): DEBUG: Merging started ... [18:44:15] alignment.py (line 834): DEBUG: Merging finished ... [18:44:15] problem.py (line 246): DEBUG: Reading /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_108/A_108_3/hmmbuild.input._u8dtftb.fasta [] and relabeling it based on 1648 orig column labels. [18:44:15] alignment.py (line 543): DEBUG: Reading base alignment: /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_108/A_108_3/hmmbuild.input._u8dtftb.fasta. [18:44:15] alignment.py (line 615): DEBUG: Relabeling 1648 (1648) with 1648 labels. [18:44:15] exhaustive.py (line 182): DEBUG: Merging alignment subset into placement subset for chunk 3: A_108_3. [18:44:15] alignment.py (line 727): DEBUG: Merging started ... [18:44:15] alignment.py (line 834): DEBUG: Merging finished ... [18:44:15] problem.py (line 246): DEBUG: Reading /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_108/A_108_0/hmmbuild.input.e4o0d4rr.fasta [] and relabeling it based on 1642 orig column labels. [18:44:15] alignment.py (line 543): DEBUG: Reading base alignment: /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_108/A_108_0/hmmbuild.input.e4o0d4rr.fasta. [18:44:15] alignment.py (line 615): DEBUG: Relabeling 1642 (1642) with 1642 labels. [18:44:15] exhaustive.py (line 182): DEBUG: Merging alignment subset into placement subset for chunk 4: A_108_0. [18:44:15] alignment.py (line 727): DEBUG: Merging started ... [18:44:15] alignment.py (line 834): DEBUG: Merging finished ... [18:44:15] problem.py (line 246): DEBUG: Reading /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_108/A_108_1/hmmbuild.input.gmpub7zg.fasta [] and relabeling it based on 1633 orig column labels. [18:44:15] alignment.py (line 543): DEBUG: Reading base alignment: /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_108/A_108_1/hmmbuild.input.gmpub7zg.fasta. [18:44:15] alignment.py (line 615): DEBUG: Relabeling 1633 (1633) with 1633 labels. [18:44:15] exhaustive.py (line 182): DEBUG: Merging alignment subset into placement subset for chunk 4: A_108_1. [18:44:15] alignment.py (line 727): DEBUG: Merging started ... [18:44:15] alignment.py (line 834): DEBUG: Merging finished ... [18:44:15] problem.py (line 246): DEBUG: Reading /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_108/A_108_2/hmmbuild.input.0rhfxnop.fasta ['/tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_108/A_108_2/FC_108_2_4/hmmalign.results.n6rw2h06'] and relabeling it based on 1612 orig column labels. [18:44:15] alignment.py (line 543): DEBUG: Reading base alignment: /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_108/A_108_2/hmmbuild.input.0rhfxnop.fasta. [18:44:15] alignment.py (line 553): DEBUG: Reading sto extended alignment: /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_108/A_108_2/FC_108_2_4/hmmalign.results.n6rw2h06. [18:44:15] alignment.py (line 578): DEBUG: /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_108/A_108_2/FC_108_2_4/hmmalign.results.n6rw2h06 insertions: 0 [18:44:15] alignment.py (line 556): INFO: Merging extension sto file (/tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_108/A_108_2/FC_108_2_4/hmmalign.results.n6rw2h06) into base alignment (/tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_108/A_108_2/hmmbuild.input.0rhfxnop.fasta). [18:44:15] alignment.py (line 727): DEBUG: Merging started ... [18:44:15] alignment.py (line 834): DEBUG: Merging finished ... [18:44:15] alignment.py (line 560): DEBUG: Finished merging extension sto file (/tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_108/A_108_2/FC_108_2_4/hmmalign.results.n6rw2h06) into base alignment (/tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_108/A_108_2/hmmbuild.input.0rhfxnop.fasta). [18:44:15] alignment.py (line 615): DEBUG: Relabeling 1612 (1612) with 1612 labels. [18:44:15] exhaustive.py (line 182): DEBUG: Merging alignment subset into placement subset for chunk 4: A_108_2. [18:44:15] alignment.py (line 727): DEBUG: Merging started ... [18:44:15] alignment.py (line 834): DEBUG: Merging finished ... [18:44:15] problem.py (line 246): DEBUG: Reading /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_108/A_108_3/hmmbuild.input._u8dtftb.fasta [] and relabeling it based on 1648 orig column labels. [18:44:15] alignment.py (line 543): DEBUG: Reading base alignment: /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_108/A_108_3/hmmbuild.input._u8dtftb.fasta. [18:44:15] alignment.py (line 615): DEBUG: Relabeling 1648 (1648) with 1648 labels. [18:44:15] exhaustive.py (line 182): DEBUG: Merging alignment subset into placement subset for chunk 4: A_108_3. [18:44:15] alignment.py (line 727): DEBUG: Merging started ... [18:44:15] alignment.py (line 834): DEBUG: Merging finished ... [18:44:15] problem.py (line 246): DEBUG: Reading /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_108/A_108_0/hmmbuild.input.e4o0d4rr.fasta [] and relabeling it based on 1642 orig column labels. [18:44:15] alignment.py (line 543): DEBUG: Reading base alignment: /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_108/A_108_0/hmmbuild.input.e4o0d4rr.fasta. [18:44:15] alignment.py (line 615): DEBUG: Relabeling 1642 (1642) with 1642 labels. [18:44:15] exhaustive.py (line 182): DEBUG: Merging alignment subset into placement subset for chunk 5: A_108_0. [18:44:15] alignment.py (line 727): DEBUG: Merging started ... [18:44:15] alignment.py (line 834): DEBUG: Merging finished ... [18:44:15] problem.py (line 246): DEBUG: Reading /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_108/A_108_1/hmmbuild.input.gmpub7zg.fasta [] and relabeling it based on 1633 orig column labels. [18:44:15] alignment.py (line 543): DEBUG: Reading base alignment: /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_108/A_108_1/hmmbuild.input.gmpub7zg.fasta. [18:44:15] alignment.py (line 615): DEBUG: Relabeling 1633 (1633) with 1633 labels. [18:44:15] exhaustive.py (line 182): DEBUG: Merging alignment subset into placement subset for chunk 5: A_108_1. [18:44:15] alignment.py (line 727): DEBUG: Merging started ... [18:44:15] alignment.py (line 834): DEBUG: Merging finished ... [18:44:15] problem.py (line 246): DEBUG: Reading /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_108/A_108_2/hmmbuild.input.0rhfxnop.fasta ['/tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_108/A_108_2/FC_108_2_5/hmmalign.results.82oq3wm9'] and relabeling it based on 1612 orig column labels. [18:44:15] alignment.py (line 543): DEBUG: Reading base alignment: /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_108/A_108_2/hmmbuild.input.0rhfxnop.fasta. [18:44:15] alignment.py (line 553): DEBUG: Reading sto extended alignment: /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_108/A_108_2/FC_108_2_5/hmmalign.results.82oq3wm9. [18:44:15] alignment.py (line 578): DEBUG: /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_108/A_108_2/FC_108_2_5/hmmalign.results.82oq3wm9 insertions: 0 [18:44:15] alignment.py (line 556): INFO: Merging extension sto file (/tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_108/A_108_2/FC_108_2_5/hmmalign.results.82oq3wm9) into base alignment (/tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_108/A_108_2/hmmbuild.input.0rhfxnop.fasta). [18:44:15] alignment.py (line 727): DEBUG: Merging started ... [18:44:15] alignment.py (line 834): DEBUG: Merging finished ... [18:44:15] alignment.py (line 560): DEBUG: Finished merging extension sto file (/tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_108/A_108_2/FC_108_2_5/hmmalign.results.82oq3wm9) into base alignment (/tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_108/A_108_2/hmmbuild.input.0rhfxnop.fasta). [18:44:15] alignment.py (line 615): DEBUG: Relabeling 1612 (1612) with 1612 labels. [18:44:15] exhaustive.py (line 182): DEBUG: Merging alignment subset into placement subset for chunk 5: A_108_2. [18:44:15] alignment.py (line 727): DEBUG: Merging started ... [18:44:15] alignment.py (line 834): DEBUG: Merging finished ... [18:44:15] problem.py (line 246): DEBUG: Reading /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_108/A_108_3/hmmbuild.input._u8dtftb.fasta [] and relabeling it based on 1648 orig column labels. [18:44:15] alignment.py (line 543): DEBUG: Reading base alignment: /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_108/A_108_3/hmmbuild.input._u8dtftb.fasta. [18:44:15] alignment.py (line 615): DEBUG: Relabeling 1648 (1648) with 1648 labels. [18:44:15] exhaustive.py (line 182): DEBUG: Merging alignment subset into placement subset for chunk 5: A_108_3. [18:44:15] alignment.py (line 727): DEBUG: Merging started ... [18:44:15] alignment.py (line 834): DEBUG: Merging finished ... [18:44:15] problem.py (line 246): DEBUG: Reading /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_108/A_108_0/hmmbuild.input.e4o0d4rr.fasta [] and relabeling it based on 1642 orig column labels. [18:44:15] alignment.py (line 543): DEBUG: Reading base alignment: /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_108/A_108_0/hmmbuild.input.e4o0d4rr.fasta. [18:44:15] alignment.py (line 615): DEBUG: Relabeling 1642 (1642) with 1642 labels. [18:44:15] exhaustive.py (line 182): DEBUG: Merging alignment subset into placement subset for chunk 6: A_108_0. [18:44:15] alignment.py (line 727): DEBUG: Merging started ... [18:44:15] alignment.py (line 834): DEBUG: Merging finished ... [18:44:15] problem.py (line 246): DEBUG: Reading /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_108/A_108_1/hmmbuild.input.gmpub7zg.fasta [] and relabeling it based on 1633 orig column labels. [18:44:15] alignment.py (line 543): DEBUG: Reading base alignment: /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_108/A_108_1/hmmbuild.input.gmpub7zg.fasta. [18:44:15] alignment.py (line 615): DEBUG: Relabeling 1633 (1633) with 1633 labels. [18:44:15] exhaustive.py (line 182): DEBUG: Merging alignment subset into placement subset for chunk 6: A_108_1. [18:44:15] alignment.py (line 727): DEBUG: Merging started ... [18:44:15] alignment.py (line 834): DEBUG: Merging finished ... [18:44:15] problem.py (line 246): DEBUG: Reading /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_108/A_108_2/hmmbuild.input.0rhfxnop.fasta [] and relabeling it based on 1612 orig column labels. [18:44:15] alignment.py (line 543): DEBUG: Reading base alignment: /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_108/A_108_2/hmmbuild.input.0rhfxnop.fasta. [18:44:15] alignment.py (line 615): DEBUG: Relabeling 1612 (1612) with 1612 labels. [18:44:15] exhaustive.py (line 182): DEBUG: Merging alignment subset into placement subset for chunk 6: A_108_2. [18:44:15] alignment.py (line 727): DEBUG: Merging started ... [18:44:15] alignment.py (line 834): DEBUG: Merging finished ... [18:44:15] problem.py (line 246): DEBUG: Reading /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_108/A_108_3/hmmbuild.input._u8dtftb.fasta [] and relabeling it based on 1648 orig column labels. [18:44:15] alignment.py (line 543): DEBUG: Reading base alignment: /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_108/A_108_3/hmmbuild.input._u8dtftb.fasta. [18:44:15] alignment.py (line 615): DEBUG: Relabeling 1648 (1648) with 1648 labels. [18:44:15] exhaustive.py (line 182): DEBUG: Merging alignment subset into placement subset for chunk 6: A_108_3. [18:44:15] alignment.py (line 727): DEBUG: Merging started ... [18:44:15] alignment.py (line 834): DEBUG: Merging finished ... [18:44:15] problem.py (line 246): DEBUG: Reading /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_108/A_108_0/hmmbuild.input.e4o0d4rr.fasta [] and relabeling it based on 1642 orig column labels. [18:44:15] alignment.py (line 543): DEBUG: Reading base alignment: /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_108/A_108_0/hmmbuild.input.e4o0d4rr.fasta. [18:44:15] alignment.py (line 615): DEBUG: Relabeling 1642 (1642) with 1642 labels. [18:44:15] exhaustive.py (line 182): DEBUG: Merging alignment subset into placement subset for chunk 7: A_108_0. [18:44:15] alignment.py (line 727): DEBUG: Merging started ... [18:44:15] alignment.py (line 834): DEBUG: Merging finished ... [18:44:15] problem.py (line 246): DEBUG: Reading /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_108/A_108_1/hmmbuild.input.gmpub7zg.fasta [] and relabeling it based on 1633 orig column labels. [18:44:15] alignment.py (line 543): DEBUG: Reading base alignment: /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_108/A_108_1/hmmbuild.input.gmpub7zg.fasta. [18:44:15] alignment.py (line 615): DEBUG: Relabeling 1633 (1633) with 1633 labels. [18:44:15] exhaustive.py (line 182): DEBUG: Merging alignment subset into placement subset for chunk 7: A_108_1. [18:44:15] alignment.py (line 727): DEBUG: Merging started ... [18:44:15] alignment.py (line 834): DEBUG: Merging finished ... [18:44:15] problem.py (line 246): DEBUG: Reading /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_108/A_108_2/hmmbuild.input.0rhfxnop.fasta [] and relabeling it based on 1612 orig column labels. [18:44:15] alignment.py (line 543): DEBUG: Reading base alignment: /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_108/A_108_2/hmmbuild.input.0rhfxnop.fasta. [18:44:15] alignment.py (line 615): DEBUG: Relabeling 1612 (1612) with 1612 labels. [18:44:15] exhaustive.py (line 182): DEBUG: Merging alignment subset into placement subset for chunk 7: A_108_2. [18:44:15] alignment.py (line 727): DEBUG: Merging started ... [18:44:15] alignment.py (line 834): DEBUG: Merging finished ... [18:44:15] problem.py (line 246): DEBUG: Reading /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_108/A_108_3/hmmbuild.input._u8dtftb.fasta [] and relabeling it based on 1648 orig column labels. [18:44:15] alignment.py (line 543): DEBUG: Reading base alignment: /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_108/A_108_3/hmmbuild.input._u8dtftb.fasta. [18:44:15] alignment.py (line 615): DEBUG: Relabeling 1648 (1648) with 1648 labels. [18:44:15] exhaustive.py (line 182): DEBUG: Merging alignment subset into placement subset for chunk 7: A_108_3. [18:44:15] alignment.py (line 727): DEBUG: Merging started ... [18:44:15] alignment.py (line 834): DEBUG: Merging finished ... [18:44:15] alignment.py (line 203): DEBUG: Writing alignment of type with length 3 to file /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_108/pplacer.extended.0.zy9_qmrx.fasta [18:44:15] alignment.py (line 203): DEBUG: Writing alignment of type with length 2801 to file /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_108/pplacer.backbone.y5ispkjv.fasta [18:44:15] alignment.py (line 203): DEBUG: Writing alignment of type with length 2 to file /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_108/pplacer.extended.1.1_em3xaz.fasta [18:44:15] alignment.py (line 203): DEBUG: Writing alignment of type with length 2801 to file /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_108/pplacer.backbone.r4e4fzgp.fasta [18:44:15] alignment.py (line 203): DEBUG: Writing alignment of type with length 1 to file /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_108/pplacer.extended.2.texgd9si.fasta [18:44:15] alignment.py (line 203): DEBUG: Writing alignment of type with length 2801 to file /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_108/pplacer.backbone.4mt3_lpe.fasta [18:44:15] alignment.py (line 203): DEBUG: Writing alignment of type with length 1 to file /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_108/pplacer.extended.3.65ypfywi.fasta [18:44:15] alignment.py (line 203): DEBUG: Writing alignment of type with length 2801 to file /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_108/pplacer.backbone.fvsgayw_.fasta [18:44:15] alignment.py (line 203): DEBUG: Writing alignment of type with length 1 to file /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_108/pplacer.extended.4.itw1uchj.fasta [18:44:15] alignment.py (line 203): DEBUG: Writing alignment of type with length 2801 to file /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_108/pplacer.backbone.y80vthgj.fasta [18:44:15] alignment.py (line 203): DEBUG: Writing alignment of type with length 1 to file /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_108/pplacer.extended.5.zq90fzau.fasta [18:44:15] alignment.py (line 203): DEBUG: Writing alignment of type with length 2801 to file /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_108/pplacer.backbone.gl7v1ins.fasta [18:44:15] alignment.py (line 203): DEBUG: Writing alignment of type with length 0 to file /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_108/pplacer.extended.6.7m1iv0sk.fasta [18:44:15] alignment.py (line 203): DEBUG: Writing alignment of type with length 2801 to file /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_108/pplacer.backbone.bm8h812a.fasta [18:44:15] alignment.py (line 203): DEBUG: Writing alignment of type with length 0 to file /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_108/pplacer.extended.7._hegswex.fasta [18:44:15] alignment.py (line 203): DEBUG: Writing alignment of type with length 2801 to file /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_108/pplacer.backbone.em7a4t7c.fasta [18:44:15] exhaustive.py (line 151): INFO: Merging sub-alignments for placement problem : P_110. [18:44:15] problem.py (line 246): DEBUG: Reading /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_110/A_110_0/hmmbuild.input.vdj82mt3.fasta [] and relabeling it based on 1591 orig column labels. [18:44:15] alignment.py (line 543): DEBUG: Reading base alignment: /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_110/A_110_0/hmmbuild.input.vdj82mt3.fasta. [18:44:15] alignment.py (line 615): DEBUG: Relabeling 1591 (1591) with 1591 labels. [18:44:15] exhaustive.py (line 182): DEBUG: Merging alignment subset into placement subset for chunk 0: A_110_0. [18:44:15] alignment.py (line 727): DEBUG: Merging started ... [18:44:15] alignment.py (line 834): DEBUG: Merging finished ... [18:44:15] problem.py (line 246): DEBUG: Reading /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_110/A_110_1/hmmbuild.input.vq6_1lxi.fasta ['/tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_110/A_110_1/FC_110_1_0/hmmalign.results.3jcd5uc7'] and relabeling it based on 1609 orig column labels. [18:44:15] alignment.py (line 543): DEBUG: Reading base alignment: /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_110/A_110_1/hmmbuild.input.vq6_1lxi.fasta. [18:44:15] alignment.py (line 553): DEBUG: Reading sto extended alignment: /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_110/A_110_1/FC_110_1_0/hmmalign.results.3jcd5uc7. [18:44:15] alignment.py (line 578): DEBUG: /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_110/A_110_1/FC_110_1_0/hmmalign.results.3jcd5uc7 insertions: 0 [18:44:15] alignment.py (line 556): INFO: Merging extension sto file (/tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_110/A_110_1/FC_110_1_0/hmmalign.results.3jcd5uc7) into base alignment (/tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_110/A_110_1/hmmbuild.input.vq6_1lxi.fasta). [18:44:15] alignment.py (line 727): DEBUG: Merging started ... [18:44:15] alignment.py (line 834): DEBUG: Merging finished ... [18:44:15] alignment.py (line 560): DEBUG: Finished merging extension sto file (/tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_110/A_110_1/FC_110_1_0/hmmalign.results.3jcd5uc7) into base alignment (/tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_110/A_110_1/hmmbuild.input.vq6_1lxi.fasta). [18:44:15] alignment.py (line 615): DEBUG: Relabeling 1609 (1609) with 1609 labels. [18:44:15] exhaustive.py (line 182): DEBUG: Merging alignment subset into placement subset for chunk 0: A_110_1. [18:44:15] alignment.py (line 727): DEBUG: Merging started ... [18:44:15] alignment.py (line 834): DEBUG: Merging finished ... [18:44:15] problem.py (line 246): DEBUG: Reading /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_110/A_110_2/hmmbuild.input.9en_98h0.fasta ['/tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_110/A_110_2/FC_110_2_0/hmmalign.results.vbz7679j'] and relabeling it based on 1593 orig column labels. [18:44:15] alignment.py (line 543): DEBUG: Reading base alignment: /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_110/A_110_2/hmmbuild.input.9en_98h0.fasta. [18:44:15] alignment.py (line 553): DEBUG: Reading sto extended alignment: /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_110/A_110_2/FC_110_2_0/hmmalign.results.vbz7679j. [18:44:15] alignment.py (line 578): DEBUG: /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_110/A_110_2/FC_110_2_0/hmmalign.results.vbz7679j insertions: 2 [18:44:15] alignment.py (line 556): INFO: Merging extension sto file (/tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_110/A_110_2/FC_110_2_0/hmmalign.results.vbz7679j) into base alignment (/tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_110/A_110_2/hmmbuild.input.9en_98h0.fasta). [18:44:15] alignment.py (line 727): DEBUG: Merging started ... [18:44:15] alignment.py (line 834): DEBUG: Merging finished ... [18:44:15] alignment.py (line 560): DEBUG: Finished merging extension sto file (/tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_110/A_110_2/FC_110_2_0/hmmalign.results.vbz7679j) into base alignment (/tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_110/A_110_2/hmmbuild.input.9en_98h0.fasta). [18:44:15] alignment.py (line 615): DEBUG: Relabeling 1595 (1595) with 1593 labels. [18:44:15] exhaustive.py (line 182): DEBUG: Merging alignment subset into placement subset for chunk 0: A_110_2. [18:44:15] alignment.py (line 727): DEBUG: Merging started ... [18:44:15] alignment.py (line 834): DEBUG: Merging finished ... [18:44:15] problem.py (line 246): DEBUG: Reading /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_110/A_110_3/hmmbuild.input.ip1oyod9.fasta [] and relabeling it based on 1636 orig column labels. [18:44:15] alignment.py (line 543): DEBUG: Reading base alignment: /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_110/A_110_3/hmmbuild.input.ip1oyod9.fasta. [18:44:15] alignment.py (line 615): DEBUG: Relabeling 1636 (1636) with 1636 labels. [18:44:15] exhaustive.py (line 182): DEBUG: Merging alignment subset into placement subset for chunk 0: A_110_3. [18:44:15] alignment.py (line 727): DEBUG: Merging started ... Traceback (most recent call last): File "/home/lisou/anaconda3/envs/qiime2-2022.8/lib/python3.8/site-packages/sepp/jobs.py", line 150, in run raise JobError("\n".join([ sepp.scheduler.JobError: The following execution failed: /home/lisou/anaconda3/envs/qiime2-2022.8/bin/pplacer --out-dir /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_18 -j 1 -r /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_18/pplacer.backbone.d32mj_ru.fasta -s /tmp/qiime2/lisou/data/e44b5e78-31e5-4a0f-9041-494bc3ca2df2/data/raxml-info.txt -t /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_18/pplacer.tree.__18tr0p.tre --groups 10 /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_18/pplacer.extended.1.05u9z3gj.fasta No error messages available [18:44:15] jobs.py (line 80): DEBUG: Starting pplacer Job with input: backbone_alignment_file:/tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_22/pplacer.backbone.ww_1gcri.fasta, tree_file:/tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_22/pplacer.tree.mippxatp.tre, info_file:/tmp/qiime2/lisou/data/e44b5e78-31e5-4a0f-9041-494bc3ca2df2/data/raxml-info.txt, extended alignment:/tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_22/pplacer.extended.0.v_qoew7u.fasta, output:/tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_22/pplacer.extended.0.v_qoew7u.jplace [18:44:15] jobs.py (line 106): DEBUG: Invocation of /home/lisou/anaconda3/envs/qiime2-2022.8/bin/pplacer --out-dir /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_22 -j 1 -r /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_22/pplacer.backbone.ww_1gcri.fasta -s /tmp/qiime2/lisou/data/e44b5e78-31e5-4a0f-9041-494bc3ca2df2/data/raxml-info.txt -t /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_22/pplacer.tree.mippxatp.tre --groups 10 /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_22/pplacer.extended.0.v_qoew7u.fasta [18:44:15] alignment.py (line 834): DEBUG: Merging finished ... [18:44:15] problem.py (line 246): DEBUG: Reading /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_110/A_110_4/hmmbuild.input.xp6wlpyp.fasta ['/tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_110/A_110_4/FC_110_4_0/hmmalign.results.asq1u5s6'] and relabeling it based on 1599 orig column labels. [18:44:15] alignment.py (line 543): DEBUG: Reading base alignment: /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_110/A_110_4/hmmbuild.input.xp6wlpyp.fasta. Traceback (most recent call last): File "/home/lisou/anaconda3/envs/qiime2-2022.8/lib/python3.8/site-packages/sepp/jobs.py", line 150, in run raise JobError("\n".join([ sepp.scheduler.JobError: The following execution failed: /home/lisou/anaconda3/envs/qiime2-2022.8/bin/pplacer --out-dir /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_19 -j 1 -r /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_19/pplacer.backbone.kjgasb69.fasta -s /tmp/qiime2/lisou/data/e44b5e78-31e5-4a0f-9041-494bc3ca2df2/data/raxml-info.txt -t /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_19/pplacer.tree.k9s6b2ub.tre --groups 10 /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_19/pplacer.extended.2.hg8m6kst.fasta No error messages available [18:44:15] jobs.py (line 80): DEBUG: Starting pplacer Job with input: backbone_alignment_file:/tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_22/pplacer.backbone.la3mfuue.fasta, tree_file:/tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_22/pplacer.tree.ub3xrba5.tre, info_file:/tmp/qiime2/lisou/data/e44b5e78-31e5-4a0f-9041-494bc3ca2df2/data/raxml-info.txt, extended alignment:/tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_22/pplacer.extended.1.wl8w84ff.fasta, output:/tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_22/pplacer.extended.1.wl8w84ff.jplace [18:44:15] jobs.py (line 106): DEBUG: Invocation of /home/lisou/anaconda3/envs/qiime2-2022.8/bin/pplacer --out-dir /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_22 -j 1 -r /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_22/pplacer.backbone.la3mfuue.fasta -s /tmp/qiime2/lisou/data/e44b5e78-31e5-4a0f-9041-494bc3ca2df2/data/raxml-info.txt -t /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_22/pplacer.tree.ub3xrba5.tre --groups 10 /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_22/pplacer.extended.1.wl8w84ff.fasta [18:44:15] alignment.py (line 553): DEBUG: Reading sto extended alignment: /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_110/A_110_4/FC_110_4_0/hmmalign.results.asq1u5s6. [18:44:15] alignment.py (line 578): DEBUG: /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_110/A_110_4/FC_110_4_0/hmmalign.results.asq1u5s6 insertions: 0 [18:44:15] alignment.py (line 556): INFO: Merging extension sto file (/tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_110/A_110_4/FC_110_4_0/hmmalign.results.asq1u5s6) into base alignment (/tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_110/A_110_4/hmmbuild.input.xp6wlpyp.fasta). [18:44:15] alignment.py (line 727): DEBUG: Merging started ... [18:44:15] alignment.py (line 834): DEBUG: Merging finished ... [18:44:15] alignment.py (line 560): DEBUG: Finished merging extension sto file (/tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_110/A_110_4/FC_110_4_0/hmmalign.results.asq1u5s6) into base alignment (/tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_110/A_110_4/hmmbuild.input.xp6wlpyp.fasta). [18:44:15] alignment.py (line 615): DEBUG: Relabeling 1599 (1599) with 1599 labels. [18:44:15] exhaustive.py (line 182): DEBUG: Merging alignment subset into placement subset for chunk 0: A_110_4. [18:44:15] alignment.py (line 727): DEBUG: Merging started ... [18:44:15] alignment.py (line 834): DEBUG: Merging finished ... [18:44:15] problem.py (line 246): DEBUG: Reading /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_110/A_110_5/hmmbuild.input.xmoeioni.fasta [] and relabeling it based on 1614 orig column labels. [18:44:15] alignment.py (line 543): DEBUG: Reading base alignment: /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_110/A_110_5/hmmbuild.input.xmoeioni.fasta. Traceback (most recent call last): File "/home/lisou/anaconda3/envs/qiime2-2022.8/lib/python3.8/site-packages/sepp/jobs.py", line 150, in run raise JobError("\n".join([ sepp.scheduler.JobError: The following execution failed: /home/lisou/anaconda3/envs/qiime2-2022.8/bin/pplacer --out-dir /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_20 -j 1 -r /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_20/pplacer.backbone.io65sl78.fasta -s /tmp/qiime2/lisou/data/e44b5e78-31e5-4a0f-9041-494bc3ca2df2/data/raxml-info.txt -t /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_20/pplacer.tree.96qfn0x8.tre --groups 10 /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_20/pplacer.extended.2.buzrgnsw.fasta No error messages available [18:44:15] jobs.py (line 80): DEBUG: Starting pplacer Job with input: backbone_alignment_file:/tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_22/pplacer.backbone.2hscdgj_.fasta, tree_file:/tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_22/pplacer.tree.6zlznbkj.tre, info_file:/tmp/qiime2/lisou/data/e44b5e78-31e5-4a0f-9041-494bc3ca2df2/data/raxml-info.txt, extended alignment:/tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_22/pplacer.extended.2.5dep1rj6.fasta, output:/tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_22/pplacer.extended.2.5dep1rj6.jplace [18:44:15] jobs.py (line 106): DEBUG: Invocation of /home/lisou/anaconda3/envs/qiime2-2022.8/bin/pplacer --out-dir /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_22 -j 1 -r /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_22/pplacer.backbone.2hscdgj_.fasta -s /tmp/qiime2/lisou/data/e44b5e78-31e5-4a0f-9041-494bc3ca2df2/data/raxml-info.txt -t /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_22/pplacer.tree.6zlznbkj.tre --groups 10 /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_22/pplacer.extended.2.5dep1rj6.fasta [18:44:15] alignment.py (line 615): DEBUG: Relabeling 1614 (1614) with 1614 labels. [18:44:15] exhaustive.py (line 182): DEBUG: Merging alignment subset into placement subset for chunk 0: A_110_5. [18:44:15] alignment.py (line 727): DEBUG: Merging started ... Traceback (most recent call last): File "/home/lisou/anaconda3/envs/qiime2-2022.8/lib/python3.8/site-packages/sepp/jobs.py", line 150, in run raise JobError("\n".join([ sepp.scheduler.JobError: The following execution failed: /home/lisou/anaconda3/envs/qiime2-2022.8/bin/pplacer --out-dir /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_20 -j 1 -r /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_20/pplacer.backbone.wyvufk_9.fasta -s /tmp/qiime2/lisou/data/e44b5e78-31e5-4a0f-9041-494bc3ca2df2/data/raxml-info.txt -t /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_20/pplacer.tree.2wfouvlt.tre --groups 10 /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_20/pplacer.extended.1.hu8hzcpq.fasta No error messages available [18:44:15] jobs.py (line 80): DEBUG: Starting pplacer Job with input: backbone_alignment_file:/tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_22/pplacer.backbone.s3ebq4k0.fasta, tree_file:/tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_22/pplacer.tree.pluh_3b3.tre, info_file:/tmp/qiime2/lisou/data/e44b5e78-31e5-4a0f-9041-494bc3ca2df2/data/raxml-info.txt, extended alignment:/tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_22/pplacer.extended.3.z59eu3x7.fasta, output:/tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_22/pplacer.extended.3.z59eu3x7.jplace [18:44:15] jobs.py (line 106): DEBUG: Invocation of /home/lisou/anaconda3/envs/qiime2-2022.8/bin/pplacer --out-dir /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_22 -j 1 -r /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_22/pplacer.backbone.s3ebq4k0.fasta -s /tmp/qiime2/lisou/data/e44b5e78-31e5-4a0f-9041-494bc3ca2df2/data/raxml-info.txt -t /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_22/pplacer.tree.pluh_3b3.tre --groups 10 /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_22/pplacer.extended.3.z59eu3x7.fasta [18:44:15] alignment.py (line 834): DEBUG: Merging finished ... [18:44:15] problem.py (line 246): DEBUG: Reading /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_110/A_110_6/hmmbuild.input.j2fgdl0v.fasta [] and relabeling it based on 1711 orig column labels. [18:44:15] jobs.py (line 144): DEBUG: Finished pplacer Job with input: backbone_alignment_file:/tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_22/pplacer.backbone.ww_1gcri.fasta, tree_file:/tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_22/pplacer.tree.mippxatp.tre, info_file:/tmp/qiime2/lisou/data/e44b5e78-31e5-4a0f-9041-494bc3ca2df2/data/raxml-info.txt, extended alignment:/tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_22/pplacer.extended.0.v_qoew7u.fasta, output:/tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_22/pplacer.extended.0.v_qoew7u.jplace with: return code: -11 output: error: [18:44:15] alignment.py (line 543): DEBUG: Reading base alignment: /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_110/A_110_6/hmmbuild.input.j2fgdl0v.fasta. [18:44:15] jobs.py (line 144): DEBUG: Finished pplacer Job with input: backbone_alignment_file:/tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_22/pplacer.backbone.la3mfuue.fasta, tree_file:/tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_22/pplacer.tree.ub3xrba5.tre, info_file:/tmp/qiime2/lisou/data/e44b5e78-31e5-4a0f-9041-494bc3ca2df2/data/raxml-info.txt, extended alignment:/tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_22/pplacer.extended.1.wl8w84ff.fasta, output:/tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_22/pplacer.extended.1.wl8w84ff.jplace with: return code: -11 output: error: [18:44:15] alignment.py (line 615): DEBUG: Relabeling 1711 (1711) with 1711 labels. [18:44:15] exhaustive.py (line 182): DEBUG: Merging alignment subset into placement subset for chunk 0: A_110_6. [18:44:15] alignment.py (line 727): DEBUG: Merging started ... [18:44:15] jobs.py (line 144): DEBUG: Finished pplacer Job with input: backbone_alignment_file:/tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_22/pplacer.backbone.2hscdgj_.fasta, tree_file:/tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_22/pplacer.tree.6zlznbkj.tre, info_file:/tmp/qiime2/lisou/data/e44b5e78-31e5-4a0f-9041-494bc3ca2df2/data/raxml-info.txt, extended alignment:/tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_22/pplacer.extended.2.5dep1rj6.fasta, output:/tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_22/pplacer.extended.2.5dep1rj6.jplace with: return code: -11 output: error: [18:44:15] alignment.py (line 834): DEBUG: Merging finished ... [18:44:15] problem.py (line 246): DEBUG: Reading /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_110/A_110_0/hmmbuild.input.vdj82mt3.fasta [] and relabeling it based on 1591 orig column labels. [18:44:15] alignment.py (line 543): DEBUG: Reading base alignment: /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_110/A_110_0/hmmbuild.input.vdj82mt3.fasta. [18:44:15] alignment.py (line 615): DEBUG: Relabeling 1591 (1591) with 1591 labels. [18:44:15] exhaustive.py (line 182): DEBUG: Merging alignment subset into placement subset for chunk 1: A_110_0. [18:44:15] alignment.py (line 727): DEBUG: Merging started ... [18:44:15] jobs.py (line 144): DEBUG: Finished pplacer Job with input: backbone_alignment_file:/tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_22/pplacer.backbone.s3ebq4k0.fasta, tree_file:/tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_22/pplacer.tree.pluh_3b3.tre, info_file:/tmp/qiime2/lisou/data/e44b5e78-31e5-4a0f-9041-494bc3ca2df2/data/raxml-info.txt, extended alignment:/tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_22/pplacer.extended.3.z59eu3x7.fasta, output:/tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_22/pplacer.extended.3.z59eu3x7.jplace with: return code: -11 output: error: [18:44:15] alignment.py (line 834): DEBUG: Merging finished ... [18:44:15] problem.py (line 246): DEBUG: Reading /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_110/A_110_1/hmmbuild.input.vq6_1lxi.fasta ['/tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_110/A_110_1/FC_110_1_1/hmmalign.results.5yg301e8'] and relabeling it based on 1609 orig column labels. [18:44:15] alignment.py (line 543): DEBUG: Reading base alignment: /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_110/A_110_1/hmmbuild.input.vq6_1lxi.fasta. [18:44:15] alignment.py (line 553): DEBUG: Reading sto extended alignment: /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_110/A_110_1/FC_110_1_1/hmmalign.results.5yg301e8. [18:44:15] alignment.py (line 578): DEBUG: /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_110/A_110_1/FC_110_1_1/hmmalign.results.5yg301e8 insertions: 0 [18:44:15] alignment.py (line 556): INFO: Merging extension sto file (/tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_110/A_110_1/FC_110_1_1/hmmalign.results.5yg301e8) into base alignment (/tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_110/A_110_1/hmmbuild.input.vq6_1lxi.fasta). [18:44:15] alignment.py (line 727): DEBUG: Merging started ... [18:44:15] alignment.py (line 834): DEBUG: Merging finished ... [18:44:15] alignment.py (line 560): DEBUG: Finished merging extension sto file (/tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_110/A_110_1/FC_110_1_1/hmmalign.results.5yg301e8) into base alignment (/tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_110/A_110_1/hmmbuild.input.vq6_1lxi.fasta). [18:44:15] alignment.py (line 615): DEBUG: Relabeling 1609 (1609) with 1609 labels. [18:44:15] exhaustive.py (line 182): DEBUG: Merging alignment subset into placement subset for chunk 1: A_110_1. [18:44:15] alignment.py (line 727): DEBUG: Merging started ... [18:44:15] alignment.py (line 834): DEBUG: Merging finished ... [18:44:15] problem.py (line 246): DEBUG: Reading /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_110/A_110_2/hmmbuild.input.9en_98h0.fasta [] and relabeling it based on 1593 orig column labels. [18:44:15] alignment.py (line 543): DEBUG: Reading base alignment: /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_110/A_110_2/hmmbuild.input.9en_98h0.fasta. [18:44:15] alignment.py (line 615): DEBUG: Relabeling 1593 (1593) with 1593 labels. [18:44:15] exhaustive.py (line 182): DEBUG: Merging alignment subset into placement subset for chunk 1: A_110_2. [18:44:15] alignment.py (line 727): DEBUG: Merging started ... [18:44:15] alignment.py (line 834): DEBUG: Merging finished ... [18:44:15] problem.py (line 246): DEBUG: Reading /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_110/A_110_3/hmmbuild.input.ip1oyod9.fasta [] and relabeling it based on 1636 orig column labels. [18:44:15] alignment.py (line 543): DEBUG: Reading base alignment: /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_110/A_110_3/hmmbuild.input.ip1oyod9.fasta. [18:44:15] alignment.py (line 615): DEBUG: Relabeling 1636 (1636) with 1636 labels. [18:44:15] exhaustive.py (line 182): DEBUG: Merging alignment subset into placement subset for chunk 1: A_110_3. [18:44:15] alignment.py (line 727): DEBUG: Merging started ... [18:44:15] alignment.py (line 834): DEBUG: Merging finished ... [18:44:15] problem.py (line 246): DEBUG: Reading /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_110/A_110_4/hmmbuild.input.xp6wlpyp.fasta [] and relabeling it based on 1599 orig column labels. [18:44:15] alignment.py (line 543): DEBUG: Reading base alignment: /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_110/A_110_4/hmmbuild.input.xp6wlpyp.fasta. [18:44:15] alignment.py (line 615): DEBUG: Relabeling 1599 (1599) with 1599 labels. [18:44:15] exhaustive.py (line 182): DEBUG: Merging alignment subset into placement subset for chunk 1: A_110_4. [18:44:15] alignment.py (line 727): DEBUG: Merging started ... [18:44:15] alignment.py (line 834): DEBUG: Merging finished ... [18:44:15] problem.py (line 246): DEBUG: Reading /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_110/A_110_5/hmmbuild.input.xmoeioni.fasta [] and relabeling it based on 1614 orig column labels. [18:44:15] alignment.py (line 543): DEBUG: Reading base alignment: /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_110/A_110_5/hmmbuild.input.xmoeioni.fasta. [18:44:15] alignment.py (line 615): DEBUG: Relabeling 1614 (1614) with 1614 labels. [18:44:15] exhaustive.py (line 182): DEBUG: Merging alignment subset into placement subset for chunk 1: A_110_5. [18:44:15] alignment.py (line 727): DEBUG: Merging started ... [18:44:15] alignment.py (line 834): DEBUG: Merging finished ... [18:44:15] problem.py (line 246): DEBUG: Reading /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_110/A_110_6/hmmbuild.input.j2fgdl0v.fasta [] and relabeling it based on 1711 orig column labels. [18:44:15] alignment.py (line 543): DEBUG: Reading base alignment: /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_110/A_110_6/hmmbuild.input.j2fgdl0v.fasta. [18:44:15] alignment.py (line 615): DEBUG: Relabeling 1711 (1711) with 1711 labels. [18:44:15] exhaustive.py (line 182): DEBUG: Merging alignment subset into placement subset for chunk 1: A_110_6. [18:44:15] alignment.py (line 727): DEBUG: Merging started ... [18:44:15] alignment.py (line 834): DEBUG: Merging finished ... [18:44:15] problem.py (line 246): DEBUG: Reading /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_110/A_110_0/hmmbuild.input.vdj82mt3.fasta [] and relabeling it based on 1591 orig column labels. [18:44:15] alignment.py (line 543): DEBUG: Reading base alignment: /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_110/A_110_0/hmmbuild.input.vdj82mt3.fasta. [18:44:15] alignment.py (line 615): DEBUG: Relabeling 1591 (1591) with 1591 labels. [18:44:15] exhaustive.py (line 182): DEBUG: Merging alignment subset into placement subset for chunk 2: A_110_0. [18:44:15] alignment.py (line 727): DEBUG: Merging started ... [18:44:15] alignment.py (line 834): DEBUG: Merging finished ... [18:44:15] problem.py (line 246): DEBUG: Reading /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_110/A_110_1/hmmbuild.input.vq6_1lxi.fasta ['/tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_110/A_110_1/FC_110_1_2/hmmalign.results.n96gprsb'] and relabeling it based on 1609 orig column labels. [18:44:15] alignment.py (line 543): DEBUG: Reading base alignment: /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_110/A_110_1/hmmbuild.input.vq6_1lxi.fasta. [18:44:15] alignment.py (line 553): DEBUG: Reading sto extended alignment: /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_110/A_110_1/FC_110_1_2/hmmalign.results.n96gprsb. [18:44:15] alignment.py (line 578): DEBUG: /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_110/A_110_1/FC_110_1_2/hmmalign.results.n96gprsb insertions: 0 [18:44:15] alignment.py (line 556): INFO: Merging extension sto file (/tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_110/A_110_1/FC_110_1_2/hmmalign.results.n96gprsb) into base alignment (/tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_110/A_110_1/hmmbuild.input.vq6_1lxi.fasta). [18:44:15] alignment.py (line 727): DEBUG: Merging started ... [18:44:15] alignment.py (line 834): DEBUG: Merging finished ... [18:44:15] alignment.py (line 560): DEBUG: Finished merging extension sto file (/tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_110/A_110_1/FC_110_1_2/hmmalign.results.n96gprsb) into base alignment (/tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_110/A_110_1/hmmbuild.input.vq6_1lxi.fasta). [18:44:15] alignment.py (line 615): DEBUG: Relabeling 1609 (1609) with 1609 labels. [18:44:15] exhaustive.py (line 182): DEBUG: Merging alignment subset into placement subset for chunk 2: A_110_1. [18:44:15] alignment.py (line 727): DEBUG: Merging started ... [18:44:15] alignment.py (line 834): DEBUG: Merging finished ... [18:44:15] problem.py (line 246): DEBUG: Reading /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_110/A_110_2/hmmbuild.input.9en_98h0.fasta [] and relabeling it based on 1593 orig column labels. [18:44:15] alignment.py (line 543): DEBUG: Reading base alignment: /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_110/A_110_2/hmmbuild.input.9en_98h0.fasta. [18:44:15] alignment.py (line 615): DEBUG: Relabeling 1593 (1593) with 1593 labels. [18:44:15] exhaustive.py (line 182): DEBUG: Merging alignment subset into placement subset for chunk 2: A_110_2. [18:44:15] alignment.py (line 727): DEBUG: Merging started ... [18:44:15] alignment.py (line 834): DEBUG: Merging finished ... [18:44:15] problem.py (line 246): DEBUG: Reading /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_110/A_110_3/hmmbuild.input.ip1oyod9.fasta [] and relabeling it based on 1636 orig column labels. [18:44:15] alignment.py (line 543): DEBUG: Reading base alignment: /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_110/A_110_3/hmmbuild.input.ip1oyod9.fasta. [18:44:15] alignment.py (line 615): DEBUG: Relabeling 1636 (1636) with 1636 labels. [18:44:15] exhaustive.py (line 182): DEBUG: Merging alignment subset into placement subset for chunk 2: A_110_3. [18:44:15] alignment.py (line 727): DEBUG: Merging started ... [18:44:15] alignment.py (line 834): DEBUG: Merging finished ... [18:44:15] problem.py (line 246): DEBUG: Reading /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_110/A_110_4/hmmbuild.input.xp6wlpyp.fasta [] and relabeling it based on 1599 orig column labels. [18:44:15] alignment.py (line 543): DEBUG: Reading base alignment: /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_110/A_110_4/hmmbuild.input.xp6wlpyp.fasta. [18:44:15] alignment.py (line 615): DEBUG: Relabeling 1599 (1599) with 1599 labels. [18:44:15] exhaustive.py (line 182): DEBUG: Merging alignment subset into placement subset for chunk 2: A_110_4. [18:44:15] alignment.py (line 727): DEBUG: Merging started ... [18:44:15] alignment.py (line 834): DEBUG: Merging finished ... [18:44:15] problem.py (line 246): DEBUG: Reading /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_110/A_110_5/hmmbuild.input.xmoeioni.fasta [] and relabeling it based on 1614 orig column labels. [18:44:15] alignment.py (line 543): DEBUG: Reading base alignment: /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_110/A_110_5/hmmbuild.input.xmoeioni.fasta. [18:44:15] alignment.py (line 615): DEBUG: Relabeling 1614 (1614) with 1614 labels. [18:44:15] exhaustive.py (line 182): DEBUG: Merging alignment subset into placement subset for chunk 2: A_110_5. [18:44:15] alignment.py (line 727): DEBUG: Merging started ... [18:44:15] alignment.py (line 834): DEBUG: Merging finished ... [18:44:15] problem.py (line 246): DEBUG: Reading /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_110/A_110_6/hmmbuild.input.j2fgdl0v.fasta [] and relabeling it based on 1711 orig column labels. [18:44:15] alignment.py (line 543): DEBUG: Reading base alignment: /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_110/A_110_6/hmmbuild.input.j2fgdl0v.fasta. [18:44:15] alignment.py (line 615): DEBUG: Relabeling 1711 (1711) with 1711 labels. [18:44:15] exhaustive.py (line 182): DEBUG: Merging alignment subset into placement subset for chunk 2: A_110_6. [18:44:15] alignment.py (line 727): DEBUG: Merging started ... [18:44:15] alignment.py (line 834): DEBUG: Merging finished ... [18:44:15] problem.py (line 246): DEBUG: Reading /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_110/A_110_0/hmmbuild.input.vdj82mt3.fasta [] and relabeling it based on 1591 orig column labels. [18:44:15] alignment.py (line 543): DEBUG: Reading base alignment: /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_110/A_110_0/hmmbuild.input.vdj82mt3.fasta. [18:44:15] alignment.py (line 615): DEBUG: Relabeling 1591 (1591) with 1591 labels. [18:44:15] exhaustive.py (line 182): DEBUG: Merging alignment subset into placement subset for chunk 3: A_110_0. [18:44:15] alignment.py (line 727): DEBUG: Merging started ... [18:44:15] alignment.py (line 834): DEBUG: Merging finished ... [18:44:15] problem.py (line 246): DEBUG: Reading /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_110/A_110_1/hmmbuild.input.vq6_1lxi.fasta ['/tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_110/A_110_1/FC_110_1_3/hmmalign.results.d25d2e_t'] and relabeling it based on 1609 orig column labels. [18:44:15] alignment.py (line 543): DEBUG: Reading base alignment: /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_110/A_110_1/hmmbuild.input.vq6_1lxi.fasta. [18:44:15] alignment.py (line 553): DEBUG: Reading sto extended alignment: /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_110/A_110_1/FC_110_1_3/hmmalign.results.d25d2e_t. [18:44:15] alignment.py (line 578): DEBUG: /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_110/A_110_1/FC_110_1_3/hmmalign.results.d25d2e_t insertions: 0 [18:44:15] alignment.py (line 556): INFO: Merging extension sto file (/tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_110/A_110_1/FC_110_1_3/hmmalign.results.d25d2e_t) into base alignment (/tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_110/A_110_1/hmmbuild.input.vq6_1lxi.fasta). [18:44:15] alignment.py (line 727): DEBUG: Merging started ... [18:44:15] alignment.py (line 834): DEBUG: Merging finished ... [18:44:15] alignment.py (line 560): DEBUG: Finished merging extension sto file (/tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_110/A_110_1/FC_110_1_3/hmmalign.results.d25d2e_t) into base alignment (/tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_110/A_110_1/hmmbuild.input.vq6_1lxi.fasta). [18:44:15] alignment.py (line 615): DEBUG: Relabeling 1609 (1609) with 1609 labels. [18:44:15] exhaustive.py (line 182): DEBUG: Merging alignment subset into placement subset for chunk 3: A_110_1. [18:44:15] alignment.py (line 727): DEBUG: Merging started ... [18:44:15] alignment.py (line 834): DEBUG: Merging finished ... [18:44:15] problem.py (line 246): DEBUG: Reading /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_110/A_110_2/hmmbuild.input.9en_98h0.fasta [] and relabeling it based on 1593 orig column labels. [18:44:15] alignment.py (line 543): DEBUG: Reading base alignment: /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_110/A_110_2/hmmbuild.input.9en_98h0.fasta. [18:44:15] alignment.py (line 615): DEBUG: Relabeling 1593 (1593) with 1593 labels. [18:44:15] exhaustive.py (line 182): DEBUG: Merging alignment subset into placement subset for chunk 3: A_110_2. [18:44:15] alignment.py (line 727): DEBUG: Merging started ... [18:44:15] alignment.py (line 834): DEBUG: Merging finished ... [18:44:15] problem.py (line 246): DEBUG: Reading /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_110/A_110_3/hmmbuild.input.ip1oyod9.fasta [] and relabeling it based on 1636 orig column labels. [18:44:15] alignment.py (line 543): DEBUG: Reading base alignment: /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_110/A_110_3/hmmbuild.input.ip1oyod9.fasta. [18:44:15] alignment.py (line 615): DEBUG: Relabeling 1636 (1636) with 1636 labels. [18:44:15] exhaustive.py (line 182): DEBUG: Merging alignment subset into placement subset for chunk 3: A_110_3. [18:44:15] alignment.py (line 727): DEBUG: Merging started ... [18:44:15] alignment.py (line 834): DEBUG: Merging finished ... [18:44:15] problem.py (line 246): DEBUG: Reading /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_110/A_110_4/hmmbuild.input.xp6wlpyp.fasta [] and relabeling it based on 1599 orig column labels. [18:44:15] alignment.py (line 543): DEBUG: Reading base alignment: /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_110/A_110_4/hmmbuild.input.xp6wlpyp.fasta. [18:44:15] alignment.py (line 615): DEBUG: Relabeling 1599 (1599) with 1599 labels. [18:44:15] exhaustive.py (line 182): DEBUG: Merging alignment subset into placement subset for chunk 3: A_110_4. [18:44:15] alignment.py (line 727): DEBUG: Merging started ... [18:44:15] alignment.py (line 834): DEBUG: Merging finished ... [18:44:15] problem.py (line 246): DEBUG: Reading /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_110/A_110_5/hmmbuild.input.xmoeioni.fasta [] and relabeling it based on 1614 orig column labels. [18:44:15] alignment.py (line 543): DEBUG: Reading base alignment: /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_110/A_110_5/hmmbuild.input.xmoeioni.fasta. [18:44:15] alignment.py (line 615): DEBUG: Relabeling 1614 (1614) with 1614 labels. [18:44:15] exhaustive.py (line 182): DEBUG: Merging alignment subset into placement subset for chunk 3: A_110_5. [18:44:15] alignment.py (line 727): DEBUG: Merging started ... [18:44:15] alignment.py (line 834): DEBUG: Merging finished ... [18:44:15] problem.py (line 246): DEBUG: Reading /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_110/A_110_6/hmmbuild.input.j2fgdl0v.fasta [] and relabeling it based on 1711 orig column labels. [18:44:15] alignment.py (line 543): DEBUG: Reading base alignment: /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_110/A_110_6/hmmbuild.input.j2fgdl0v.fasta. [18:44:15] alignment.py (line 615): DEBUG: Relabeling 1711 (1711) with 1711 labels. [18:44:15] exhaustive.py (line 182): DEBUG: Merging alignment subset into placement subset for chunk 3: A_110_6. [18:44:15] alignment.py (line 727): DEBUG: Merging started ... [18:44:15] alignment.py (line 834): DEBUG: Merging finished ... [18:44:15] problem.py (line 246): DEBUG: Reading /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_110/A_110_0/hmmbuild.input.vdj82mt3.fasta [] and relabeling it based on 1591 orig column labels. [18:44:15] alignment.py (line 543): DEBUG: Reading base alignment: /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_110/A_110_0/hmmbuild.input.vdj82mt3.fasta. [18:44:15] alignment.py (line 615): DEBUG: Relabeling 1591 (1591) with 1591 labels. [18:44:15] exhaustive.py (line 182): DEBUG: Merging alignment subset into placement subset for chunk 4: A_110_0. [18:44:15] alignment.py (line 727): DEBUG: Merging started ... [18:44:15] alignment.py (line 834): DEBUG: Merging finished ... [18:44:15] problem.py (line 246): DEBUG: Reading /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_110/A_110_1/hmmbuild.input.vq6_1lxi.fasta ['/tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_110/A_110_1/FC_110_1_4/hmmalign.results.h3izzz01'] and relabeling it based on 1609 orig column labels. [18:44:15] alignment.py (line 543): DEBUG: Reading base alignment: /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_110/A_110_1/hmmbuild.input.vq6_1lxi.fasta. [18:44:15] alignment.py (line 553): DEBUG: Reading sto extended alignment: /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_110/A_110_1/FC_110_1_4/hmmalign.results.h3izzz01. [18:44:15] alignment.py (line 578): DEBUG: /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_110/A_110_1/FC_110_1_4/hmmalign.results.h3izzz01 insertions: 0 [18:44:15] alignment.py (line 556): INFO: Merging extension sto file (/tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_110/A_110_1/FC_110_1_4/hmmalign.results.h3izzz01) into base alignment (/tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_110/A_110_1/hmmbuild.input.vq6_1lxi.fasta). [18:44:15] alignment.py (line 727): DEBUG: Merging started ... [18:44:15] alignment.py (line 834): DEBUG: Merging finished ... [18:44:15] alignment.py (line 560): DEBUG: Finished merging extension sto file (/tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_110/A_110_1/FC_110_1_4/hmmalign.results.h3izzz01) into base alignment (/tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_110/A_110_1/hmmbuild.input.vq6_1lxi.fasta). [18:44:15] alignment.py (line 615): DEBUG: Relabeling 1609 (1609) with 1609 labels. [18:44:15] exhaustive.py (line 182): DEBUG: Merging alignment subset into placement subset for chunk 4: A_110_1. [18:44:15] alignment.py (line 727): DEBUG: Merging started ... [18:44:15] alignment.py (line 834): DEBUG: Merging finished ... [18:44:15] problem.py (line 246): DEBUG: Reading /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_110/A_110_2/hmmbuild.input.9en_98h0.fasta [] and relabeling it based on 1593 orig column labels. [18:44:15] alignment.py (line 543): DEBUG: Reading base alignment: /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_110/A_110_2/hmmbuild.input.9en_98h0.fasta. [18:44:15] alignment.py (line 615): DEBUG: Relabeling 1593 (1593) with 1593 labels. [18:44:15] exhaustive.py (line 182): DEBUG: Merging alignment subset into placement subset for chunk 4: A_110_2. [18:44:15] alignment.py (line 727): DEBUG: Merging started ... [18:44:15] alignment.py (line 834): DEBUG: Merging finished ... [18:44:15] problem.py (line 246): DEBUG: Reading /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_110/A_110_3/hmmbuild.input.ip1oyod9.fasta [] and relabeling it based on 1636 orig column labels. [18:44:15] alignment.py (line 543): DEBUG: Reading base alignment: /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_110/A_110_3/hmmbuild.input.ip1oyod9.fasta. [18:44:15] alignment.py (line 615): DEBUG: Relabeling 1636 (1636) with 1636 labels. [18:44:15] exhaustive.py (line 182): DEBUG: Merging alignment subset into placement subset for chunk 4: A_110_3. [18:44:15] alignment.py (line 727): DEBUG: Merging started ... [18:44:15] alignment.py (line 834): DEBUG: Merging finished ... [18:44:15] problem.py (line 246): DEBUG: Reading /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_110/A_110_4/hmmbuild.input.xp6wlpyp.fasta [] and relabeling it based on 1599 orig column labels. [18:44:15] alignment.py (line 543): DEBUG: Reading base alignment: /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_110/A_110_4/hmmbuild.input.xp6wlpyp.fasta. [18:44:15] alignment.py (line 615): DEBUG: Relabeling 1599 (1599) with 1599 labels. [18:44:15] exhaustive.py (line 182): DEBUG: Merging alignment subset into placement subset for chunk 4: A_110_4. [18:44:15] alignment.py (line 727): DEBUG: Merging started ... [18:44:15] alignment.py (line 834): DEBUG: Merging finished ... [18:44:15] problem.py (line 246): DEBUG: Reading /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_110/A_110_5/hmmbuild.input.xmoeioni.fasta [] and relabeling it based on 1614 orig column labels. [18:44:15] alignment.py (line 543): DEBUG: Reading base alignment: /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_110/A_110_5/hmmbuild.input.xmoeioni.fasta. [18:44:15] alignment.py (line 615): DEBUG: Relabeling 1614 (1614) with 1614 labels. [18:44:15] exhaustive.py (line 182): DEBUG: Merging alignment subset into placement subset for chunk 4: A_110_5. [18:44:15] alignment.py (line 727): DEBUG: Merging started ... [18:44:15] alignment.py (line 834): DEBUG: Merging finished ... [18:44:15] problem.py (line 246): DEBUG: Reading /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_110/A_110_6/hmmbuild.input.j2fgdl0v.fasta [] and relabeling it based on 1711 orig column labels. [18:44:15] alignment.py (line 543): DEBUG: Reading base alignment: /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_110/A_110_6/hmmbuild.input.j2fgdl0v.fasta. [18:44:15] alignment.py (line 615): DEBUG: Relabeling 1711 (1711) with 1711 labels. [18:44:15] exhaustive.py (line 182): DEBUG: Merging alignment subset into placement subset for chunk 4: A_110_6. [18:44:15] alignment.py (line 727): DEBUG: Merging started ... [18:44:15] alignment.py (line 834): DEBUG: Merging finished ... [18:44:15] problem.py (line 246): DEBUG: Reading /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_110/A_110_0/hmmbuild.input.vdj82mt3.fasta [] and relabeling it based on 1591 orig column labels. [18:44:15] alignment.py (line 543): DEBUG: Reading base alignment: /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_110/A_110_0/hmmbuild.input.vdj82mt3.fasta. [18:44:15] alignment.py (line 615): DEBUG: Relabeling 1591 (1591) with 1591 labels. [18:44:15] exhaustive.py (line 182): DEBUG: Merging alignment subset into placement subset for chunk 5: A_110_0. [18:44:15] alignment.py (line 727): DEBUG: Merging started ... [18:44:15] alignment.py (line 834): DEBUG: Merging finished ... [18:44:15] problem.py (line 246): DEBUG: Reading /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_110/A_110_1/hmmbuild.input.vq6_1lxi.fasta ['/tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_110/A_110_1/FC_110_1_5/hmmalign.results.ot33oluo'] and relabeling it based on 1609 orig column labels. [18:44:15] alignment.py (line 543): DEBUG: Reading base alignment: /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_110/A_110_1/hmmbuild.input.vq6_1lxi.fasta. [18:44:15] alignment.py (line 553): DEBUG: Reading sto extended alignment: /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_110/A_110_1/FC_110_1_5/hmmalign.results.ot33oluo. [18:44:15] alignment.py (line 578): DEBUG: /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_110/A_110_1/FC_110_1_5/hmmalign.results.ot33oluo insertions: 0 [18:44:15] alignment.py (line 556): INFO: Merging extension sto file (/tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_110/A_110_1/FC_110_1_5/hmmalign.results.ot33oluo) into base alignment (/tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_110/A_110_1/hmmbuild.input.vq6_1lxi.fasta). [18:44:15] alignment.py (line 727): DEBUG: Merging started ... [18:44:15] alignment.py (line 834): DEBUG: Merging finished ... [18:44:15] alignment.py (line 560): DEBUG: Finished merging extension sto file (/tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_110/A_110_1/FC_110_1_5/hmmalign.results.ot33oluo) into base alignment (/tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_110/A_110_1/hmmbuild.input.vq6_1lxi.fasta). [18:44:15] alignment.py (line 615): DEBUG: Relabeling 1609 (1609) with 1609 labels. [18:44:15] exhaustive.py (line 182): DEBUG: Merging alignment subset into placement subset for chunk 5: A_110_1. [18:44:15] alignment.py (line 727): DEBUG: Merging started ... [18:44:15] alignment.py (line 834): DEBUG: Merging finished ... [18:44:15] problem.py (line 246): DEBUG: Reading /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_110/A_110_2/hmmbuild.input.9en_98h0.fasta [] and relabeling it based on 1593 orig column labels. [18:44:15] alignment.py (line 543): DEBUG: Reading base alignment: /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_110/A_110_2/hmmbuild.input.9en_98h0.fasta. [18:44:15] alignment.py (line 615): DEBUG: Relabeling 1593 (1593) with 1593 labels. [18:44:15] exhaustive.py (line 182): DEBUG: Merging alignment subset into placement subset for chunk 5: A_110_2. [18:44:15] alignment.py (line 727): DEBUG: Merging started ... [18:44:15] alignment.py (line 834): DEBUG: Merging finished ... [18:44:15] problem.py (line 246): DEBUG: Reading /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_110/A_110_3/hmmbuild.input.ip1oyod9.fasta [] and relabeling it based on 1636 orig column labels. [18:44:15] alignment.py (line 543): DEBUG: Reading base alignment: /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_110/A_110_3/hmmbuild.input.ip1oyod9.fasta. [18:44:15] alignment.py (line 615): DEBUG: Relabeling 1636 (1636) with 1636 labels. [18:44:15] exhaustive.py (line 182): DEBUG: Merging alignment subset into placement subset for chunk 5: A_110_3. [18:44:15] alignment.py (line 727): DEBUG: Merging started ... [18:44:15] alignment.py (line 834): DEBUG: Merging finished ... [18:44:15] problem.py (line 246): DEBUG: Reading /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_110/A_110_4/hmmbuild.input.xp6wlpyp.fasta [] and relabeling it based on 1599 orig column labels. [18:44:15] alignment.py (line 543): DEBUG: Reading base alignment: /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_110/A_110_4/hmmbuild.input.xp6wlpyp.fasta. [18:44:15] alignment.py (line 615): DEBUG: Relabeling 1599 (1599) with 1599 labels. [18:44:15] exhaustive.py (line 182): DEBUG: Merging alignment subset into placement subset for chunk 5: A_110_4. [18:44:15] alignment.py (line 727): DEBUG: Merging started ... [18:44:15] alignment.py (line 834): DEBUG: Merging finished ... [18:44:15] problem.py (line 246): DEBUG: Reading /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_110/A_110_5/hmmbuild.input.xmoeioni.fasta [] and relabeling it based on 1614 orig column labels. [18:44:15] alignment.py (line 543): DEBUG: Reading base alignment: /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_110/A_110_5/hmmbuild.input.xmoeioni.fasta. [18:44:15] alignment.py (line 615): DEBUG: Relabeling 1614 (1614) with 1614 labels. [18:44:15] exhaustive.py (line 182): DEBUG: Merging alignment subset into placement subset for chunk 5: A_110_5. [18:44:15] alignment.py (line 727): DEBUG: Merging started ... [18:44:15] alignment.py (line 834): DEBUG: Merging finished ... [18:44:15] problem.py (line 246): DEBUG: Reading /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_110/A_110_6/hmmbuild.input.j2fgdl0v.fasta [] and relabeling it based on 1711 orig column labels. [18:44:15] alignment.py (line 543): DEBUG: Reading base alignment: /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_110/A_110_6/hmmbuild.input.j2fgdl0v.fasta. [18:44:15] alignment.py (line 615): DEBUG: Relabeling 1711 (1711) with 1711 labels. [18:44:15] exhaustive.py (line 182): DEBUG: Merging alignment subset into placement subset for chunk 5: A_110_6. [18:44:15] alignment.py (line 727): DEBUG: Merging started ... [18:44:15] alignment.py (line 834): DEBUG: Merging finished ... [18:44:15] problem.py (line 246): DEBUG: Reading /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_110/A_110_0/hmmbuild.input.vdj82mt3.fasta [] and relabeling it based on 1591 orig column labels. [18:44:15] alignment.py (line 543): DEBUG: Reading base alignment: /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_110/A_110_0/hmmbuild.input.vdj82mt3.fasta. [18:44:15] alignment.py (line 615): DEBUG: Relabeling 1591 (1591) with 1591 labels. [18:44:15] exhaustive.py (line 182): DEBUG: Merging alignment subset into placement subset for chunk 6: A_110_0. [18:44:15] alignment.py (line 727): DEBUG: Merging started ... [18:44:15] alignment.py (line 834): DEBUG: Merging finished ... [18:44:15] problem.py (line 246): DEBUG: Reading /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_110/A_110_1/hmmbuild.input.vq6_1lxi.fasta [] and relabeling it based on 1609 orig column labels. [18:44:15] alignment.py (line 543): DEBUG: Reading base alignment: /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_110/A_110_1/hmmbuild.input.vq6_1lxi.fasta. [18:44:15] alignment.py (line 615): DEBUG: Relabeling 1609 (1609) with 1609 labels. [18:44:15] exhaustive.py (line 182): DEBUG: Merging alignment subset into placement subset for chunk 6: A_110_1. [18:44:15] alignment.py (line 727): DEBUG: Merging started ... [18:44:15] alignment.py (line 834): DEBUG: Merging finished ... [18:44:15] problem.py (line 246): DEBUG: Reading /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_110/A_110_2/hmmbuild.input.9en_98h0.fasta [] and relabeling it based on 1593 orig column labels. [18:44:15] alignment.py (line 543): DEBUG: Reading base alignment: /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_110/A_110_2/hmmbuild.input.9en_98h0.fasta. [18:44:15] alignment.py (line 615): DEBUG: Relabeling 1593 (1593) with 1593 labels. [18:44:15] exhaustive.py (line 182): DEBUG: Merging alignment subset into placement subset for chunk 6: A_110_2. [18:44:15] alignment.py (line 727): DEBUG: Merging started ... [18:44:15] alignment.py (line 834): DEBUG: Merging finished ... [18:44:15] problem.py (line 246): DEBUG: Reading /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_110/A_110_3/hmmbuild.input.ip1oyod9.fasta [] and relabeling it based on 1636 orig column labels. [18:44:15] alignment.py (line 543): DEBUG: Reading base alignment: /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_110/A_110_3/hmmbuild.input.ip1oyod9.fasta. [18:44:15] alignment.py (line 615): DEBUG: Relabeling 1636 (1636) with 1636 labels. [18:44:15] exhaustive.py (line 182): DEBUG: Merging alignment subset into placement subset for chunk 6: A_110_3. [18:44:15] alignment.py (line 727): DEBUG: Merging started ... [18:44:15] alignment.py (line 834): DEBUG: Merging finished ... [18:44:15] problem.py (line 246): DEBUG: Reading /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_110/A_110_4/hmmbuild.input.xp6wlpyp.fasta [] and relabeling it based on 1599 orig column labels. [18:44:15] alignment.py (line 543): DEBUG: Reading base alignment: /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_110/A_110_4/hmmbuild.input.xp6wlpyp.fasta. [18:44:15] alignment.py (line 615): DEBUG: Relabeling 1599 (1599) with 1599 labels. [18:44:15] exhaustive.py (line 182): DEBUG: Merging alignment subset into placement subset for chunk 6: A_110_4. [18:44:15] alignment.py (line 727): DEBUG: Merging started ... [18:44:15] alignment.py (line 834): DEBUG: Merging finished ... [18:44:15] problem.py (line 246): DEBUG: Reading /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_110/A_110_5/hmmbuild.input.xmoeioni.fasta [] and relabeling it based on 1614 orig column labels. [18:44:15] alignment.py (line 543): DEBUG: Reading base alignment: /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_110/A_110_5/hmmbuild.input.xmoeioni.fasta. [18:44:15] alignment.py (line 615): DEBUG: Relabeling 1614 (1614) with 1614 labels. [18:44:15] exhaustive.py (line 182): DEBUG: Merging alignment subset into placement subset for chunk 6: A_110_5. [18:44:15] alignment.py (line 727): DEBUG: Merging started ... [18:44:15] alignment.py (line 834): DEBUG: Merging finished ... [18:44:15] problem.py (line 246): DEBUG: Reading /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_110/A_110_6/hmmbuild.input.j2fgdl0v.fasta [] and relabeling it based on 1711 orig column labels. [18:44:15] alignment.py (line 543): DEBUG: Reading base alignment: /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_110/A_110_6/hmmbuild.input.j2fgdl0v.fasta. [18:44:15] alignment.py (line 615): DEBUG: Relabeling 1711 (1711) with 1711 labels. [18:44:15] exhaustive.py (line 182): DEBUG: Merging alignment subset into placement subset for chunk 6: A_110_6. [18:44:15] alignment.py (line 727): DEBUG: Merging started ... [18:44:16] alignment.py (line 834): DEBUG: Merging finished ... [18:44:16] problem.py (line 246): DEBUG: Reading /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_110/A_110_0/hmmbuild.input.vdj82mt3.fasta [] and relabeling it based on 1591 orig column labels. [18:44:16] alignment.py (line 543): DEBUG: Reading base alignment: /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_110/A_110_0/hmmbuild.input.vdj82mt3.fasta. [18:44:16] alignment.py (line 615): DEBUG: Relabeling 1591 (1591) with 1591 labels. [18:44:16] exhaustive.py (line 182): DEBUG: Merging alignment subset into placement subset for chunk 7: A_110_0. [18:44:16] alignment.py (line 727): DEBUG: Merging started ... [18:44:16] alignment.py (line 834): DEBUG: Merging finished ... [18:44:16] problem.py (line 246): DEBUG: Reading /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_110/A_110_1/hmmbuild.input.vq6_1lxi.fasta [] and relabeling it based on 1609 orig column labels. [18:44:16] alignment.py (line 543): DEBUG: Reading base alignment: /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_110/A_110_1/hmmbuild.input.vq6_1lxi.fasta. [18:44:16] alignment.py (line 615): DEBUG: Relabeling 1609 (1609) with 1609 labels. [18:44:16] exhaustive.py (line 182): DEBUG: Merging alignment subset into placement subset for chunk 7: A_110_1. [18:44:16] alignment.py (line 727): DEBUG: Merging started ... [18:44:16] alignment.py (line 834): DEBUG: Merging finished ... [18:44:16] problem.py (line 246): DEBUG: Reading /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_110/A_110_2/hmmbuild.input.9en_98h0.fasta [] and relabeling it based on 1593 orig column labels. [18:44:16] alignment.py (line 543): DEBUG: Reading base alignment: /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_110/A_110_2/hmmbuild.input.9en_98h0.fasta. [18:44:16] alignment.py (line 615): DEBUG: Relabeling 1593 (1593) with 1593 labels. [18:44:16] exhaustive.py (line 182): DEBUG: Merging alignment subset into placement subset for chunk 7: A_110_2. [18:44:16] alignment.py (line 727): DEBUG: Merging started ... [18:44:16] alignment.py (line 834): DEBUG: Merging finished ... [18:44:16] problem.py (line 246): DEBUG: Reading /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_110/A_110_3/hmmbuild.input.ip1oyod9.fasta [] and relabeling it based on 1636 orig column labels. [18:44:16] alignment.py (line 543): DEBUG: Reading base alignment: /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_110/A_110_3/hmmbuild.input.ip1oyod9.fasta. [18:44:16] alignment.py (line 615): DEBUG: Relabeling 1636 (1636) with 1636 labels. [18:44:16] exhaustive.py (line 182): DEBUG: Merging alignment subset into placement subset for chunk 7: A_110_3. [18:44:16] alignment.py (line 727): DEBUG: Merging started ... [18:44:16] alignment.py (line 834): DEBUG: Merging finished ... [18:44:16] problem.py (line 246): DEBUG: Reading /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_110/A_110_4/hmmbuild.input.xp6wlpyp.fasta [] and relabeling it based on 1599 orig column labels. [18:44:16] alignment.py (line 543): DEBUG: Reading base alignment: /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_110/A_110_4/hmmbuild.input.xp6wlpyp.fasta. [18:44:16] alignment.py (line 615): DEBUG: Relabeling 1599 (1599) with 1599 labels. [18:44:16] exhaustive.py (line 182): DEBUG: Merging alignment subset into placement subset for chunk 7: A_110_4. [18:44:16] alignment.py (line 727): DEBUG: Merging started ... [18:44:16] alignment.py (line 834): DEBUG: Merging finished ... [18:44:16] problem.py (line 246): DEBUG: Reading /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_110/A_110_5/hmmbuild.input.xmoeioni.fasta [] and relabeling it based on 1614 orig column labels. [18:44:16] alignment.py (line 543): DEBUG: Reading base alignment: /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_110/A_110_5/hmmbuild.input.xmoeioni.fasta. [18:44:16] alignment.py (line 615): DEBUG: Relabeling 1614 (1614) with 1614 labels. [18:44:16] exhaustive.py (line 182): DEBUG: Merging alignment subset into placement subset for chunk 7: A_110_5. [18:44:16] alignment.py (line 727): DEBUG: Merging started ... [18:44:16] alignment.py (line 834): DEBUG: Merging finished ... [18:44:16] problem.py (line 246): DEBUG: Reading /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_110/A_110_6/hmmbuild.input.j2fgdl0v.fasta [] and relabeling it based on 1711 orig column labels. [18:44:16] alignment.py (line 543): DEBUG: Reading base alignment: /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_110/A_110_6/hmmbuild.input.j2fgdl0v.fasta. [18:44:16] alignment.py (line 615): DEBUG: Relabeling 1711 (1711) with 1711 labels. [18:44:16] exhaustive.py (line 182): DEBUG: Merging alignment subset into placement subset for chunk 7: A_110_6. [18:44:16] alignment.py (line 727): DEBUG: Merging started ... [18:44:16] alignment.py (line 834): DEBUG: Merging finished ... [18:44:16] alignment.py (line 203): DEBUG: Writing alignment of type with length 3 to file /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_110/pplacer.extended.0.mab5u_gk.fasta [18:44:16] alignment.py (line 203): DEBUG: Writing alignment of type with length 4066 to file /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_110/pplacer.backbone.74j06j_z.fasta [18:44:16] alignment.py (line 203): DEBUG: Writing alignment of type with length 1 to file /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_110/pplacer.extended.1.s7btl51s.fasta [18:44:16] alignment.py (line 203): DEBUG: Writing alignment of type with length 4066 to file /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_110/pplacer.backbone.1m7dgsml.fasta [18:44:16] alignment.py (line 203): DEBUG: Writing alignment of type with length 1 to file /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_110/pplacer.extended.2.1hcdg2__.fasta [18:44:16] alignment.py (line 203): DEBUG: Writing alignment of type with length 4066 to file /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_110/pplacer.backbone.u_zda3g5.fasta [18:44:16] alignment.py (line 203): DEBUG: Writing alignment of type with length 1 to file /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_110/pplacer.extended.3.wrxklk0t.fasta [18:44:16] alignment.py (line 203): DEBUG: Writing alignment of type with length 4066 to file /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_110/pplacer.backbone.00q1va8a.fasta [18:44:16] alignment.py (line 203): DEBUG: Writing alignment of type with length 1 to file /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_110/pplacer.extended.4.rgz_0p7w.fasta [18:44:16] alignment.py (line 203): DEBUG: Writing alignment of type with length 4066 to file /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_110/pplacer.backbone.vcndfz0b.fasta [18:44:16] alignment.py (line 203): DEBUG: Writing alignment of type with length 1 to file /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_110/pplacer.extended.5.iv9q7kpi.fasta [18:44:16] alignment.py (line 203): DEBUG: Writing alignment of type with length 4066 to file /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_110/pplacer.backbone.4l6r69qb.fasta [18:44:16] alignment.py (line 203): DEBUG: Writing alignment of type with length 0 to file /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_110/pplacer.extended.6.n50z5oq8.fasta [18:44:16] alignment.py (line 203): DEBUG: Writing alignment of type with length 4066 to file /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_110/pplacer.backbone.enm6ixmm.fasta [18:44:16] alignment.py (line 203): DEBUG: Writing alignment of type with length 0 to file /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_110/pplacer.extended.7.990my6jn.fasta [18:44:16] alignment.py (line 203): DEBUG: Writing alignment of type with length 4066 to file /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_110/pplacer.backbone.0a4zayx5.fasta [18:44:16] exhaustive.py (line 151): INFO: Merging sub-alignments for placement problem : P_109. [18:44:16] problem.py (line 246): DEBUG: Reading /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_109/A_109_0/hmmbuild.input.pwd81vos.fasta [] and relabeling it based on 1608 orig column labels. [18:44:16] alignment.py (line 543): DEBUG: Reading base alignment: /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_109/A_109_0/hmmbuild.input.pwd81vos.fasta. [18:44:16] alignment.py (line 615): DEBUG: Relabeling 1608 (1608) with 1608 labels. [18:44:16] exhaustive.py (line 182): DEBUG: Merging alignment subset into placement subset for chunk 0: A_109_0. [18:44:16] alignment.py (line 727): DEBUG: Merging started ... [18:44:16] alignment.py (line 834): DEBUG: Merging finished ... [18:44:16] problem.py (line 246): DEBUG: Reading /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_109/A_109_1/hmmbuild.input.w0w8tkiy.fasta ['/tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_109/A_109_1/FC_109_1_0/hmmalign.results.u9_2qkch'] and relabeling it based on 1610 orig column labels. [18:44:16] alignment.py (line 543): DEBUG: Reading base alignment: /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_109/A_109_1/hmmbuild.input.w0w8tkiy.fasta. [18:44:16] alignment.py (line 553): DEBUG: Reading sto extended alignment: /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_109/A_109_1/FC_109_1_0/hmmalign.results.u9_2qkch. [18:44:16] alignment.py (line 578): DEBUG: /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_109/A_109_1/FC_109_1_0/hmmalign.results.u9_2qkch insertions: 0 [18:44:16] alignment.py (line 556): INFO: Merging extension sto file (/tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_109/A_109_1/FC_109_1_0/hmmalign.results.u9_2qkch) into base alignment (/tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_109/A_109_1/hmmbuild.input.w0w8tkiy.fasta). [18:44:16] alignment.py (line 727): DEBUG: Merging started ... [18:44:16] alignment.py (line 834): DEBUG: Merging finished ... [18:44:16] alignment.py (line 560): DEBUG: Finished merging extension sto file (/tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_109/A_109_1/FC_109_1_0/hmmalign.results.u9_2qkch) into base alignment (/tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_109/A_109_1/hmmbuild.input.w0w8tkiy.fasta). [18:44:16] alignment.py (line 615): DEBUG: Relabeling 1610 (1610) with 1610 labels. [18:44:16] exhaustive.py (line 182): DEBUG: Merging alignment subset into placement subset for chunk 0: A_109_1. [18:44:16] alignment.py (line 727): DEBUG: Merging started ... [18:44:16] alignment.py (line 834): DEBUG: Merging finished ... [18:44:16] problem.py (line 246): DEBUG: Reading /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_109/A_109_2/hmmbuild.input.hcuilmnp.fasta ['/tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_109/A_109_2/FC_109_2_0/hmmalign.results.wqvs8ia_'] and relabeling it based on 1618 orig column labels. [18:44:16] alignment.py (line 543): DEBUG: Reading base alignment: /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_109/A_109_2/hmmbuild.input.hcuilmnp.fasta. [18:44:16] alignment.py (line 553): DEBUG: Reading sto extended alignment: /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_109/A_109_2/FC_109_2_0/hmmalign.results.wqvs8ia_. [18:44:16] alignment.py (line 578): DEBUG: /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_109/A_109_2/FC_109_2_0/hmmalign.results.wqvs8ia_ insertions: 0 [18:44:16] alignment.py (line 556): INFO: Merging extension sto file (/tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_109/A_109_2/FC_109_2_0/hmmalign.results.wqvs8ia_) into base alignment (/tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_109/A_109_2/hmmbuild.input.hcuilmnp.fasta). [18:44:16] alignment.py (line 727): DEBUG: Merging started ... [18:44:16] alignment.py (line 834): DEBUG: Merging finished ... [18:44:16] alignment.py (line 560): DEBUG: Finished merging extension sto file (/tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_109/A_109_2/FC_109_2_0/hmmalign.results.wqvs8ia_) into base alignment (/tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_109/A_109_2/hmmbuild.input.hcuilmnp.fasta). [18:44:16] alignment.py (line 615): DEBUG: Relabeling 1618 (1618) with 1618 labels. [18:44:16] exhaustive.py (line 182): DEBUG: Merging alignment subset into placement subset for chunk 0: A_109_2. [18:44:16] alignment.py (line 727): DEBUG: Merging started ... [18:44:16] alignment.py (line 834): DEBUG: Merging finished ... [18:44:16] problem.py (line 246): DEBUG: Reading /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_109/A_109_3/hmmbuild.input.q06vto3_.fasta ['/tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_109/A_109_3/FC_109_3_0/hmmalign.results.spd_tjwx'] and relabeling it based on 1641 orig column labels. [18:44:16] alignment.py (line 543): DEBUG: Reading base alignment: /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_109/A_109_3/hmmbuild.input.q06vto3_.fasta. [18:44:16] alignment.py (line 553): DEBUG: Reading sto extended alignment: /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_109/A_109_3/FC_109_3_0/hmmalign.results.spd_tjwx. [18:44:16] alignment.py (line 578): DEBUG: /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_109/A_109_3/FC_109_3_0/hmmalign.results.spd_tjwx insertions: 0 [18:44:16] alignment.py (line 556): INFO: Merging extension sto file (/tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_109/A_109_3/FC_109_3_0/hmmalign.results.spd_tjwx) into base alignment (/tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_109/A_109_3/hmmbuild.input.q06vto3_.fasta). [18:44:16] alignment.py (line 727): DEBUG: Merging started ... [18:44:16] alignment.py (line 834): DEBUG: Merging finished ... [18:44:16] alignment.py (line 560): DEBUG: Finished merging extension sto file (/tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_109/A_109_3/FC_109_3_0/hmmalign.results.spd_tjwx) into base alignment (/tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_109/A_109_3/hmmbuild.input.q06vto3_.fasta). [18:44:16] alignment.py (line 615): DEBUG: Relabeling 1641 (1641) with 1641 labels. [18:44:16] exhaustive.py (line 182): DEBUG: Merging alignment subset into placement subset for chunk 0: A_109_3. [18:44:16] alignment.py (line 727): DEBUG: Merging started ... [18:44:16] alignment.py (line 834): DEBUG: Merging finished ... [18:44:16] problem.py (line 246): DEBUG: Reading /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_109/A_109_0/hmmbuild.input.pwd81vos.fasta [] and relabeling it based on 1608 orig column labels. [18:44:16] alignment.py (line 543): DEBUG: Reading base alignment: /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_109/A_109_0/hmmbuild.input.pwd81vos.fasta. [18:44:16] alignment.py (line 615): DEBUG: Relabeling 1608 (1608) with 1608 labels. [18:44:16] exhaustive.py (line 182): DEBUG: Merging alignment subset into placement subset for chunk 1: A_109_0. [18:44:16] alignment.py (line 727): DEBUG: Merging started ... [18:44:16] alignment.py (line 834): DEBUG: Merging finished ... [18:44:16] problem.py (line 246): DEBUG: Reading /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_109/A_109_1/hmmbuild.input.w0w8tkiy.fasta ['/tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_109/A_109_1/FC_109_1_1/hmmalign.results._exb50ho'] and relabeling it based on 1610 orig column labels. [18:44:16] alignment.py (line 543): DEBUG: Reading base alignment: /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_109/A_109_1/hmmbuild.input.w0w8tkiy.fasta. [18:44:16] alignment.py (line 553): DEBUG: Reading sto extended alignment: /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_109/A_109_1/FC_109_1_1/hmmalign.results._exb50ho. [18:44:16] alignment.py (line 578): DEBUG: /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_109/A_109_1/FC_109_1_1/hmmalign.results._exb50ho insertions: 0 [18:44:16] alignment.py (line 556): INFO: Merging extension sto file (/tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_109/A_109_1/FC_109_1_1/hmmalign.results._exb50ho) into base alignment (/tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_109/A_109_1/hmmbuild.input.w0w8tkiy.fasta). [18:44:16] alignment.py (line 727): DEBUG: Merging started ... [18:44:16] alignment.py (line 834): DEBUG: Merging finished ... [18:44:16] alignment.py (line 560): DEBUG: Finished merging extension sto file (/tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_109/A_109_1/FC_109_1_1/hmmalign.results._exb50ho) into base alignment (/tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_109/A_109_1/hmmbuild.input.w0w8tkiy.fasta). [18:44:16] alignment.py (line 615): DEBUG: Relabeling 1610 (1610) with 1610 labels. [18:44:16] exhaustive.py (line 182): DEBUG: Merging alignment subset into placement subset for chunk 1: A_109_1. [18:44:16] alignment.py (line 727): DEBUG: Merging started ... [18:44:16] alignment.py (line 834): DEBUG: Merging finished ... [18:44:16] problem.py (line 246): DEBUG: Reading /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_109/A_109_2/hmmbuild.input.hcuilmnp.fasta [] and relabeling it based on 1618 orig column labels. [18:44:16] alignment.py (line 543): DEBUG: Reading base alignment: /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_109/A_109_2/hmmbuild.input.hcuilmnp.fasta. [18:44:16] alignment.py (line 615): DEBUG: Relabeling 1618 (1618) with 1618 labels. [18:44:16] exhaustive.py (line 182): DEBUG: Merging alignment subset into placement subset for chunk 1: A_109_2. [18:44:16] alignment.py (line 727): DEBUG: Merging started ... [18:44:16] alignment.py (line 834): DEBUG: Merging finished ... [18:44:16] problem.py (line 246): DEBUG: Reading /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_109/A_109_3/hmmbuild.input.q06vto3_.fasta ['/tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_109/A_109_3/FC_109_3_1/hmmalign.results.cqm89jsz'] and relabeling it based on 1641 orig column labels. [18:44:16] alignment.py (line 543): DEBUG: Reading base alignment: /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_109/A_109_3/hmmbuild.input.q06vto3_.fasta. [18:44:16] alignment.py (line 553): DEBUG: Reading sto extended alignment: /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_109/A_109_3/FC_109_3_1/hmmalign.results.cqm89jsz. [18:44:16] alignment.py (line 578): DEBUG: /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_109/A_109_3/FC_109_3_1/hmmalign.results.cqm89jsz insertions: 0 [18:44:16] alignment.py (line 556): INFO: Merging extension sto file (/tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_109/A_109_3/FC_109_3_1/hmmalign.results.cqm89jsz) into base alignment (/tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_109/A_109_3/hmmbuild.input.q06vto3_.fasta). [18:44:16] alignment.py (line 727): DEBUG: Merging started ... [18:44:16] alignment.py (line 834): DEBUG: Merging finished ... [18:44:16] alignment.py (line 560): DEBUG: Finished merging extension sto file (/tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_109/A_109_3/FC_109_3_1/hmmalign.results.cqm89jsz) into base alignment (/tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_109/A_109_3/hmmbuild.input.q06vto3_.fasta). [18:44:16] alignment.py (line 615): DEBUG: Relabeling 1641 (1641) with 1641 labels. [18:44:16] exhaustive.py (line 182): DEBUG: Merging alignment subset into placement subset for chunk 1: A_109_3. [18:44:16] alignment.py (line 727): DEBUG: Merging started ... [18:44:16] alignment.py (line 834): DEBUG: Merging finished ... [18:44:16] problem.py (line 246): DEBUG: Reading /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_109/A_109_0/hmmbuild.input.pwd81vos.fasta [] and relabeling it based on 1608 orig column labels. [18:44:16] alignment.py (line 543): DEBUG: Reading base alignment: /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_109/A_109_0/hmmbuild.input.pwd81vos.fasta. [18:44:16] alignment.py (line 615): DEBUG: Relabeling 1608 (1608) with 1608 labels. [18:44:16] exhaustive.py (line 182): DEBUG: Merging alignment subset into placement subset for chunk 2: A_109_0. [18:44:16] alignment.py (line 727): DEBUG: Merging started ... [18:44:16] alignment.py (line 834): DEBUG: Merging finished ... [18:44:16] problem.py (line 246): DEBUG: Reading /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_109/A_109_1/hmmbuild.input.w0w8tkiy.fasta ['/tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_109/A_109_1/FC_109_1_2/hmmalign.results.s1_deioz'] and relabeling it based on 1610 orig column labels. [18:44:16] alignment.py (line 543): DEBUG: Reading base alignment: /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_109/A_109_1/hmmbuild.input.w0w8tkiy.fasta. [18:44:16] alignment.py (line 553): DEBUG: Reading sto extended alignment: /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_109/A_109_1/FC_109_1_2/hmmalign.results.s1_deioz. [18:44:16] alignment.py (line 578): DEBUG: /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_109/A_109_1/FC_109_1_2/hmmalign.results.s1_deioz insertions: 0 [18:44:16] alignment.py (line 556): INFO: Merging extension sto file (/tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_109/A_109_1/FC_109_1_2/hmmalign.results.s1_deioz) into base alignment (/tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_109/A_109_1/hmmbuild.input.w0w8tkiy.fasta). [18:44:16] alignment.py (line 727): DEBUG: Merging started ... [18:44:16] alignment.py (line 834): DEBUG: Merging finished ... [18:44:16] alignment.py (line 560): DEBUG: Finished merging extension sto file (/tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_109/A_109_1/FC_109_1_2/hmmalign.results.s1_deioz) into base alignment (/tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_109/A_109_1/hmmbuild.input.w0w8tkiy.fasta). [18:44:16] alignment.py (line 615): DEBUG: Relabeling 1610 (1610) with 1610 labels. [18:44:16] exhaustive.py (line 182): DEBUG: Merging alignment subset into placement subset for chunk 2: A_109_1. [18:44:16] alignment.py (line 727): DEBUG: Merging started ... [18:44:16] alignment.py (line 834): DEBUG: Merging finished ... [18:44:16] problem.py (line 246): DEBUG: Reading /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_109/A_109_2/hmmbuild.input.hcuilmnp.fasta [] and relabeling it based on 1618 orig column labels. [18:44:16] alignment.py (line 543): DEBUG: Reading base alignment: /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_109/A_109_2/hmmbuild.input.hcuilmnp.fasta. [18:44:16] alignment.py (line 615): DEBUG: Relabeling 1618 (1618) with 1618 labels. [18:44:16] exhaustive.py (line 182): DEBUG: Merging alignment subset into placement subset for chunk 2: A_109_2. [18:44:16] alignment.py (line 727): DEBUG: Merging started ... [18:44:16] alignment.py (line 834): DEBUG: Merging finished ... [18:44:16] problem.py (line 246): DEBUG: Reading /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_109/A_109_3/hmmbuild.input.q06vto3_.fasta ['/tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_109/A_109_3/FC_109_3_2/hmmalign.results.pgmw4gu6'] and relabeling it based on 1641 orig column labels. [18:44:16] alignment.py (line 543): DEBUG: Reading base alignment: /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_109/A_109_3/hmmbuild.input.q06vto3_.fasta. [18:44:16] alignment.py (line 553): DEBUG: Reading sto extended alignment: /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_109/A_109_3/FC_109_3_2/hmmalign.results.pgmw4gu6. [18:44:16] alignment.py (line 578): DEBUG: /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_109/A_109_3/FC_109_3_2/hmmalign.results.pgmw4gu6 insertions: 0 [18:44:16] alignment.py (line 556): INFO: Merging extension sto file (/tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_109/A_109_3/FC_109_3_2/hmmalign.results.pgmw4gu6) into base alignment (/tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_109/A_109_3/hmmbuild.input.q06vto3_.fasta). [18:44:16] alignment.py (line 727): DEBUG: Merging started ... [18:44:16] alignment.py (line 834): DEBUG: Merging finished ... [18:44:16] alignment.py (line 560): DEBUG: Finished merging extension sto file (/tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_109/A_109_3/FC_109_3_2/hmmalign.results.pgmw4gu6) into base alignment (/tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_109/A_109_3/hmmbuild.input.q06vto3_.fasta). [18:44:16] alignment.py (line 615): DEBUG: Relabeling 1641 (1641) with 1641 labels. [18:44:16] exhaustive.py (line 182): DEBUG: Merging alignment subset into placement subset for chunk 2: A_109_3. [18:44:16] alignment.py (line 727): DEBUG: Merging started ... [18:44:16] alignment.py (line 834): DEBUG: Merging finished ... [18:44:16] problem.py (line 246): DEBUG: Reading /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_109/A_109_0/hmmbuild.input.pwd81vos.fasta [] and relabeling it based on 1608 orig column labels. [18:44:16] alignment.py (line 543): DEBUG: Reading base alignment: /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_109/A_109_0/hmmbuild.input.pwd81vos.fasta. [18:44:16] alignment.py (line 615): DEBUG: Relabeling 1608 (1608) with 1608 labels. [18:44:16] exhaustive.py (line 182): DEBUG: Merging alignment subset into placement subset for chunk 3: A_109_0. [18:44:16] alignment.py (line 727): DEBUG: Merging started ... [18:44:16] alignment.py (line 834): DEBUG: Merging finished ... [18:44:16] problem.py (line 246): DEBUG: Reading /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_109/A_109_1/hmmbuild.input.w0w8tkiy.fasta ['/tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_109/A_109_1/FC_109_1_3/hmmalign.results.alygjqf_'] and relabeling it based on 1610 orig column labels. [18:44:16] alignment.py (line 543): DEBUG: Reading base alignment: /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_109/A_109_1/hmmbuild.input.w0w8tkiy.fasta. [18:44:16] alignment.py (line 553): DEBUG: Reading sto extended alignment: /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_109/A_109_1/FC_109_1_3/hmmalign.results.alygjqf_. [18:44:16] alignment.py (line 578): DEBUG: /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_109/A_109_1/FC_109_1_3/hmmalign.results.alygjqf_ insertions: 0 [18:44:16] alignment.py (line 556): INFO: Merging extension sto file (/tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_109/A_109_1/FC_109_1_3/hmmalign.results.alygjqf_) into base alignment (/tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_109/A_109_1/hmmbuild.input.w0w8tkiy.fasta). [18:44:16] alignment.py (line 727): DEBUG: Merging started ... [18:44:16] alignment.py (line 834): DEBUG: Merging finished ... [18:44:16] alignment.py (line 560): DEBUG: Finished merging extension sto file (/tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_109/A_109_1/FC_109_1_3/hmmalign.results.alygjqf_) into base alignment (/tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_109/A_109_1/hmmbuild.input.w0w8tkiy.fasta). [18:44:16] alignment.py (line 615): DEBUG: Relabeling 1610 (1610) with 1610 labels. [18:44:16] exhaustive.py (line 182): DEBUG: Merging alignment subset into placement subset for chunk 3: A_109_1. [18:44:16] alignment.py (line 727): DEBUG: Merging started ... [18:44:16] alignment.py (line 834): DEBUG: Merging finished ... [18:44:16] problem.py (line 246): DEBUG: Reading /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_109/A_109_2/hmmbuild.input.hcuilmnp.fasta [] and relabeling it based on 1618 orig column labels. [18:44:16] alignment.py (line 543): DEBUG: Reading base alignment: /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_109/A_109_2/hmmbuild.input.hcuilmnp.fasta. [18:44:16] alignment.py (line 615): DEBUG: Relabeling 1618 (1618) with 1618 labels. [18:44:16] exhaustive.py (line 182): DEBUG: Merging alignment subset into placement subset for chunk 3: A_109_2. [18:44:16] alignment.py (line 727): DEBUG: Merging started ... [18:44:16] alignment.py (line 834): DEBUG: Merging finished ... [18:44:16] problem.py (line 246): DEBUG: Reading /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_109/A_109_3/hmmbuild.input.q06vto3_.fasta [] and relabeling it based on 1641 orig column labels. [18:44:16] alignment.py (line 543): DEBUG: Reading base alignment: /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_109/A_109_3/hmmbuild.input.q06vto3_.fasta. [18:44:16] alignment.py (line 615): DEBUG: Relabeling 1641 (1641) with 1641 labels. [18:44:16] exhaustive.py (line 182): DEBUG: Merging alignment subset into placement subset for chunk 3: A_109_3. [18:44:16] alignment.py (line 727): DEBUG: Merging started ... [18:44:16] alignment.py (line 834): DEBUG: Merging finished ... [18:44:16] problem.py (line 246): DEBUG: Reading /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_109/A_109_0/hmmbuild.input.pwd81vos.fasta [] and relabeling it based on 1608 orig column labels. [18:44:16] alignment.py (line 543): DEBUG: Reading base alignment: /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_109/A_109_0/hmmbuild.input.pwd81vos.fasta. [18:44:16] alignment.py (line 615): DEBUG: Relabeling 1608 (1608) with 1608 labels. [18:44:16] exhaustive.py (line 182): DEBUG: Merging alignment subset into placement subset for chunk 4: A_109_0. [18:44:16] alignment.py (line 727): DEBUG: Merging started ... [18:44:16] alignment.py (line 834): DEBUG: Merging finished ... [18:44:16] problem.py (line 246): DEBUG: Reading /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_109/A_109_1/hmmbuild.input.w0w8tkiy.fasta ['/tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_109/A_109_1/FC_109_1_4/hmmalign.results.le4go1lm'] and relabeling it based on 1610 orig column labels. [18:44:16] alignment.py (line 543): DEBUG: Reading base alignment: /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_109/A_109_1/hmmbuild.input.w0w8tkiy.fasta. [18:44:16] alignment.py (line 553): DEBUG: Reading sto extended alignment: /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_109/A_109_1/FC_109_1_4/hmmalign.results.le4go1lm. [18:44:16] alignment.py (line 578): DEBUG: /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_109/A_109_1/FC_109_1_4/hmmalign.results.le4go1lm insertions: 0 [18:44:16] alignment.py (line 556): INFO: Merging extension sto file (/tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_109/A_109_1/FC_109_1_4/hmmalign.results.le4go1lm) into base alignment (/tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_109/A_109_1/hmmbuild.input.w0w8tkiy.fasta). [18:44:16] alignment.py (line 727): DEBUG: Merging started ... [18:44:16] alignment.py (line 834): DEBUG: Merging finished ... [18:44:16] alignment.py (line 560): DEBUG: Finished merging extension sto file (/tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_109/A_109_1/FC_109_1_4/hmmalign.results.le4go1lm) into base alignment (/tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_109/A_109_1/hmmbuild.input.w0w8tkiy.fasta). [18:44:16] alignment.py (line 615): DEBUG: Relabeling 1610 (1610) with 1610 labels. [18:44:16] exhaustive.py (line 182): DEBUG: Merging alignment subset into placement subset for chunk 4: A_109_1. [18:44:16] alignment.py (line 727): DEBUG: Merging started ... [18:44:16] alignment.py (line 834): DEBUG: Merging finished ... [18:44:16] problem.py (line 246): DEBUG: Reading /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_109/A_109_2/hmmbuild.input.hcuilmnp.fasta [] and relabeling it based on 1618 orig column labels. [18:44:16] alignment.py (line 543): DEBUG: Reading base alignment: /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_109/A_109_2/hmmbuild.input.hcuilmnp.fasta. [18:44:16] alignment.py (line 615): DEBUG: Relabeling 1618 (1618) with 1618 labels. [18:44:16] exhaustive.py (line 182): DEBUG: Merging alignment subset into placement subset for chunk 4: A_109_2. [18:44:16] alignment.py (line 727): DEBUG: Merging started ... [18:44:16] alignment.py (line 834): DEBUG: Merging finished ... [18:44:16] problem.py (line 246): DEBUG: Reading /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_109/A_109_3/hmmbuild.input.q06vto3_.fasta [] and relabeling it based on 1641 orig column labels. [18:44:16] alignment.py (line 543): DEBUG: Reading base alignment: /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_109/A_109_3/hmmbuild.input.q06vto3_.fasta. [18:44:16] alignment.py (line 615): DEBUG: Relabeling 1641 (1641) with 1641 labels. [18:44:16] exhaustive.py (line 182): DEBUG: Merging alignment subset into placement subset for chunk 4: A_109_3. [18:44:16] alignment.py (line 727): DEBUG: Merging started ... [18:44:16] alignment.py (line 834): DEBUG: Merging finished ... [18:44:16] problem.py (line 246): DEBUG: Reading /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_109/A_109_0/hmmbuild.input.pwd81vos.fasta [] and relabeling it based on 1608 orig column labels. [18:44:16] alignment.py (line 543): DEBUG: Reading base alignment: /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_109/A_109_0/hmmbuild.input.pwd81vos.fasta. [18:44:16] alignment.py (line 615): DEBUG: Relabeling 1608 (1608) with 1608 labels. [18:44:16] exhaustive.py (line 182): DEBUG: Merging alignment subset into placement subset for chunk 5: A_109_0. [18:44:16] alignment.py (line 727): DEBUG: Merging started ... [18:44:16] alignment.py (line 834): DEBUG: Merging finished ... [18:44:16] problem.py (line 246): DEBUG: Reading /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_109/A_109_1/hmmbuild.input.w0w8tkiy.fasta ['/tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_109/A_109_1/FC_109_1_5/hmmalign.results.8ytaw924'] and relabeling it based on 1610 orig column labels. [18:44:16] alignment.py (line 543): DEBUG: Reading base alignment: /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_109/A_109_1/hmmbuild.input.w0w8tkiy.fasta. [18:44:16] alignment.py (line 553): DEBUG: Reading sto extended alignment: /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_109/A_109_1/FC_109_1_5/hmmalign.results.8ytaw924. [18:44:16] alignment.py (line 578): DEBUG: /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_109/A_109_1/FC_109_1_5/hmmalign.results.8ytaw924 insertions: 0 [18:44:16] alignment.py (line 556): INFO: Merging extension sto file (/tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_109/A_109_1/FC_109_1_5/hmmalign.results.8ytaw924) into base alignment (/tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_109/A_109_1/hmmbuild.input.w0w8tkiy.fasta). [18:44:16] alignment.py (line 727): DEBUG: Merging started ... [18:44:16] alignment.py (line 834): DEBUG: Merging finished ... [18:44:16] alignment.py (line 560): DEBUG: Finished merging extension sto file (/tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_109/A_109_1/FC_109_1_5/hmmalign.results.8ytaw924) into base alignment (/tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_109/A_109_1/hmmbuild.input.w0w8tkiy.fasta). [18:44:16] alignment.py (line 615): DEBUG: Relabeling 1610 (1610) with 1610 labels. [18:44:16] exhaustive.py (line 182): DEBUG: Merging alignment subset into placement subset for chunk 5: A_109_1. [18:44:16] alignment.py (line 727): DEBUG: Merging started ... [18:44:16] alignment.py (line 834): DEBUG: Merging finished ... [18:44:16] problem.py (line 246): DEBUG: Reading /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_109/A_109_2/hmmbuild.input.hcuilmnp.fasta [] and relabeling it based on 1618 orig column labels. [18:44:16] alignment.py (line 543): DEBUG: Reading base alignment: /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_109/A_109_2/hmmbuild.input.hcuilmnp.fasta. [18:44:16] alignment.py (line 615): DEBUG: Relabeling 1618 (1618) with 1618 labels. [18:44:16] exhaustive.py (line 182): DEBUG: Merging alignment subset into placement subset for chunk 5: A_109_2. [18:44:16] alignment.py (line 727): DEBUG: Merging started ... [18:44:16] alignment.py (line 834): DEBUG: Merging finished ... [18:44:16] problem.py (line 246): DEBUG: Reading /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_109/A_109_3/hmmbuild.input.q06vto3_.fasta [] and relabeling it based on 1641 orig column labels. [18:44:16] alignment.py (line 543): DEBUG: Reading base alignment: /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_109/A_109_3/hmmbuild.input.q06vto3_.fasta. [18:44:16] alignment.py (line 615): DEBUG: Relabeling 1641 (1641) with 1641 labels. [18:44:16] exhaustive.py (line 182): DEBUG: Merging alignment subset into placement subset for chunk 5: A_109_3. [18:44:16] alignment.py (line 727): DEBUG: Merging started ... [18:44:16] alignment.py (line 834): DEBUG: Merging finished ... [18:44:16] problem.py (line 246): DEBUG: Reading /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_109/A_109_0/hmmbuild.input.pwd81vos.fasta [] and relabeling it based on 1608 orig column labels. [18:44:16] alignment.py (line 543): DEBUG: Reading base alignment: /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_109/A_109_0/hmmbuild.input.pwd81vos.fasta. [18:44:16] alignment.py (line 615): DEBUG: Relabeling 1608 (1608) with 1608 labels. [18:44:16] exhaustive.py (line 182): DEBUG: Merging alignment subset into placement subset for chunk 6: A_109_0. [18:44:16] alignment.py (line 727): DEBUG: Merging started ... [18:44:16] alignment.py (line 834): DEBUG: Merging finished ... [18:44:16] problem.py (line 246): DEBUG: Reading /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_109/A_109_1/hmmbuild.input.w0w8tkiy.fasta [] and relabeling it based on 1610 orig column labels. [18:44:16] alignment.py (line 543): DEBUG: Reading base alignment: /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_109/A_109_1/hmmbuild.input.w0w8tkiy.fasta. [18:44:16] alignment.py (line 615): DEBUG: Relabeling 1610 (1610) with 1610 labels. [18:44:16] exhaustive.py (line 182): DEBUG: Merging alignment subset into placement subset for chunk 6: A_109_1. [18:44:16] alignment.py (line 727): DEBUG: Merging started ... [18:44:16] alignment.py (line 834): DEBUG: Merging finished ... [18:44:16] problem.py (line 246): DEBUG: Reading /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_109/A_109_2/hmmbuild.input.hcuilmnp.fasta [] and relabeling it based on 1618 orig column labels. [18:44:16] alignment.py (line 543): DEBUG: Reading base alignment: /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_109/A_109_2/hmmbuild.input.hcuilmnp.fasta. [18:44:16] alignment.py (line 615): DEBUG: Relabeling 1618 (1618) with 1618 labels. [18:44:16] exhaustive.py (line 182): DEBUG: Merging alignment subset into placement subset for chunk 6: A_109_2. [18:44:16] alignment.py (line 727): DEBUG: Merging started ... [18:44:16] alignment.py (line 834): DEBUG: Merging finished ... [18:44:16] problem.py (line 246): DEBUG: Reading /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_109/A_109_3/hmmbuild.input.q06vto3_.fasta [] and relabeling it based on 1641 orig column labels. [18:44:16] alignment.py (line 543): DEBUG: Reading base alignment: /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_109/A_109_3/hmmbuild.input.q06vto3_.fasta. [18:44:16] alignment.py (line 615): DEBUG: Relabeling 1641 (1641) with 1641 labels. [18:44:16] exhaustive.py (line 182): DEBUG: Merging alignment subset into placement subset for chunk 6: A_109_3. [18:44:16] alignment.py (line 727): DEBUG: Merging started ... [18:44:16] alignment.py (line 834): DEBUG: Merging finished ... [18:44:16] problem.py (line 246): DEBUG: Reading /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_109/A_109_0/hmmbuild.input.pwd81vos.fasta [] and relabeling it based on 1608 orig column labels. [18:44:16] alignment.py (line 543): DEBUG: Reading base alignment: /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_109/A_109_0/hmmbuild.input.pwd81vos.fasta. [18:44:16] alignment.py (line 615): DEBUG: Relabeling 1608 (1608) with 1608 labels. [18:44:16] exhaustive.py (line 182): DEBUG: Merging alignment subset into placement subset for chunk 7: A_109_0. [18:44:16] alignment.py (line 727): DEBUG: Merging started ... [18:44:16] alignment.py (line 834): DEBUG: Merging finished ... [18:44:16] problem.py (line 246): DEBUG: Reading /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_109/A_109_1/hmmbuild.input.w0w8tkiy.fasta [] and relabeling it based on 1610 orig column labels. [18:44:16] alignment.py (line 543): DEBUG: Reading base alignment: /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_109/A_109_1/hmmbuild.input.w0w8tkiy.fasta. [18:44:16] alignment.py (line 615): DEBUG: Relabeling 1610 (1610) with 1610 labels. [18:44:16] exhaustive.py (line 182): DEBUG: Merging alignment subset into placement subset for chunk 7: A_109_1. [18:44:16] alignment.py (line 727): DEBUG: Merging started ... [18:44:16] alignment.py (line 834): DEBUG: Merging finished ... [18:44:16] problem.py (line 246): DEBUG: Reading /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_109/A_109_2/hmmbuild.input.hcuilmnp.fasta [] and relabeling it based on 1618 orig column labels. [18:44:16] alignment.py (line 543): DEBUG: Reading base alignment: /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_109/A_109_2/hmmbuild.input.hcuilmnp.fasta. [18:44:16] alignment.py (line 615): DEBUG: Relabeling 1618 (1618) with 1618 labels. [18:44:16] exhaustive.py (line 182): DEBUG: Merging alignment subset into placement subset for chunk 7: A_109_2. [18:44:16] alignment.py (line 727): DEBUG: Merging started ... [18:44:16] alignment.py (line 834): DEBUG: Merging finished ... [18:44:16] problem.py (line 246): DEBUG: Reading /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_109/A_109_3/hmmbuild.input.q06vto3_.fasta [] and relabeling it based on 1641 orig column labels. [18:44:16] alignment.py (line 543): DEBUG: Reading base alignment: /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_109/A_109_3/hmmbuild.input.q06vto3_.fasta. [18:44:16] alignment.py (line 615): DEBUG: Relabeling 1641 (1641) with 1641 labels. [18:44:16] exhaustive.py (line 182): DEBUG: Merging alignment subset into placement subset for chunk 7: A_109_3. [18:44:16] alignment.py (line 727): DEBUG: Merging started ... [18:44:16] alignment.py (line 834): DEBUG: Merging finished ... [18:44:16] alignment.py (line 203): DEBUG: Writing alignment of type with length 3 to file /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_109/pplacer.extended.0.89t4t6dp.fasta [18:44:16] alignment.py (line 203): DEBUG: Writing alignment of type with length 2676 to file /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_109/pplacer.backbone.1dk3vsrn.fasta [18:44:16] alignment.py (line 203): DEBUG: Writing alignment of type with length 2 to file /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_109/pplacer.extended.1.tgp9mw0l.fasta [18:44:16] alignment.py (line 203): DEBUG: Writing alignment of type with length 2676 to file /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_109/pplacer.backbone.g341pzix.fasta [18:44:16] alignment.py (line 203): DEBUG: Writing alignment of type with length 2 to file /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_109/pplacer.extended.2._ig6fwl1.fasta [18:44:16] alignment.py (line 203): DEBUG: Writing alignment of type with length 2676 to file /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_109/pplacer.backbone.6gm4bcoa.fasta [18:44:16] alignment.py (line 203): DEBUG: Writing alignment of type with length 1 to file /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_109/pplacer.extended.3.ygxnga4p.fasta [18:44:16] alignment.py (line 203): DEBUG: Writing alignment of type with length 2676 to file /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_109/pplacer.backbone.11oinkt4.fasta [18:44:16] alignment.py (line 203): DEBUG: Writing alignment of type with length 1 to file /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_109/pplacer.extended.4.4rfrypv4.fasta [18:44:16] alignment.py (line 203): DEBUG: Writing alignment of type with length 2676 to file /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_109/pplacer.backbone.69_e_x50.fasta [18:44:16] alignment.py (line 203): DEBUG: Writing alignment of type with length 1 to file /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_109/pplacer.extended.5.97971257.fasta [18:44:16] alignment.py (line 203): DEBUG: Writing alignment of type with length 2676 to file /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_109/pplacer.backbone.x4hgbty_.fasta [18:44:16] alignment.py (line 203): DEBUG: Writing alignment of type with length 0 to file /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_109/pplacer.extended.6.vzjcvgya.fasta [18:44:16] alignment.py (line 203): DEBUG: Writing alignment of type with length 2676 to file /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_109/pplacer.backbone.5ebqocds.fasta [18:44:16] alignment.py (line 203): DEBUG: Writing alignment of type with length 0 to file /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_109/pplacer.extended.7.sd5dtseg.fasta [18:44:16] alignment.py (line 203): DEBUG: Writing alignment of type with length 2676 to file /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_109/pplacer.backbone.8uye_2zi.fasta [18:44:16] exhaustive.py (line 151): INFO: Merging sub-alignments for placement problem : P_112. [18:44:16] problem.py (line 246): DEBUG: Reading /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_112/A_112_0/hmmbuild.input.acf1m0g8.fasta [] and relabeling it based on 1669 orig column labels. [18:44:16] alignment.py (line 543): DEBUG: Reading base alignment: /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_112/A_112_0/hmmbuild.input.acf1m0g8.fasta. [18:44:16] alignment.py (line 615): DEBUG: Relabeling 1669 (1669) with 1669 labels. [18:44:16] exhaustive.py (line 182): DEBUG: Merging alignment subset into placement subset for chunk 0: A_112_0. [18:44:16] alignment.py (line 727): DEBUG: Merging started ... [18:44:16] alignment.py (line 834): DEBUG: Merging finished ... [18:44:16] problem.py (line 246): DEBUG: Reading /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_112/A_112_1/hmmbuild.input.pp36pd6o.fasta [] and relabeling it based on 1647 orig column labels. [18:44:16] alignment.py (line 543): DEBUG: Reading base alignment: /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_112/A_112_1/hmmbuild.input.pp36pd6o.fasta. [18:44:16] alignment.py (line 615): DEBUG: Relabeling 1647 (1647) with 1647 labels. [18:44:16] exhaustive.py (line 182): DEBUG: Merging alignment subset into placement subset for chunk 0: A_112_1. [18:44:16] alignment.py (line 727): DEBUG: Merging started ... [18:44:16] alignment.py (line 834): DEBUG: Merging finished ... [18:44:16] problem.py (line 246): DEBUG: Reading /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_112/A_112_2/hmmbuild.input.1pchzrew.fasta [] and relabeling it based on 1635 orig column labels. [18:44:16] alignment.py (line 543): DEBUG: Reading base alignment: /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_112/A_112_2/hmmbuild.input.1pchzrew.fasta. [18:44:16] alignment.py (line 615): DEBUG: Relabeling 1635 (1635) with 1635 labels. [18:44:16] exhaustive.py (line 182): DEBUG: Merging alignment subset into placement subset for chunk 0: A_112_2. [18:44:16] alignment.py (line 727): DEBUG: Merging started ... [18:44:16] alignment.py (line 834): DEBUG: Merging finished ... [18:44:16] problem.py (line 246): DEBUG: Reading /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_112/A_112_3/hmmbuild.input.qbol268x.fasta [] and relabeling it based on 1717 orig column labels. [18:44:16] alignment.py (line 543): DEBUG: Reading base alignment: /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_112/A_112_3/hmmbuild.input.qbol268x.fasta. [18:44:16] alignment.py (line 615): DEBUG: Relabeling 1717 (1717) with 1717 labels. [18:44:16] exhaustive.py (line 182): DEBUG: Merging alignment subset into placement subset for chunk 0: A_112_3. [18:44:16] alignment.py (line 727): DEBUG: Merging started ... [18:44:16] alignment.py (line 834): DEBUG: Merging finished ... [18:44:16] problem.py (line 246): DEBUG: Reading /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_112/A_112_0/hmmbuild.input.acf1m0g8.fasta [] and relabeling it based on 1669 orig column labels. [18:44:16] alignment.py (line 543): DEBUG: Reading base alignment: /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_112/A_112_0/hmmbuild.input.acf1m0g8.fasta. [18:44:16] alignment.py (line 615): DEBUG: Relabeling 1669 (1669) with 1669 labels. [18:44:16] exhaustive.py (line 182): DEBUG: Merging alignment subset into placement subset for chunk 1: A_112_0. [18:44:16] alignment.py (line 727): DEBUG: Merging started ... [18:44:16] alignment.py (line 834): DEBUG: Merging finished ... [18:44:16] problem.py (line 246): DEBUG: Reading /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_112/A_112_1/hmmbuild.input.pp36pd6o.fasta [] and relabeling it based on 1647 orig column labels. [18:44:16] alignment.py (line 543): DEBUG: Reading base alignment: /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_112/A_112_1/hmmbuild.input.pp36pd6o.fasta. [18:44:16] alignment.py (line 615): DEBUG: Relabeling 1647 (1647) with 1647 labels. [18:44:16] exhaustive.py (line 182): DEBUG: Merging alignment subset into placement subset for chunk 1: A_112_1. [18:44:16] alignment.py (line 727): DEBUG: Merging started ... [18:44:16] alignment.py (line 834): DEBUG: Merging finished ... [18:44:16] problem.py (line 246): DEBUG: Reading /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_112/A_112_2/hmmbuild.input.1pchzrew.fasta [] and relabeling it based on 1635 orig column labels. [18:44:16] alignment.py (line 543): DEBUG: Reading base alignment: /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_112/A_112_2/hmmbuild.input.1pchzrew.fasta. [18:44:16] alignment.py (line 615): DEBUG: Relabeling 1635 (1635) with 1635 labels. [18:44:16] exhaustive.py (line 182): DEBUG: Merging alignment subset into placement subset for chunk 1: A_112_2. [18:44:16] alignment.py (line 727): DEBUG: Merging started ... [18:44:16] alignment.py (line 834): DEBUG: Merging finished ... [18:44:16] problem.py (line 246): DEBUG: Reading /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_112/A_112_3/hmmbuild.input.qbol268x.fasta [] and relabeling it based on 1717 orig column labels. [18:44:16] alignment.py (line 543): DEBUG: Reading base alignment: /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_112/A_112_3/hmmbuild.input.qbol268x.fasta. [18:44:16] alignment.py (line 615): DEBUG: Relabeling 1717 (1717) with 1717 labels. [18:44:16] exhaustive.py (line 182): DEBUG: Merging alignment subset into placement subset for chunk 1: A_112_3. [18:44:16] alignment.py (line 727): DEBUG: Merging started ... [18:44:16] alignment.py (line 834): DEBUG: Merging finished ... [18:44:16] problem.py (line 246): DEBUG: Reading /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_112/A_112_0/hmmbuild.input.acf1m0g8.fasta [] and relabeling it based on 1669 orig column labels. [18:44:16] alignment.py (line 543): DEBUG: Reading base alignment: /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_112/A_112_0/hmmbuild.input.acf1m0g8.fasta. [18:44:16] alignment.py (line 615): DEBUG: Relabeling 1669 (1669) with 1669 labels. [18:44:16] exhaustive.py (line 182): DEBUG: Merging alignment subset into placement subset for chunk 2: A_112_0. [18:44:16] alignment.py (line 727): DEBUG: Merging started ... [18:44:16] alignment.py (line 834): DEBUG: Merging finished ... [18:44:16] problem.py (line 246): DEBUG: Reading /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_112/A_112_1/hmmbuild.input.pp36pd6o.fasta [] and relabeling it based on 1647 orig column labels. [18:44:16] alignment.py (line 543): DEBUG: Reading base alignment: /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_112/A_112_1/hmmbuild.input.pp36pd6o.fasta. [18:44:16] alignment.py (line 615): DEBUG: Relabeling 1647 (1647) with 1647 labels. [18:44:16] exhaustive.py (line 182): DEBUG: Merging alignment subset into placement subset for chunk 2: A_112_1. [18:44:16] alignment.py (line 727): DEBUG: Merging started ... [18:44:16] alignment.py (line 834): DEBUG: Merging finished ... [18:44:16] problem.py (line 246): DEBUG: Reading /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_112/A_112_2/hmmbuild.input.1pchzrew.fasta [] and relabeling it based on 1635 orig column labels. [18:44:16] alignment.py (line 543): DEBUG: Reading base alignment: /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_112/A_112_2/hmmbuild.input.1pchzrew.fasta. [18:44:16] alignment.py (line 615): DEBUG: Relabeling 1635 (1635) with 1635 labels. [18:44:16] exhaustive.py (line 182): DEBUG: Merging alignment subset into placement subset for chunk 2: A_112_2. [18:44:16] alignment.py (line 727): DEBUG: Merging started ... [18:44:16] alignment.py (line 834): DEBUG: Merging finished ... [18:44:16] problem.py (line 246): DEBUG: Reading /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_112/A_112_3/hmmbuild.input.qbol268x.fasta [] and relabeling it based on 1717 orig column labels. [18:44:16] alignment.py (line 543): DEBUG: Reading base alignment: /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_112/A_112_3/hmmbuild.input.qbol268x.fasta. [18:44:16] alignment.py (line 615): DEBUG: Relabeling 1717 (1717) with 1717 labels. [18:44:16] exhaustive.py (line 182): DEBUG: Merging alignment subset into placement subset for chunk 2: A_112_3. [18:44:16] alignment.py (line 727): DEBUG: Merging started ... [18:44:16] alignment.py (line 834): DEBUG: Merging finished ... [18:44:16] problem.py (line 246): DEBUG: Reading /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_112/A_112_0/hmmbuild.input.acf1m0g8.fasta [] and relabeling it based on 1669 orig column labels. [18:44:16] alignment.py (line 543): DEBUG: Reading base alignment: /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_112/A_112_0/hmmbuild.input.acf1m0g8.fasta. [18:44:16] alignment.py (line 615): DEBUG: Relabeling 1669 (1669) with 1669 labels. [18:44:16] exhaustive.py (line 182): DEBUG: Merging alignment subset into placement subset for chunk 3: A_112_0. [18:44:16] alignment.py (line 727): DEBUG: Merging started ... [18:44:16] alignment.py (line 834): DEBUG: Merging finished ... [18:44:16] problem.py (line 246): DEBUG: Reading /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_112/A_112_1/hmmbuild.input.pp36pd6o.fasta [] and relabeling it based on 1647 orig column labels. [18:44:16] alignment.py (line 543): DEBUG: Reading base alignment: /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_112/A_112_1/hmmbuild.input.pp36pd6o.fasta. [18:44:16] alignment.py (line 615): DEBUG: Relabeling 1647 (1647) with 1647 labels. [18:44:16] exhaustive.py (line 182): DEBUG: Merging alignment subset into placement subset for chunk 3: A_112_1. [18:44:16] alignment.py (line 727): DEBUG: Merging started ... [18:44:16] alignment.py (line 834): DEBUG: Merging finished ... [18:44:16] problem.py (line 246): DEBUG: Reading /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_112/A_112_2/hmmbuild.input.1pchzrew.fasta [] and relabeling it based on 1635 orig column labels. [18:44:16] alignment.py (line 543): DEBUG: Reading base alignment: /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_112/A_112_2/hmmbuild.input.1pchzrew.fasta. [18:44:16] alignment.py (line 615): DEBUG: Relabeling 1635 (1635) with 1635 labels. [18:44:16] exhaustive.py (line 182): DEBUG: Merging alignment subset into placement subset for chunk 3: A_112_2. [18:44:16] alignment.py (line 727): DEBUG: Merging started ... [18:44:16] alignment.py (line 834): DEBUG: Merging finished ... [18:44:16] problem.py (line 246): DEBUG: Reading /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_112/A_112_3/hmmbuild.input.qbol268x.fasta [] and relabeling it based on 1717 orig column labels. [18:44:16] alignment.py (line 543): DEBUG: Reading base alignment: /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_112/A_112_3/hmmbuild.input.qbol268x.fasta. [18:44:16] alignment.py (line 615): DEBUG: Relabeling 1717 (1717) with 1717 labels. [18:44:16] exhaustive.py (line 182): DEBUG: Merging alignment subset into placement subset for chunk 3: A_112_3. [18:44:16] alignment.py (line 727): DEBUG: Merging started ... [18:44:16] alignment.py (line 834): DEBUG: Merging finished ... [18:44:16] problem.py (line 246): DEBUG: Reading /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_112/A_112_0/hmmbuild.input.acf1m0g8.fasta [] and relabeling it based on 1669 orig column labels. [18:44:16] alignment.py (line 543): DEBUG: Reading base alignment: /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_112/A_112_0/hmmbuild.input.acf1m0g8.fasta. [18:44:16] alignment.py (line 615): DEBUG: Relabeling 1669 (1669) with 1669 labels. [18:44:16] exhaustive.py (line 182): DEBUG: Merging alignment subset into placement subset for chunk 4: A_112_0. [18:44:16] alignment.py (line 727): DEBUG: Merging started ... [18:44:16] alignment.py (line 834): DEBUG: Merging finished ... [18:44:16] problem.py (line 246): DEBUG: Reading /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_112/A_112_1/hmmbuild.input.pp36pd6o.fasta [] and relabeling it based on 1647 orig column labels. [18:44:16] alignment.py (line 543): DEBUG: Reading base alignment: /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_112/A_112_1/hmmbuild.input.pp36pd6o.fasta. [18:44:16] alignment.py (line 615): DEBUG: Relabeling 1647 (1647) with 1647 labels. [18:44:16] exhaustive.py (line 182): DEBUG: Merging alignment subset into placement subset for chunk 4: A_112_1. [18:44:16] alignment.py (line 727): DEBUG: Merging started ... [18:44:16] alignment.py (line 834): DEBUG: Merging finished ... [18:44:16] problem.py (line 246): DEBUG: Reading /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_112/A_112_2/hmmbuild.input.1pchzrew.fasta [] and relabeling it based on 1635 orig column labels. [18:44:16] alignment.py (line 543): DEBUG: Reading base alignment: /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_112/A_112_2/hmmbuild.input.1pchzrew.fasta. [18:44:16] alignment.py (line 615): DEBUG: Relabeling 1635 (1635) with 1635 labels. [18:44:16] exhaustive.py (line 182): DEBUG: Merging alignment subset into placement subset for chunk 4: A_112_2. [18:44:16] alignment.py (line 727): DEBUG: Merging started ... [18:44:16] alignment.py (line 834): DEBUG: Merging finished ... [18:44:16] problem.py (line 246): DEBUG: Reading /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_112/A_112_3/hmmbuild.input.qbol268x.fasta [] and relabeling it based on 1717 orig column labels. [18:44:16] alignment.py (line 543): DEBUG: Reading base alignment: /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_112/A_112_3/hmmbuild.input.qbol268x.fasta. [18:44:16] alignment.py (line 615): DEBUG: Relabeling 1717 (1717) with 1717 labels. [18:44:16] exhaustive.py (line 182): DEBUG: Merging alignment subset into placement subset for chunk 4: A_112_3. [18:44:16] alignment.py (line 727): DEBUG: Merging started ... [18:44:16] alignment.py (line 834): DEBUG: Merging finished ... [18:44:16] problem.py (line 246): DEBUG: Reading /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_112/A_112_0/hmmbuild.input.acf1m0g8.fasta [] and relabeling it based on 1669 orig column labels. [18:44:16] alignment.py (line 543): DEBUG: Reading base alignment: /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_112/A_112_0/hmmbuild.input.acf1m0g8.fasta. [18:44:16] alignment.py (line 615): DEBUG: Relabeling 1669 (1669) with 1669 labels. [18:44:16] exhaustive.py (line 182): DEBUG: Merging alignment subset into placement subset for chunk 5: A_112_0. [18:44:16] alignment.py (line 727): DEBUG: Merging started ... [18:44:16] alignment.py (line 834): DEBUG: Merging finished ... [18:44:16] problem.py (line 246): DEBUG: Reading /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_112/A_112_1/hmmbuild.input.pp36pd6o.fasta [] and relabeling it based on 1647 orig column labels. [18:44:16] alignment.py (line 543): DEBUG: Reading base alignment: /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_112/A_112_1/hmmbuild.input.pp36pd6o.fasta. [18:44:16] alignment.py (line 615): DEBUG: Relabeling 1647 (1647) with 1647 labels. [18:44:16] exhaustive.py (line 182): DEBUG: Merging alignment subset into placement subset for chunk 5: A_112_1. [18:44:16] alignment.py (line 727): DEBUG: Merging started ... [18:44:16] alignment.py (line 834): DEBUG: Merging finished ... [18:44:16] problem.py (line 246): DEBUG: Reading /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_112/A_112_2/hmmbuild.input.1pchzrew.fasta [] and relabeling it based on 1635 orig column labels. [18:44:16] alignment.py (line 543): DEBUG: Reading base alignment: /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_112/A_112_2/hmmbuild.input.1pchzrew.fasta. [18:44:16] alignment.py (line 615): DEBUG: Relabeling 1635 (1635) with 1635 labels. [18:44:16] exhaustive.py (line 182): DEBUG: Merging alignment subset into placement subset for chunk 5: A_112_2. [18:44:16] alignment.py (line 727): DEBUG: Merging started ... [18:44:16] alignment.py (line 834): DEBUG: Merging finished ... [18:44:16] problem.py (line 246): DEBUG: Reading /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_112/A_112_3/hmmbuild.input.qbol268x.fasta [] and relabeling it based on 1717 orig column labels. [18:44:16] alignment.py (line 543): DEBUG: Reading base alignment: /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_112/A_112_3/hmmbuild.input.qbol268x.fasta. [18:44:16] alignment.py (line 615): DEBUG: Relabeling 1717 (1717) with 1717 labels. [18:44:16] exhaustive.py (line 182): DEBUG: Merging alignment subset into placement subset for chunk 5: A_112_3. [18:44:16] alignment.py (line 727): DEBUG: Merging started ... [18:44:16] alignment.py (line 834): DEBUG: Merging finished ... [18:44:16] problem.py (line 246): DEBUG: Reading /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_112/A_112_0/hmmbuild.input.acf1m0g8.fasta [] and relabeling it based on 1669 orig column labels. [18:44:16] alignment.py (line 543): DEBUG: Reading base alignment: /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_112/A_112_0/hmmbuild.input.acf1m0g8.fasta. [18:44:16] alignment.py (line 615): DEBUG: Relabeling 1669 (1669) with 1669 labels. [18:44:16] exhaustive.py (line 182): DEBUG: Merging alignment subset into placement subset for chunk 6: A_112_0. [18:44:16] alignment.py (line 727): DEBUG: Merging started ... [18:44:16] alignment.py (line 834): DEBUG: Merging finished ... [18:44:16] problem.py (line 246): DEBUG: Reading /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_112/A_112_1/hmmbuild.input.pp36pd6o.fasta [] and relabeling it based on 1647 orig column labels. [18:44:16] alignment.py (line 543): DEBUG: Reading base alignment: /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_112/A_112_1/hmmbuild.input.pp36pd6o.fasta. [18:44:16] alignment.py (line 615): DEBUG: Relabeling 1647 (1647) with 1647 labels. [18:44:16] exhaustive.py (line 182): DEBUG: Merging alignment subset into placement subset for chunk 6: A_112_1. [18:44:16] alignment.py (line 727): DEBUG: Merging started ... [18:44:16] alignment.py (line 834): DEBUG: Merging finished ... [18:44:16] problem.py (line 246): DEBUG: Reading /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_112/A_112_2/hmmbuild.input.1pchzrew.fasta [] and relabeling it based on 1635 orig column labels. [18:44:16] alignment.py (line 543): DEBUG: Reading base alignment: /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_112/A_112_2/hmmbuild.input.1pchzrew.fasta. [18:44:16] alignment.py (line 615): DEBUG: Relabeling 1635 (1635) with 1635 labels. [18:44:16] exhaustive.py (line 182): DEBUG: Merging alignment subset into placement subset for chunk 6: A_112_2. [18:44:16] alignment.py (line 727): DEBUG: Merging started ... [18:44:16] alignment.py (line 834): DEBUG: Merging finished ... [18:44:16] problem.py (line 246): DEBUG: Reading /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_112/A_112_3/hmmbuild.input.qbol268x.fasta [] and relabeling it based on 1717 orig column labels. [18:44:16] alignment.py (line 543): DEBUG: Reading base alignment: /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_112/A_112_3/hmmbuild.input.qbol268x.fasta. [18:44:16] alignment.py (line 615): DEBUG: Relabeling 1717 (1717) with 1717 labels. [18:44:16] exhaustive.py (line 182): DEBUG: Merging alignment subset into placement subset for chunk 6: A_112_3. [18:44:16] alignment.py (line 727): DEBUG: Merging started ... [18:44:16] alignment.py (line 834): DEBUG: Merging finished ... [18:44:16] problem.py (line 246): DEBUG: Reading /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_112/A_112_0/hmmbuild.input.acf1m0g8.fasta [] and relabeling it based on 1669 orig column labels. [18:44:16] alignment.py (line 543): DEBUG: Reading base alignment: /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_112/A_112_0/hmmbuild.input.acf1m0g8.fasta. [18:44:16] alignment.py (line 615): DEBUG: Relabeling 1669 (1669) with 1669 labels. [18:44:16] exhaustive.py (line 182): DEBUG: Merging alignment subset into placement subset for chunk 7: A_112_0. [18:44:16] alignment.py (line 727): DEBUG: Merging started ... [18:44:16] alignment.py (line 834): DEBUG: Merging finished ... [18:44:16] problem.py (line 246): DEBUG: Reading /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_112/A_112_1/hmmbuild.input.pp36pd6o.fasta [] and relabeling it based on 1647 orig column labels. [18:44:16] alignment.py (line 543): DEBUG: Reading base alignment: /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_112/A_112_1/hmmbuild.input.pp36pd6o.fasta. [18:44:16] alignment.py (line 615): DEBUG: Relabeling 1647 (1647) with 1647 labels. [18:44:16] exhaustive.py (line 182): DEBUG: Merging alignment subset into placement subset for chunk 7: A_112_1. [18:44:16] alignment.py (line 727): DEBUG: Merging started ... [18:44:16] alignment.py (line 834): DEBUG: Merging finished ... [18:44:16] problem.py (line 246): DEBUG: Reading /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_112/A_112_2/hmmbuild.input.1pchzrew.fasta [] and relabeling it based on 1635 orig column labels. [18:44:16] alignment.py (line 543): DEBUG: Reading base alignment: /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_112/A_112_2/hmmbuild.input.1pchzrew.fasta. [18:44:17] alignment.py (line 615): DEBUG: Relabeling 1635 (1635) with 1635 labels. [18:44:17] exhaustive.py (line 182): DEBUG: Merging alignment subset into placement subset for chunk 7: A_112_2. [18:44:17] alignment.py (line 727): DEBUG: Merging started ... [18:44:17] alignment.py (line 834): DEBUG: Merging finished ... [18:44:17] problem.py (line 246): DEBUG: Reading /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_112/A_112_3/hmmbuild.input.qbol268x.fasta [] and relabeling it based on 1717 orig column labels. [18:44:17] alignment.py (line 543): DEBUG: Reading base alignment: /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_112/A_112_3/hmmbuild.input.qbol268x.fasta. [18:44:17] alignment.py (line 615): DEBUG: Relabeling 1717 (1717) with 1717 labels. [18:44:17] exhaustive.py (line 182): DEBUG: Merging alignment subset into placement subset for chunk 7: A_112_3. [18:44:17] alignment.py (line 727): DEBUG: Merging started ... [18:44:17] alignment.py (line 834): DEBUG: Merging finished ... [18:44:17] alignment.py (line 203): DEBUG: Writing alignment of type with length 0 to file /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_112/pplacer.extended.0.kwch05kk.fasta [18:44:17] alignment.py (line 203): DEBUG: Writing alignment of type with length 3010 to file /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_112/pplacer.backbone.5t7db04u.fasta [18:44:17] alignment.py (line 203): DEBUG: Writing alignment of type with length 0 to file /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_112/pplacer.extended.1.vug0bstv.fasta [18:44:17] alignment.py (line 203): DEBUG: Writing alignment of type with length 3010 to file /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_112/pplacer.backbone.v63fhgiw.fasta [18:44:17] alignment.py (line 203): DEBUG: Writing alignment of type with length 0 to file /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_112/pplacer.extended.2.admw1t86.fasta [18:44:17] alignment.py (line 203): DEBUG: Writing alignment of type with length 3010 to file /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_112/pplacer.backbone.gj18hol9.fasta [18:44:17] alignment.py (line 203): DEBUG: Writing alignment of type with length 0 to file /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_112/pplacer.extended.3.q2tsj5o_.fasta [18:44:17] alignment.py (line 203): DEBUG: Writing alignment of type with length 3010 to file /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_112/pplacer.backbone.iaqzsxcu.fasta [18:44:17] alignment.py (line 203): DEBUG: Writing alignment of type with length 0 to file /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_112/pplacer.extended.4.z7rlauhn.fasta [18:44:17] alignment.py (line 203): DEBUG: Writing alignment of type with length 3010 to file /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_112/pplacer.backbone.za71volg.fasta [18:44:17] alignment.py (line 203): DEBUG: Writing alignment of type with length 0 to file /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_112/pplacer.extended.5.z5rnaz1k.fasta [18:44:17] alignment.py (line 203): DEBUG: Writing alignment of type with length 3010 to file /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_112/pplacer.backbone.j7jxsvl5.fasta [18:44:17] alignment.py (line 203): DEBUG: Writing alignment of type with length 0 to file /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_112/pplacer.extended.6.jo462zjf.fasta [18:44:17] alignment.py (line 203): DEBUG: Writing alignment of type with length 3010 to file /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_112/pplacer.backbone.uqlq2qve.fasta [18:44:17] alignment.py (line 203): DEBUG: Writing alignment of type with length 0 to file /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_112/pplacer.extended.7.3xtnaw9g.fasta [18:44:17] alignment.py (line 203): DEBUG: Writing alignment of type with length 3010 to file /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_112/pplacer.backbone.p9niwrzc.fasta [18:44:17] exhaustive.py (line 151): INFO: Merging sub-alignments for placement problem : P_111. [18:44:17] problem.py (line 246): DEBUG: Reading /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_111/A_111_0/hmmbuild.input.q_4t6du8.fasta ['/tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_111/A_111_0/FC_111_0_0/hmmalign.results.y83t6r75'] and relabeling it based on 1627 orig column labels. [18:44:17] alignment.py (line 543): DEBUG: Reading base alignment: /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_111/A_111_0/hmmbuild.input.q_4t6du8.fasta. [18:44:17] alignment.py (line 553): DEBUG: Reading sto extended alignment: /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_111/A_111_0/FC_111_0_0/hmmalign.results.y83t6r75. [18:44:17] alignment.py (line 578): DEBUG: /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_111/A_111_0/FC_111_0_0/hmmalign.results.y83t6r75 insertions: 0 [18:44:17] alignment.py (line 556): INFO: Merging extension sto file (/tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_111/A_111_0/FC_111_0_0/hmmalign.results.y83t6r75) into base alignment (/tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_111/A_111_0/hmmbuild.input.q_4t6du8.fasta). [18:44:17] alignment.py (line 727): DEBUG: Merging started ... [18:44:17] alignment.py (line 834): DEBUG: Merging finished ... [18:44:17] alignment.py (line 560): DEBUG: Finished merging extension sto file (/tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_111/A_111_0/FC_111_0_0/hmmalign.results.y83t6r75) into base alignment (/tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_111/A_111_0/hmmbuild.input.q_4t6du8.fasta). [18:44:17] alignment.py (line 615): DEBUG: Relabeling 1627 (1627) with 1627 labels. [18:44:17] exhaustive.py (line 182): DEBUG: Merging alignment subset into placement subset for chunk 0: A_111_0. [18:44:17] alignment.py (line 727): DEBUG: Merging started ... [18:44:17] alignment.py (line 834): DEBUG: Merging finished ... [18:44:17] problem.py (line 246): DEBUG: Reading /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_111/A_111_1/hmmbuild.input.vastfh5l.fasta [] and relabeling it based on 1604 orig column labels. [18:44:17] alignment.py (line 543): DEBUG: Reading base alignment: /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_111/A_111_1/hmmbuild.input.vastfh5l.fasta. [18:44:17] alignment.py (line 615): DEBUG: Relabeling 1604 (1604) with 1604 labels. [18:44:17] exhaustive.py (line 182): DEBUG: Merging alignment subset into placement subset for chunk 0: A_111_1. [18:44:17] alignment.py (line 727): DEBUG: Merging started ... [18:44:17] alignment.py (line 834): DEBUG: Merging finished ... [18:44:17] problem.py (line 246): DEBUG: Reading /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_111/A_111_2/hmmbuild.input.es7zmpha.fasta ['/tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_111/A_111_2/FC_111_2_0/hmmalign.results._e2fgkt7'] and relabeling it based on 1601 orig column labels. [18:44:17] alignment.py (line 543): DEBUG: Reading base alignment: /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_111/A_111_2/hmmbuild.input.es7zmpha.fasta. [18:44:17] alignment.py (line 553): DEBUG: Reading sto extended alignment: /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_111/A_111_2/FC_111_2_0/hmmalign.results._e2fgkt7. [18:44:17] alignment.py (line 578): DEBUG: /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_111/A_111_2/FC_111_2_0/hmmalign.results._e2fgkt7 insertions: 0 [18:44:17] alignment.py (line 556): INFO: Merging extension sto file (/tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_111/A_111_2/FC_111_2_0/hmmalign.results._e2fgkt7) into base alignment (/tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_111/A_111_2/hmmbuild.input.es7zmpha.fasta). [18:44:17] alignment.py (line 727): DEBUG: Merging started ... [18:44:17] alignment.py (line 834): DEBUG: Merging finished ... [18:44:17] alignment.py (line 560): DEBUG: Finished merging extension sto file (/tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_111/A_111_2/FC_111_2_0/hmmalign.results._e2fgkt7) into base alignment (/tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_111/A_111_2/hmmbuild.input.es7zmpha.fasta). [18:44:17] alignment.py (line 615): DEBUG: Relabeling 1601 (1601) with 1601 labels. [18:44:17] exhaustive.py (line 182): DEBUG: Merging alignment subset into placement subset for chunk 0: A_111_2. [18:44:17] alignment.py (line 727): DEBUG: Merging started ... [18:44:17] alignment.py (line 834): DEBUG: Merging finished ... [18:44:17] problem.py (line 246): DEBUG: Reading /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_111/A_111_3/hmmbuild.input.o6297fsy.fasta ['/tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_111/A_111_3/FC_111_3_0/hmmalign.results.8u89nd8l'] and relabeling it based on 1589 orig column labels. [18:44:17] alignment.py (line 543): DEBUG: Reading base alignment: /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_111/A_111_3/hmmbuild.input.o6297fsy.fasta. [18:44:17] alignment.py (line 553): DEBUG: Reading sto extended alignment: /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_111/A_111_3/FC_111_3_0/hmmalign.results.8u89nd8l. [18:44:17] alignment.py (line 578): DEBUG: /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_111/A_111_3/FC_111_3_0/hmmalign.results.8u89nd8l insertions: 0 [18:44:17] alignment.py (line 556): INFO: Merging extension sto file (/tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_111/A_111_3/FC_111_3_0/hmmalign.results.8u89nd8l) into base alignment (/tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_111/A_111_3/hmmbuild.input.o6297fsy.fasta). [18:44:17] alignment.py (line 727): DEBUG: Merging started ... [18:44:17] alignment.py (line 834): DEBUG: Merging finished ... [18:44:17] alignment.py (line 560): DEBUG: Finished merging extension sto file (/tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_111/A_111_3/FC_111_3_0/hmmalign.results.8u89nd8l) into base alignment (/tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_111/A_111_3/hmmbuild.input.o6297fsy.fasta). [18:44:17] alignment.py (line 615): DEBUG: Relabeling 1589 (1589) with 1589 labels. [18:44:17] exhaustive.py (line 182): DEBUG: Merging alignment subset into placement subset for chunk 0: A_111_3. [18:44:17] alignment.py (line 727): DEBUG: Merging started ... [18:44:17] alignment.py (line 834): DEBUG: Merging finished ... [18:44:17] problem.py (line 246): DEBUG: Reading /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_111/A_111_4/hmmbuild.input.cok4natl.fasta [] and relabeling it based on 1617 orig column labels. [18:44:17] alignment.py (line 543): DEBUG: Reading base alignment: /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_111/A_111_4/hmmbuild.input.cok4natl.fasta. [18:44:17] alignment.py (line 615): DEBUG: Relabeling 1617 (1617) with 1617 labels. [18:44:17] exhaustive.py (line 182): DEBUG: Merging alignment subset into placement subset for chunk 0: A_111_4. [18:44:17] alignment.py (line 727): DEBUG: Merging started ... [18:44:17] alignment.py (line 834): DEBUG: Merging finished ... [18:44:17] problem.py (line 246): DEBUG: Reading /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_111/A_111_0/hmmbuild.input.q_4t6du8.fasta ['/tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_111/A_111_0/FC_111_0_1/hmmalign.results.6l94otsg'] and relabeling it based on 1627 orig column labels. [18:44:17] alignment.py (line 543): DEBUG: Reading base alignment: /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_111/A_111_0/hmmbuild.input.q_4t6du8.fasta. [18:44:17] alignment.py (line 553): DEBUG: Reading sto extended alignment: /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_111/A_111_0/FC_111_0_1/hmmalign.results.6l94otsg. [18:44:17] alignment.py (line 578): DEBUG: /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_111/A_111_0/FC_111_0_1/hmmalign.results.6l94otsg insertions: 0 [18:44:17] alignment.py (line 556): INFO: Merging extension sto file (/tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_111/A_111_0/FC_111_0_1/hmmalign.results.6l94otsg) into base alignment (/tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_111/A_111_0/hmmbuild.input.q_4t6du8.fasta). [18:44:17] alignment.py (line 727): DEBUG: Merging started ... [18:44:17] alignment.py (line 834): DEBUG: Merging finished ... [18:44:17] alignment.py (line 560): DEBUG: Finished merging extension sto file (/tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_111/A_111_0/FC_111_0_1/hmmalign.results.6l94otsg) into base alignment (/tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_111/A_111_0/hmmbuild.input.q_4t6du8.fasta). [18:44:17] alignment.py (line 615): DEBUG: Relabeling 1627 (1627) with 1627 labels. [18:44:17] exhaustive.py (line 182): DEBUG: Merging alignment subset into placement subset for chunk 1: A_111_0. [18:44:17] alignment.py (line 727): DEBUG: Merging started ... [18:44:17] alignment.py (line 834): DEBUG: Merging finished ... [18:44:17] problem.py (line 246): DEBUG: Reading /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_111/A_111_1/hmmbuild.input.vastfh5l.fasta [] and relabeling it based on 1604 orig column labels. [18:44:17] alignment.py (line 543): DEBUG: Reading base alignment: /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_111/A_111_1/hmmbuild.input.vastfh5l.fasta. [18:44:17] alignment.py (line 615): DEBUG: Relabeling 1604 (1604) with 1604 labels. [18:44:17] exhaustive.py (line 182): DEBUG: Merging alignment subset into placement subset for chunk 1: A_111_1. [18:44:17] alignment.py (line 727): DEBUG: Merging started ... [18:44:17] alignment.py (line 834): DEBUG: Merging finished ... [18:44:17] problem.py (line 246): DEBUG: Reading /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_111/A_111_2/hmmbuild.input.es7zmpha.fasta ['/tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_111/A_111_2/FC_111_2_1/hmmalign.results.7hb8zikk'] and relabeling it based on 1601 orig column labels. [18:44:17] alignment.py (line 543): DEBUG: Reading base alignment: /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_111/A_111_2/hmmbuild.input.es7zmpha.fasta. [18:44:17] alignment.py (line 553): DEBUG: Reading sto extended alignment: /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_111/A_111_2/FC_111_2_1/hmmalign.results.7hb8zikk. [18:44:17] alignment.py (line 578): DEBUG: /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_111/A_111_2/FC_111_2_1/hmmalign.results.7hb8zikk insertions: 0 [18:44:17] alignment.py (line 556): INFO: Merging extension sto file (/tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_111/A_111_2/FC_111_2_1/hmmalign.results.7hb8zikk) into base alignment (/tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_111/A_111_2/hmmbuild.input.es7zmpha.fasta). [18:44:17] alignment.py (line 727): DEBUG: Merging started ... [18:44:17] alignment.py (line 834): DEBUG: Merging finished ... [18:44:17] alignment.py (line 560): DEBUG: Finished merging extension sto file (/tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_111/A_111_2/FC_111_2_1/hmmalign.results.7hb8zikk) into base alignment (/tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_111/A_111_2/hmmbuild.input.es7zmpha.fasta). [18:44:17] alignment.py (line 615): DEBUG: Relabeling 1601 (1601) with 1601 labels. [18:44:17] exhaustive.py (line 182): DEBUG: Merging alignment subset into placement subset for chunk 1: A_111_2. [18:44:17] alignment.py (line 727): DEBUG: Merging started ... [18:44:17] alignment.py (line 834): DEBUG: Merging finished ... [18:44:17] problem.py (line 246): DEBUG: Reading /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_111/A_111_3/hmmbuild.input.o6297fsy.fasta [] and relabeling it based on 1589 orig column labels. [18:44:17] alignment.py (line 543): DEBUG: Reading base alignment: /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_111/A_111_3/hmmbuild.input.o6297fsy.fasta. [18:44:17] alignment.py (line 615): DEBUG: Relabeling 1589 (1589) with 1589 labels. [18:44:17] exhaustive.py (line 182): DEBUG: Merging alignment subset into placement subset for chunk 1: A_111_3. [18:44:17] alignment.py (line 727): DEBUG: Merging started ... [18:44:17] alignment.py (line 834): DEBUG: Merging finished ... [18:44:17] problem.py (line 246): DEBUG: Reading /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_111/A_111_4/hmmbuild.input.cok4natl.fasta [] and relabeling it based on 1617 orig column labels. [18:44:17] alignment.py (line 543): DEBUG: Reading base alignment: /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_111/A_111_4/hmmbuild.input.cok4natl.fasta. [18:44:17] alignment.py (line 615): DEBUG: Relabeling 1617 (1617) with 1617 labels. [18:44:17] exhaustive.py (line 182): DEBUG: Merging alignment subset into placement subset for chunk 1: A_111_4. [18:44:17] alignment.py (line 727): DEBUG: Merging started ... [18:44:17] alignment.py (line 834): DEBUG: Merging finished ... [18:44:17] problem.py (line 246): DEBUG: Reading /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_111/A_111_0/hmmbuild.input.q_4t6du8.fasta [] and relabeling it based on 1627 orig column labels. [18:44:17] alignment.py (line 543): DEBUG: Reading base alignment: /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_111/A_111_0/hmmbuild.input.q_4t6du8.fasta. [18:44:17] alignment.py (line 615): DEBUG: Relabeling 1627 (1627) with 1627 labels. [18:44:17] exhaustive.py (line 182): DEBUG: Merging alignment subset into placement subset for chunk 2: A_111_0. [18:44:17] alignment.py (line 727): DEBUG: Merging started ... [18:44:17] alignment.py (line 834): DEBUG: Merging finished ... [18:44:17] problem.py (line 246): DEBUG: Reading /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_111/A_111_1/hmmbuild.input.vastfh5l.fasta [] and relabeling it based on 1604 orig column labels. [18:44:17] alignment.py (line 543): DEBUG: Reading base alignment: /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_111/A_111_1/hmmbuild.input.vastfh5l.fasta. [18:44:17] alignment.py (line 615): DEBUG: Relabeling 1604 (1604) with 1604 labels. [18:44:17] exhaustive.py (line 182): DEBUG: Merging alignment subset into placement subset for chunk 2: A_111_1. [18:44:17] alignment.py (line 727): DEBUG: Merging started ... [18:44:17] alignment.py (line 834): DEBUG: Merging finished ... [18:44:17] problem.py (line 246): DEBUG: Reading /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_111/A_111_2/hmmbuild.input.es7zmpha.fasta ['/tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_111/A_111_2/FC_111_2_2/hmmalign.results.kkk3_d5z'] and relabeling it based on 1601 orig column labels. [18:44:17] alignment.py (line 543): DEBUG: Reading base alignment: /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_111/A_111_2/hmmbuild.input.es7zmpha.fasta. [18:44:17] alignment.py (line 553): DEBUG: Reading sto extended alignment: /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_111/A_111_2/FC_111_2_2/hmmalign.results.kkk3_d5z. [18:44:17] alignment.py (line 578): DEBUG: /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_111/A_111_2/FC_111_2_2/hmmalign.results.kkk3_d5z insertions: 0 [18:44:17] alignment.py (line 556): INFO: Merging extension sto file (/tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_111/A_111_2/FC_111_2_2/hmmalign.results.kkk3_d5z) into base alignment (/tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_111/A_111_2/hmmbuild.input.es7zmpha.fasta). [18:44:17] alignment.py (line 727): DEBUG: Merging started ... [18:44:17] alignment.py (line 834): DEBUG: Merging finished ... [18:44:17] alignment.py (line 560): DEBUG: Finished merging extension sto file (/tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_111/A_111_2/FC_111_2_2/hmmalign.results.kkk3_d5z) into base alignment (/tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_111/A_111_2/hmmbuild.input.es7zmpha.fasta). [18:44:17] alignment.py (line 615): DEBUG: Relabeling 1601 (1601) with 1601 labels. [18:44:17] exhaustive.py (line 182): DEBUG: Merging alignment subset into placement subset for chunk 2: A_111_2. [18:44:17] alignment.py (line 727): DEBUG: Merging started ... [18:44:17] alignment.py (line 834): DEBUG: Merging finished ... [18:44:17] problem.py (line 246): DEBUG: Reading /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_111/A_111_3/hmmbuild.input.o6297fsy.fasta [] and relabeling it based on 1589 orig column labels. [18:44:17] alignment.py (line 543): DEBUG: Reading base alignment: /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_111/A_111_3/hmmbuild.input.o6297fsy.fasta. [18:44:17] alignment.py (line 615): DEBUG: Relabeling 1589 (1589) with 1589 labels. [18:44:17] exhaustive.py (line 182): DEBUG: Merging alignment subset into placement subset for chunk 2: A_111_3. [18:44:17] alignment.py (line 727): DEBUG: Merging started ... [18:44:17] alignment.py (line 834): DEBUG: Merging finished ... [18:44:17] problem.py (line 246): DEBUG: Reading /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_111/A_111_4/hmmbuild.input.cok4natl.fasta [] and relabeling it based on 1617 orig column labels. [18:44:17] alignment.py (line 543): DEBUG: Reading base alignment: /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_111/A_111_4/hmmbuild.input.cok4natl.fasta. [18:44:17] alignment.py (line 615): DEBUG: Relabeling 1617 (1617) with 1617 labels. [18:44:17] exhaustive.py (line 182): DEBUG: Merging alignment subset into placement subset for chunk 2: A_111_4. [18:44:17] alignment.py (line 727): DEBUG: Merging started ... [18:44:17] alignment.py (line 834): DEBUG: Merging finished ... [18:44:17] problem.py (line 246): DEBUG: Reading /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_111/A_111_0/hmmbuild.input.q_4t6du8.fasta [] and relabeling it based on 1627 orig column labels. [18:44:17] alignment.py (line 543): DEBUG: Reading base alignment: /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_111/A_111_0/hmmbuild.input.q_4t6du8.fasta. [18:44:17] alignment.py (line 615): DEBUG: Relabeling 1627 (1627) with 1627 labels. [18:44:17] exhaustive.py (line 182): DEBUG: Merging alignment subset into placement subset for chunk 3: A_111_0. [18:44:17] alignment.py (line 727): DEBUG: Merging started ... [18:44:17] alignment.py (line 834): DEBUG: Merging finished ... [18:44:17] problem.py (line 246): DEBUG: Reading /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_111/A_111_1/hmmbuild.input.vastfh5l.fasta [] and relabeling it based on 1604 orig column labels. [18:44:17] alignment.py (line 543): DEBUG: Reading base alignment: /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_111/A_111_1/hmmbuild.input.vastfh5l.fasta. [18:44:17] alignment.py (line 615): DEBUG: Relabeling 1604 (1604) with 1604 labels. [18:44:17] exhaustive.py (line 182): DEBUG: Merging alignment subset into placement subset for chunk 3: A_111_1. [18:44:17] alignment.py (line 727): DEBUG: Merging started ... [18:44:17] alignment.py (line 834): DEBUG: Merging finished ... [18:44:17] problem.py (line 246): DEBUG: Reading /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_111/A_111_2/hmmbuild.input.es7zmpha.fasta ['/tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_111/A_111_2/FC_111_2_3/hmmalign.results.og3gg3_1'] and relabeling it based on 1601 orig column labels. [18:44:17] alignment.py (line 543): DEBUG: Reading base alignment: /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_111/A_111_2/hmmbuild.input.es7zmpha.fasta. [18:44:17] alignment.py (line 553): DEBUG: Reading sto extended alignment: /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_111/A_111_2/FC_111_2_3/hmmalign.results.og3gg3_1. [18:44:17] alignment.py (line 578): DEBUG: /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_111/A_111_2/FC_111_2_3/hmmalign.results.og3gg3_1 insertions: 0 [18:44:17] alignment.py (line 556): INFO: Merging extension sto file (/tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_111/A_111_2/FC_111_2_3/hmmalign.results.og3gg3_1) into base alignment (/tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_111/A_111_2/hmmbuild.input.es7zmpha.fasta). [18:44:17] alignment.py (line 727): DEBUG: Merging started ... [18:44:17] alignment.py (line 834): DEBUG: Merging finished ... [18:44:17] alignment.py (line 560): DEBUG: Finished merging extension sto file (/tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_111/A_111_2/FC_111_2_3/hmmalign.results.og3gg3_1) into base alignment (/tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_111/A_111_2/hmmbuild.input.es7zmpha.fasta). [18:44:17] alignment.py (line 615): DEBUG: Relabeling 1601 (1601) with 1601 labels. [18:44:17] exhaustive.py (line 182): DEBUG: Merging alignment subset into placement subset for chunk 3: A_111_2. [18:44:17] alignment.py (line 727): DEBUG: Merging started ... [18:44:17] alignment.py (line 834): DEBUG: Merging finished ... [18:44:17] problem.py (line 246): DEBUG: Reading /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_111/A_111_3/hmmbuild.input.o6297fsy.fasta [] and relabeling it based on 1589 orig column labels. [18:44:17] alignment.py (line 543): DEBUG: Reading base alignment: /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_111/A_111_3/hmmbuild.input.o6297fsy.fasta. [18:44:17] alignment.py (line 615): DEBUG: Relabeling 1589 (1589) with 1589 labels. [18:44:17] exhaustive.py (line 182): DEBUG: Merging alignment subset into placement subset for chunk 3: A_111_3. [18:44:17] alignment.py (line 727): DEBUG: Merging started ... [18:44:17] alignment.py (line 834): DEBUG: Merging finished ... [18:44:17] problem.py (line 246): DEBUG: Reading /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_111/A_111_4/hmmbuild.input.cok4natl.fasta [] and relabeling it based on 1617 orig column labels. [18:44:17] alignment.py (line 543): DEBUG: Reading base alignment: /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_111/A_111_4/hmmbuild.input.cok4natl.fasta. [18:44:17] alignment.py (line 615): DEBUG: Relabeling 1617 (1617) with 1617 labels. [18:44:17] exhaustive.py (line 182): DEBUG: Merging alignment subset into placement subset for chunk 3: A_111_4. [18:44:17] alignment.py (line 727): DEBUG: Merging started ... [18:44:17] alignment.py (line 834): DEBUG: Merging finished ... [18:44:17] problem.py (line 246): DEBUG: Reading /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_111/A_111_0/hmmbuild.input.q_4t6du8.fasta [] and relabeling it based on 1627 orig column labels. [18:44:17] alignment.py (line 543): DEBUG: Reading base alignment: /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_111/A_111_0/hmmbuild.input.q_4t6du8.fasta. [18:44:17] alignment.py (line 615): DEBUG: Relabeling 1627 (1627) with 1627 labels. [18:44:17] exhaustive.py (line 182): DEBUG: Merging alignment subset into placement subset for chunk 4: A_111_0. [18:44:17] alignment.py (line 727): DEBUG: Merging started ... [18:44:17] alignment.py (line 834): DEBUG: Merging finished ... [18:44:17] problem.py (line 246): DEBUG: Reading /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_111/A_111_1/hmmbuild.input.vastfh5l.fasta [] and relabeling it based on 1604 orig column labels. [18:44:17] alignment.py (line 543): DEBUG: Reading base alignment: /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_111/A_111_1/hmmbuild.input.vastfh5l.fasta. [18:44:17] alignment.py (line 615): DEBUG: Relabeling 1604 (1604) with 1604 labels. [18:44:17] exhaustive.py (line 182): DEBUG: Merging alignment subset into placement subset for chunk 4: A_111_1. [18:44:17] alignment.py (line 727): DEBUG: Merging started ... [18:44:17] alignment.py (line 834): DEBUG: Merging finished ... [18:44:17] problem.py (line 246): DEBUG: Reading /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_111/A_111_2/hmmbuild.input.es7zmpha.fasta ['/tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_111/A_111_2/FC_111_2_4/hmmalign.results.ol0b59qj'] and relabeling it based on 1601 orig column labels. [18:44:17] alignment.py (line 543): DEBUG: Reading base alignment: /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_111/A_111_2/hmmbuild.input.es7zmpha.fasta. [18:44:17] alignment.py (line 553): DEBUG: Reading sto extended alignment: /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_111/A_111_2/FC_111_2_4/hmmalign.results.ol0b59qj. [18:44:17] alignment.py (line 578): DEBUG: /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_111/A_111_2/FC_111_2_4/hmmalign.results.ol0b59qj insertions: 0 [18:44:17] alignment.py (line 556): INFO: Merging extension sto file (/tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_111/A_111_2/FC_111_2_4/hmmalign.results.ol0b59qj) into base alignment (/tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_111/A_111_2/hmmbuild.input.es7zmpha.fasta). [18:44:17] alignment.py (line 727): DEBUG: Merging started ... [18:44:17] alignment.py (line 834): DEBUG: Merging finished ... [18:44:17] alignment.py (line 560): DEBUG: Finished merging extension sto file (/tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_111/A_111_2/FC_111_2_4/hmmalign.results.ol0b59qj) into base alignment (/tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_111/A_111_2/hmmbuild.input.es7zmpha.fasta). [18:44:17] alignment.py (line 615): DEBUG: Relabeling 1601 (1601) with 1601 labels. [18:44:17] exhaustive.py (line 182): DEBUG: Merging alignment subset into placement subset for chunk 4: A_111_2. [18:44:17] alignment.py (line 727): DEBUG: Merging started ... [18:44:17] alignment.py (line 834): DEBUG: Merging finished ... [18:44:17] problem.py (line 246): DEBUG: Reading /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_111/A_111_3/hmmbuild.input.o6297fsy.fasta [] and relabeling it based on 1589 orig column labels. [18:44:17] alignment.py (line 543): DEBUG: Reading base alignment: /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_111/A_111_3/hmmbuild.input.o6297fsy.fasta. [18:44:17] alignment.py (line 615): DEBUG: Relabeling 1589 (1589) with 1589 labels. [18:44:17] exhaustive.py (line 182): DEBUG: Merging alignment subset into placement subset for chunk 4: A_111_3. [18:44:17] alignment.py (line 727): DEBUG: Merging started ... [18:44:17] alignment.py (line 834): DEBUG: Merging finished ... [18:44:17] problem.py (line 246): DEBUG: Reading /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_111/A_111_4/hmmbuild.input.cok4natl.fasta [] and relabeling it based on 1617 orig column labels. [18:44:17] alignment.py (line 543): DEBUG: Reading base alignment: /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_111/A_111_4/hmmbuild.input.cok4natl.fasta. [18:44:17] alignment.py (line 615): DEBUG: Relabeling 1617 (1617) with 1617 labels. [18:44:17] exhaustive.py (line 182): DEBUG: Merging alignment subset into placement subset for chunk 4: A_111_4. [18:44:17] alignment.py (line 727): DEBUG: Merging started ... [18:44:17] alignment.py (line 834): DEBUG: Merging finished ... [18:44:17] problem.py (line 246): DEBUG: Reading /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_111/A_111_0/hmmbuild.input.q_4t6du8.fasta [] and relabeling it based on 1627 orig column labels. [18:44:17] alignment.py (line 543): DEBUG: Reading base alignment: /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_111/A_111_0/hmmbuild.input.q_4t6du8.fasta. [18:44:17] alignment.py (line 615): DEBUG: Relabeling 1627 (1627) with 1627 labels. [18:44:17] exhaustive.py (line 182): DEBUG: Merging alignment subset into placement subset for chunk 5: A_111_0. [18:44:17] alignment.py (line 727): DEBUG: Merging started ... [18:44:17] alignment.py (line 834): DEBUG: Merging finished ... [18:44:17] problem.py (line 246): DEBUG: Reading /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_111/A_111_1/hmmbuild.input.vastfh5l.fasta [] and relabeling it based on 1604 orig column labels. [18:44:17] alignment.py (line 543): DEBUG: Reading base alignment: /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_111/A_111_1/hmmbuild.input.vastfh5l.fasta. [18:44:17] alignment.py (line 615): DEBUG: Relabeling 1604 (1604) with 1604 labels. [18:44:17] exhaustive.py (line 182): DEBUG: Merging alignment subset into placement subset for chunk 5: A_111_1. [18:44:17] alignment.py (line 727): DEBUG: Merging started ... [18:44:17] alignment.py (line 834): DEBUG: Merging finished ... [18:44:17] problem.py (line 246): DEBUG: Reading /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_111/A_111_2/hmmbuild.input.es7zmpha.fasta ['/tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_111/A_111_2/FC_111_2_5/hmmalign.results.7m6ek1wr'] and relabeling it based on 1601 orig column labels. [18:44:17] alignment.py (line 543): DEBUG: Reading base alignment: /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_111/A_111_2/hmmbuild.input.es7zmpha.fasta. [18:44:17] alignment.py (line 553): DEBUG: Reading sto extended alignment: /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_111/A_111_2/FC_111_2_5/hmmalign.results.7m6ek1wr. [18:44:17] alignment.py (line 578): DEBUG: /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_111/A_111_2/FC_111_2_5/hmmalign.results.7m6ek1wr insertions: 0 [18:44:17] alignment.py (line 556): INFO: Merging extension sto file (/tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_111/A_111_2/FC_111_2_5/hmmalign.results.7m6ek1wr) into base alignment (/tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_111/A_111_2/hmmbuild.input.es7zmpha.fasta). [18:44:17] alignment.py (line 727): DEBUG: Merging started ... [18:44:17] alignment.py (line 834): DEBUG: Merging finished ... [18:44:17] alignment.py (line 560): DEBUG: Finished merging extension sto file (/tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_111/A_111_2/FC_111_2_5/hmmalign.results.7m6ek1wr) into base alignment (/tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_111/A_111_2/hmmbuild.input.es7zmpha.fasta). [18:44:17] alignment.py (line 615): DEBUG: Relabeling 1601 (1601) with 1601 labels. [18:44:17] exhaustive.py (line 182): DEBUG: Merging alignment subset into placement subset for chunk 5: A_111_2. [18:44:17] alignment.py (line 727): DEBUG: Merging started ... [18:44:17] alignment.py (line 834): DEBUG: Merging finished ... [18:44:17] problem.py (line 246): DEBUG: Reading /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_111/A_111_3/hmmbuild.input.o6297fsy.fasta [] and relabeling it based on 1589 orig column labels. [18:44:17] alignment.py (line 543): DEBUG: Reading base alignment: /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_111/A_111_3/hmmbuild.input.o6297fsy.fasta. [18:44:17] alignment.py (line 615): DEBUG: Relabeling 1589 (1589) with 1589 labels. [18:44:17] exhaustive.py (line 182): DEBUG: Merging alignment subset into placement subset for chunk 5: A_111_3. [18:44:17] alignment.py (line 727): DEBUG: Merging started ... [18:44:17] alignment.py (line 834): DEBUG: Merging finished ... [18:44:17] problem.py (line 246): DEBUG: Reading /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_111/A_111_4/hmmbuild.input.cok4natl.fasta [] and relabeling it based on 1617 orig column labels. [18:44:17] alignment.py (line 543): DEBUG: Reading base alignment: /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_111/A_111_4/hmmbuild.input.cok4natl.fasta. [18:44:17] alignment.py (line 615): DEBUG: Relabeling 1617 (1617) with 1617 labels. [18:44:17] exhaustive.py (line 182): DEBUG: Merging alignment subset into placement subset for chunk 5: A_111_4. [18:44:17] alignment.py (line 727): DEBUG: Merging started ... [18:44:17] alignment.py (line 834): DEBUG: Merging finished ... [18:44:17] problem.py (line 246): DEBUG: Reading /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_111/A_111_0/hmmbuild.input.q_4t6du8.fasta [] and relabeling it based on 1627 orig column labels. [18:44:17] alignment.py (line 543): DEBUG: Reading base alignment: /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_111/A_111_0/hmmbuild.input.q_4t6du8.fasta. [18:44:17] alignment.py (line 615): DEBUG: Relabeling 1627 (1627) with 1627 labels. [18:44:17] exhaustive.py (line 182): DEBUG: Merging alignment subset into placement subset for chunk 6: A_111_0. [18:44:17] alignment.py (line 727): DEBUG: Merging started ... [18:44:17] alignment.py (line 834): DEBUG: Merging finished ... [18:44:17] problem.py (line 246): DEBUG: Reading /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_111/A_111_1/hmmbuild.input.vastfh5l.fasta [] and relabeling it based on 1604 orig column labels. [18:44:17] alignment.py (line 543): DEBUG: Reading base alignment: /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_111/A_111_1/hmmbuild.input.vastfh5l.fasta. [18:44:17] alignment.py (line 615): DEBUG: Relabeling 1604 (1604) with 1604 labels. [18:44:17] exhaustive.py (line 182): DEBUG: Merging alignment subset into placement subset for chunk 6: A_111_1. [18:44:17] alignment.py (line 727): DEBUG: Merging started ... [18:44:17] alignment.py (line 834): DEBUG: Merging finished ... [18:44:17] problem.py (line 246): DEBUG: Reading /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_111/A_111_2/hmmbuild.input.es7zmpha.fasta [] and relabeling it based on 1601 orig column labels. [18:44:17] alignment.py (line 543): DEBUG: Reading base alignment: /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_111/A_111_2/hmmbuild.input.es7zmpha.fasta. [18:44:17] alignment.py (line 615): DEBUG: Relabeling 1601 (1601) with 1601 labels. [18:44:17] exhaustive.py (line 182): DEBUG: Merging alignment subset into placement subset for chunk 6: A_111_2. [18:44:17] alignment.py (line 727): DEBUG: Merging started ... [18:44:17] alignment.py (line 834): DEBUG: Merging finished ... [18:44:17] problem.py (line 246): DEBUG: Reading /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_111/A_111_3/hmmbuild.input.o6297fsy.fasta [] and relabeling it based on 1589 orig column labels. [18:44:17] alignment.py (line 543): DEBUG: Reading base alignment: /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_111/A_111_3/hmmbuild.input.o6297fsy.fasta. [18:44:17] alignment.py (line 615): DEBUG: Relabeling 1589 (1589) with 1589 labels. [18:44:17] exhaustive.py (line 182): DEBUG: Merging alignment subset into placement subset for chunk 6: A_111_3. [18:44:17] alignment.py (line 727): DEBUG: Merging started ... [18:44:17] alignment.py (line 834): DEBUG: Merging finished ... [18:44:17] problem.py (line 246): DEBUG: Reading /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_111/A_111_4/hmmbuild.input.cok4natl.fasta [] and relabeling it based on 1617 orig column labels. [18:44:17] alignment.py (line 543): DEBUG: Reading base alignment: /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_111/A_111_4/hmmbuild.input.cok4natl.fasta. [18:44:17] alignment.py (line 615): DEBUG: Relabeling 1617 (1617) with 1617 labels. [18:44:17] exhaustive.py (line 182): DEBUG: Merging alignment subset into placement subset for chunk 6: A_111_4. [18:44:17] alignment.py (line 727): DEBUG: Merging started ... [18:44:17] alignment.py (line 834): DEBUG: Merging finished ... [18:44:17] problem.py (line 246): DEBUG: Reading /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_111/A_111_0/hmmbuild.input.q_4t6du8.fasta [] and relabeling it based on 1627 orig column labels. [18:44:17] alignment.py (line 543): DEBUG: Reading base alignment: /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_111/A_111_0/hmmbuild.input.q_4t6du8.fasta. [18:44:17] alignment.py (line 615): DEBUG: Relabeling 1627 (1627) with 1627 labels. [18:44:17] exhaustive.py (line 182): DEBUG: Merging alignment subset into placement subset for chunk 7: A_111_0. [18:44:17] alignment.py (line 727): DEBUG: Merging started ... [18:44:17] alignment.py (line 834): DEBUG: Merging finished ... [18:44:17] problem.py (line 246): DEBUG: Reading /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_111/A_111_1/hmmbuild.input.vastfh5l.fasta [] and relabeling it based on 1604 orig column labels. [18:44:17] alignment.py (line 543): DEBUG: Reading base alignment: /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_111/A_111_1/hmmbuild.input.vastfh5l.fasta. [18:44:17] alignment.py (line 615): DEBUG: Relabeling 1604 (1604) with 1604 labels. [18:44:17] exhaustive.py (line 182): DEBUG: Merging alignment subset into placement subset for chunk 7: A_111_1. [18:44:17] alignment.py (line 727): DEBUG: Merging started ... [18:44:17] alignment.py (line 834): DEBUG: Merging finished ... [18:44:17] problem.py (line 246): DEBUG: Reading /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_111/A_111_2/hmmbuild.input.es7zmpha.fasta [] and relabeling it based on 1601 orig column labels. [18:44:17] alignment.py (line 543): DEBUG: Reading base alignment: /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_111/A_111_2/hmmbuild.input.es7zmpha.fasta. [18:44:17] alignment.py (line 615): DEBUG: Relabeling 1601 (1601) with 1601 labels. [18:44:17] exhaustive.py (line 182): DEBUG: Merging alignment subset into placement subset for chunk 7: A_111_2. [18:44:17] alignment.py (line 727): DEBUG: Merging started ... [18:44:17] alignment.py (line 834): DEBUG: Merging finished ... [18:44:17] problem.py (line 246): DEBUG: Reading /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_111/A_111_3/hmmbuild.input.o6297fsy.fasta [] and relabeling it based on 1589 orig column labels. [18:44:17] alignment.py (line 543): DEBUG: Reading base alignment: /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_111/A_111_3/hmmbuild.input.o6297fsy.fasta. [18:44:17] alignment.py (line 615): DEBUG: Relabeling 1589 (1589) with 1589 labels. [18:44:17] exhaustive.py (line 182): DEBUG: Merging alignment subset into placement subset for chunk 7: A_111_3. [18:44:17] alignment.py (line 727): DEBUG: Merging started ... [18:44:17] alignment.py (line 834): DEBUG: Merging finished ... [18:44:17] problem.py (line 246): DEBUG: Reading /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_111/A_111_4/hmmbuild.input.cok4natl.fasta [] and relabeling it based on 1617 orig column labels. [18:44:17] alignment.py (line 543): DEBUG: Reading base alignment: /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_111/A_111_4/hmmbuild.input.cok4natl.fasta. [18:44:17] alignment.py (line 615): DEBUG: Relabeling 1617 (1617) with 1617 labels. [18:44:17] exhaustive.py (line 182): DEBUG: Merging alignment subset into placement subset for chunk 7: A_111_4. [18:44:17] alignment.py (line 727): DEBUG: Merging started ... [18:44:17] alignment.py (line 834): DEBUG: Merging finished ... [18:44:17] alignment.py (line 203): DEBUG: Writing alignment of type with length 3 to file /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_111/pplacer.extended.0.2475t5a6.fasta [18:44:17] alignment.py (line 203): DEBUG: Writing alignment of type with length 2957 to file /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_111/pplacer.backbone.k_emd213.fasta [18:44:17] alignment.py (line 203): DEBUG: Writing alignment of type with length 2 to file /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_111/pplacer.extended.1.hdaiondo.fasta [18:44:17] alignment.py (line 203): DEBUG: Writing alignment of type with length 2957 to file /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_111/pplacer.backbone.j63tyyyn.fasta [18:44:17] alignment.py (line 203): DEBUG: Writing alignment of type with length 1 to file /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_111/pplacer.extended.2.nog_2hp4.fasta [18:44:17] alignment.py (line 203): DEBUG: Writing alignment of type with length 2957 to file /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_111/pplacer.backbone.lrjuow4b.fasta [18:44:17] alignment.py (line 203): DEBUG: Writing alignment of type with length 1 to file /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_111/pplacer.extended.3.t4o9igk3.fasta [18:44:17] alignment.py (line 203): DEBUG: Writing alignment of type with length 2957 to file /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_111/pplacer.backbone.8jb57hvl.fasta [18:44:17] alignment.py (line 203): DEBUG: Writing alignment of type with length 1 to file /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_111/pplacer.extended.4._dgj4r8x.fasta [18:44:17] alignment.py (line 203): DEBUG: Writing alignment of type with length 2957 to file /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_111/pplacer.backbone.u746f_is.fasta [18:44:17] alignment.py (line 203): DEBUG: Writing alignment of type with length 1 to file /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_111/pplacer.extended.5.w6cu68g9.fasta [18:44:17] alignment.py (line 203): DEBUG: Writing alignment of type with length 2957 to file /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_111/pplacer.backbone.rya2nv0w.fasta [18:44:17] alignment.py (line 203): DEBUG: Writing alignment of type with length 0 to file /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_111/pplacer.extended.6.corajxnm.fasta [18:44:17] alignment.py (line 203): DEBUG: Writing alignment of type with length 2957 to file /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_111/pplacer.backbone.u8843xsw.fasta [18:44:17] alignment.py (line 203): DEBUG: Writing alignment of type with length 0 to file /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_111/pplacer.extended.7.y67cajl1.fasta [18:44:17] alignment.py (line 203): DEBUG: Writing alignment of type with length 2957 to file /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_111/pplacer.backbone.rpxnerbj.fasta [18:44:17] exhaustive.py (line 151): INFO: Merging sub-alignments for placement problem : P_113. [18:44:17] problem.py (line 246): DEBUG: Reading /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_113/A_113_0/hmmbuild.input.vwqj_r4l.fasta [] and relabeling it based on 2175 orig column labels. [18:44:17] alignment.py (line 543): DEBUG: Reading base alignment: /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_113/A_113_0/hmmbuild.input.vwqj_r4l.fasta. [18:44:17] alignment.py (line 615): DEBUG: Relabeling 2175 (2175) with 2175 labels. [18:44:17] exhaustive.py (line 182): DEBUG: Merging alignment subset into placement subset for chunk 0: A_113_0. [18:44:17] alignment.py (line 727): DEBUG: Merging started ... [18:44:17] alignment.py (line 834): DEBUG: Merging finished ... [18:44:17] problem.py (line 246): DEBUG: Reading /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_113/A_113_1/hmmbuild.input.2cpjmbeu.fasta [] and relabeling it based on 2139 orig column labels. [18:44:17] alignment.py (line 543): DEBUG: Reading base alignment: /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_113/A_113_1/hmmbuild.input.2cpjmbeu.fasta. [18:44:17] alignment.py (line 615): DEBUG: Relabeling 2139 (2139) with 2139 labels. [18:44:17] exhaustive.py (line 182): DEBUG: Merging alignment subset into placement subset for chunk 0: A_113_1. [18:44:17] alignment.py (line 727): DEBUG: Merging started ... [18:44:17] alignment.py (line 834): DEBUG: Merging finished ... [18:44:17] problem.py (line 246): DEBUG: Reading /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_113/A_113_2/hmmbuild.input.2i_4sp34.fasta [] and relabeling it based on 1733 orig column labels. [18:44:17] alignment.py (line 543): DEBUG: Reading base alignment: /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_113/A_113_2/hmmbuild.input.2i_4sp34.fasta. [18:44:17] alignment.py (line 615): DEBUG: Relabeling 1733 (1733) with 1733 labels. [18:44:17] exhaustive.py (line 182): DEBUG: Merging alignment subset into placement subset for chunk 0: A_113_2. [18:44:17] alignment.py (line 727): DEBUG: Merging started ... [18:44:17] alignment.py (line 834): DEBUG: Merging finished ... [18:44:17] problem.py (line 246): DEBUG: Reading /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_113/A_113_3/hmmbuild.input.jov2dw6r.fasta [] and relabeling it based on 2195 orig column labels. [18:44:17] alignment.py (line 543): DEBUG: Reading base alignment: /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_113/A_113_3/hmmbuild.input.jov2dw6r.fasta. [18:44:17] alignment.py (line 615): DEBUG: Relabeling 2195 (2195) with 2195 labels. [18:44:17] exhaustive.py (line 182): DEBUG: Merging alignment subset into placement subset for chunk 0: A_113_3. [18:44:17] alignment.py (line 727): DEBUG: Merging started ... [18:44:17] alignment.py (line 834): DEBUG: Merging finished ... [18:44:17] problem.py (line 246): DEBUG: Reading /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_113/A_113_0/hmmbuild.input.vwqj_r4l.fasta [] and relabeling it based on 2175 orig column labels. [18:44:17] alignment.py (line 543): DEBUG: Reading base alignment: /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_113/A_113_0/hmmbuild.input.vwqj_r4l.fasta. [18:44:17] alignment.py (line 615): DEBUG: Relabeling 2175 (2175) with 2175 labels. [18:44:17] exhaustive.py (line 182): DEBUG: Merging alignment subset into placement subset for chunk 1: A_113_0. [18:44:17] alignment.py (line 727): DEBUG: Merging started ... [18:44:17] alignment.py (line 834): DEBUG: Merging finished ... [18:44:17] problem.py (line 246): DEBUG: Reading /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_113/A_113_1/hmmbuild.input.2cpjmbeu.fasta [] and relabeling it based on 2139 orig column labels. [18:44:17] alignment.py (line 543): DEBUG: Reading base alignment: /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_113/A_113_1/hmmbuild.input.2cpjmbeu.fasta. [18:44:17] alignment.py (line 615): DEBUG: Relabeling 2139 (2139) with 2139 labels. [18:44:17] exhaustive.py (line 182): DEBUG: Merging alignment subset into placement subset for chunk 1: A_113_1. [18:44:17] alignment.py (line 727): DEBUG: Merging started ... [18:44:17] alignment.py (line 834): DEBUG: Merging finished ... [18:44:17] problem.py (line 246): DEBUG: Reading /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_113/A_113_2/hmmbuild.input.2i_4sp34.fasta [] and relabeling it based on 1733 orig column labels. [18:44:17] alignment.py (line 543): DEBUG: Reading base alignment: /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_113/A_113_2/hmmbuild.input.2i_4sp34.fasta. [18:44:17] alignment.py (line 615): DEBUG: Relabeling 1733 (1733) with 1733 labels. [18:44:17] exhaustive.py (line 182): DEBUG: Merging alignment subset into placement subset for chunk 1: A_113_2. [18:44:17] alignment.py (line 727): DEBUG: Merging started ... [18:44:17] alignment.py (line 834): DEBUG: Merging finished ... [18:44:17] problem.py (line 246): DEBUG: Reading /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_113/A_113_3/hmmbuild.input.jov2dw6r.fasta [] and relabeling it based on 2195 orig column labels. [18:44:17] alignment.py (line 543): DEBUG: Reading base alignment: /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_113/A_113_3/hmmbuild.input.jov2dw6r.fasta. [18:44:17] alignment.py (line 615): DEBUG: Relabeling 2195 (2195) with 2195 labels. [18:44:17] exhaustive.py (line 182): DEBUG: Merging alignment subset into placement subset for chunk 1: A_113_3. [18:44:17] alignment.py (line 727): DEBUG: Merging started ... [18:44:17] alignment.py (line 834): DEBUG: Merging finished ... [18:44:17] problem.py (line 246): DEBUG: Reading /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_113/A_113_0/hmmbuild.input.vwqj_r4l.fasta [] and relabeling it based on 2175 orig column labels. [18:44:17] alignment.py (line 543): DEBUG: Reading base alignment: /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_113/A_113_0/hmmbuild.input.vwqj_r4l.fasta. [18:44:17] alignment.py (line 615): DEBUG: Relabeling 2175 (2175) with 2175 labels. [18:44:17] exhaustive.py (line 182): DEBUG: Merging alignment subset into placement subset for chunk 2: A_113_0. [18:44:17] alignment.py (line 727): DEBUG: Merging started ... [18:44:17] alignment.py (line 834): DEBUG: Merging finished ... [18:44:17] problem.py (line 246): DEBUG: Reading /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_113/A_113_1/hmmbuild.input.2cpjmbeu.fasta [] and relabeling it based on 2139 orig column labels. [18:44:17] alignment.py (line 543): DEBUG: Reading base alignment: /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_113/A_113_1/hmmbuild.input.2cpjmbeu.fasta. [18:44:17] alignment.py (line 615): DEBUG: Relabeling 2139 (2139) with 2139 labels. [18:44:17] exhaustive.py (line 182): DEBUG: Merging alignment subset into placement subset for chunk 2: A_113_1. [18:44:17] alignment.py (line 727): DEBUG: Merging started ... [18:44:17] alignment.py (line 834): DEBUG: Merging finished ... [18:44:17] problem.py (line 246): DEBUG: Reading /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_113/A_113_2/hmmbuild.input.2i_4sp34.fasta [] and relabeling it based on 1733 orig column labels. [18:44:17] alignment.py (line 543): DEBUG: Reading base alignment: /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_113/A_113_2/hmmbuild.input.2i_4sp34.fasta. [18:44:17] alignment.py (line 615): DEBUG: Relabeling 1733 (1733) with 1733 labels. [18:44:17] exhaustive.py (line 182): DEBUG: Merging alignment subset into placement subset for chunk 2: A_113_2. [18:44:17] alignment.py (line 727): DEBUG: Merging started ... [18:44:17] alignment.py (line 834): DEBUG: Merging finished ... [18:44:17] problem.py (line 246): DEBUG: Reading /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_113/A_113_3/hmmbuild.input.jov2dw6r.fasta [] and relabeling it based on 2195 orig column labels. [18:44:17] alignment.py (line 543): DEBUG: Reading base alignment: /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_113/A_113_3/hmmbuild.input.jov2dw6r.fasta. [18:44:17] alignment.py (line 615): DEBUG: Relabeling 2195 (2195) with 2195 labels. [18:44:17] exhaustive.py (line 182): DEBUG: Merging alignment subset into placement subset for chunk 2: A_113_3. [18:44:17] alignment.py (line 727): DEBUG: Merging started ... [18:44:17] alignment.py (line 834): DEBUG: Merging finished ... [18:44:17] problem.py (line 246): DEBUG: Reading /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_113/A_113_0/hmmbuild.input.vwqj_r4l.fasta [] and relabeling it based on 2175 orig column labels. [18:44:17] alignment.py (line 543): DEBUG: Reading base alignment: /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_113/A_113_0/hmmbuild.input.vwqj_r4l.fasta. [18:44:17] alignment.py (line 615): DEBUG: Relabeling 2175 (2175) with 2175 labels. [18:44:17] exhaustive.py (line 182): DEBUG: Merging alignment subset into placement subset for chunk 3: A_113_0. [18:44:17] alignment.py (line 727): DEBUG: Merging started ... [18:44:17] alignment.py (line 834): DEBUG: Merging finished ... [18:44:17] problem.py (line 246): DEBUG: Reading /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_113/A_113_1/hmmbuild.input.2cpjmbeu.fasta [] and relabeling it based on 2139 orig column labels. [18:44:17] alignment.py (line 543): DEBUG: Reading base alignment: /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_113/A_113_1/hmmbuild.input.2cpjmbeu.fasta. [18:44:17] alignment.py (line 615): DEBUG: Relabeling 2139 (2139) with 2139 labels. [18:44:17] exhaustive.py (line 182): DEBUG: Merging alignment subset into placement subset for chunk 3: A_113_1. [18:44:17] alignment.py (line 727): DEBUG: Merging started ... [18:44:17] alignment.py (line 834): DEBUG: Merging finished ... [18:44:17] problem.py (line 246): DEBUG: Reading /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_113/A_113_2/hmmbuild.input.2i_4sp34.fasta [] and relabeling it based on 1733 orig column labels. [18:44:17] alignment.py (line 543): DEBUG: Reading base alignment: /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_113/A_113_2/hmmbuild.input.2i_4sp34.fasta. [18:44:17] alignment.py (line 615): DEBUG: Relabeling 1733 (1733) with 1733 labels. [18:44:17] exhaustive.py (line 182): DEBUG: Merging alignment subset into placement subset for chunk 3: A_113_2. [18:44:17] alignment.py (line 727): DEBUG: Merging started ... [18:44:17] alignment.py (line 834): DEBUG: Merging finished ... [18:44:17] problem.py (line 246): DEBUG: Reading /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_113/A_113_3/hmmbuild.input.jov2dw6r.fasta [] and relabeling it based on 2195 orig column labels. [18:44:17] alignment.py (line 543): DEBUG: Reading base alignment: /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_113/A_113_3/hmmbuild.input.jov2dw6r.fasta. [18:44:17] alignment.py (line 615): DEBUG: Relabeling 2195 (2195) with 2195 labels. [18:44:17] exhaustive.py (line 182): DEBUG: Merging alignment subset into placement subset for chunk 3: A_113_3. [18:44:17] alignment.py (line 727): DEBUG: Merging started ... [18:44:17] alignment.py (line 834): DEBUG: Merging finished ... [18:44:17] problem.py (line 246): DEBUG: Reading /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_113/A_113_0/hmmbuild.input.vwqj_r4l.fasta [] and relabeling it based on 2175 orig column labels. [18:44:17] alignment.py (line 543): DEBUG: Reading base alignment: /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_113/A_113_0/hmmbuild.input.vwqj_r4l.fasta. [18:44:17] alignment.py (line 615): DEBUG: Relabeling 2175 (2175) with 2175 labels. [18:44:17] exhaustive.py (line 182): DEBUG: Merging alignment subset into placement subset for chunk 4: A_113_0. [18:44:17] alignment.py (line 727): DEBUG: Merging started ... [18:44:17] alignment.py (line 834): DEBUG: Merging finished ... [18:44:17] problem.py (line 246): DEBUG: Reading /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_113/A_113_1/hmmbuild.input.2cpjmbeu.fasta [] and relabeling it based on 2139 orig column labels. [18:44:17] alignment.py (line 543): DEBUG: Reading base alignment: /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_113/A_113_1/hmmbuild.input.2cpjmbeu.fasta. [18:44:17] alignment.py (line 615): DEBUG: Relabeling 2139 (2139) with 2139 labels. [18:44:17] exhaustive.py (line 182): DEBUG: Merging alignment subset into placement subset for chunk 4: A_113_1. [18:44:17] alignment.py (line 727): DEBUG: Merging started ... [18:44:17] alignment.py (line 834): DEBUG: Merging finished ... [18:44:17] problem.py (line 246): DEBUG: Reading /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_113/A_113_2/hmmbuild.input.2i_4sp34.fasta [] and relabeling it based on 1733 orig column labels. [18:44:17] alignment.py (line 543): DEBUG: Reading base alignment: /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_113/A_113_2/hmmbuild.input.2i_4sp34.fasta. [18:44:17] alignment.py (line 615): DEBUG: Relabeling 1733 (1733) with 1733 labels. [18:44:17] exhaustive.py (line 182): DEBUG: Merging alignment subset into placement subset for chunk 4: A_113_2. [18:44:17] alignment.py (line 727): DEBUG: Merging started ... [18:44:17] alignment.py (line 834): DEBUG: Merging finished ... [18:44:17] problem.py (line 246): DEBUG: Reading /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_113/A_113_3/hmmbuild.input.jov2dw6r.fasta [] and relabeling it based on 2195 orig column labels. [18:44:17] alignment.py (line 543): DEBUG: Reading base alignment: /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_113/A_113_3/hmmbuild.input.jov2dw6r.fasta. [18:44:17] alignment.py (line 615): DEBUG: Relabeling 2195 (2195) with 2195 labels. [18:44:17] exhaustive.py (line 182): DEBUG: Merging alignment subset into placement subset for chunk 4: A_113_3. [18:44:17] alignment.py (line 727): DEBUG: Merging started ... [18:44:17] alignment.py (line 834): DEBUG: Merging finished ... [18:44:17] problem.py (line 246): DEBUG: Reading /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_113/A_113_0/hmmbuild.input.vwqj_r4l.fasta [] and relabeling it based on 2175 orig column labels. [18:44:17] alignment.py (line 543): DEBUG: Reading base alignment: /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_113/A_113_0/hmmbuild.input.vwqj_r4l.fasta. [18:44:17] alignment.py (line 615): DEBUG: Relabeling 2175 (2175) with 2175 labels. [18:44:17] exhaustive.py (line 182): DEBUG: Merging alignment subset into placement subset for chunk 5: A_113_0. [18:44:17] alignment.py (line 727): DEBUG: Merging started ... [18:44:17] alignment.py (line 834): DEBUG: Merging finished ... [18:44:17] problem.py (line 246): DEBUG: Reading /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_113/A_113_1/hmmbuild.input.2cpjmbeu.fasta [] and relabeling it based on 2139 orig column labels. [18:44:17] alignment.py (line 543): DEBUG: Reading base alignment: /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_113/A_113_1/hmmbuild.input.2cpjmbeu.fasta. [18:44:17] alignment.py (line 615): DEBUG: Relabeling 2139 (2139) with 2139 labels. [18:44:17] exhaustive.py (line 182): DEBUG: Merging alignment subset into placement subset for chunk 5: A_113_1. [18:44:17] alignment.py (line 727): DEBUG: Merging started ... [18:44:17] alignment.py (line 834): DEBUG: Merging finished ... [18:44:17] problem.py (line 246): DEBUG: Reading /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_113/A_113_2/hmmbuild.input.2i_4sp34.fasta [] and relabeling it based on 1733 orig column labels. [18:44:17] alignment.py (line 543): DEBUG: Reading base alignment: /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_113/A_113_2/hmmbuild.input.2i_4sp34.fasta. [18:44:17] alignment.py (line 615): DEBUG: Relabeling 1733 (1733) with 1733 labels. [18:44:17] exhaustive.py (line 182): DEBUG: Merging alignment subset into placement subset for chunk 5: A_113_2. [18:44:17] alignment.py (line 727): DEBUG: Merging started ... [18:44:17] alignment.py (line 834): DEBUG: Merging finished ... [18:44:17] problem.py (line 246): DEBUG: Reading /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_113/A_113_3/hmmbuild.input.jov2dw6r.fasta [] and relabeling it based on 2195 orig column labels. [18:44:17] alignment.py (line 543): DEBUG: Reading base alignment: /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_113/A_113_3/hmmbuild.input.jov2dw6r.fasta. [18:44:17] alignment.py (line 615): DEBUG: Relabeling 2195 (2195) with 2195 labels. [18:44:17] exhaustive.py (line 182): DEBUG: Merging alignment subset into placement subset for chunk 5: A_113_3. [18:44:17] alignment.py (line 727): DEBUG: Merging started ... [18:44:17] alignment.py (line 834): DEBUG: Merging finished ... [18:44:17] problem.py (line 246): DEBUG: Reading /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_113/A_113_0/hmmbuild.input.vwqj_r4l.fasta [] and relabeling it based on 2175 orig column labels. [18:44:17] alignment.py (line 543): DEBUG: Reading base alignment: /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_113/A_113_0/hmmbuild.input.vwqj_r4l.fasta. [18:44:17] alignment.py (line 615): DEBUG: Relabeling 2175 (2175) with 2175 labels. [18:44:17] exhaustive.py (line 182): DEBUG: Merging alignment subset into placement subset for chunk 6: A_113_0. [18:44:17] alignment.py (line 727): DEBUG: Merging started ... [18:44:17] alignment.py (line 834): DEBUG: Merging finished ... [18:44:17] problem.py (line 246): DEBUG: Reading /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_113/A_113_1/hmmbuild.input.2cpjmbeu.fasta [] and relabeling it based on 2139 orig column labels. [18:44:17] alignment.py (line 543): DEBUG: Reading base alignment: /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_113/A_113_1/hmmbuild.input.2cpjmbeu.fasta. [18:44:17] alignment.py (line 615): DEBUG: Relabeling 2139 (2139) with 2139 labels. [18:44:17] exhaustive.py (line 182): DEBUG: Merging alignment subset into placement subset for chunk 6: A_113_1. [18:44:17] alignment.py (line 727): DEBUG: Merging started ... [18:44:17] alignment.py (line 834): DEBUG: Merging finished ... [18:44:17] problem.py (line 246): DEBUG: Reading /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_113/A_113_2/hmmbuild.input.2i_4sp34.fasta [] and relabeling it based on 1733 orig column labels. [18:44:17] alignment.py (line 543): DEBUG: Reading base alignment: /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_113/A_113_2/hmmbuild.input.2i_4sp34.fasta. [18:44:17] alignment.py (line 615): DEBUG: Relabeling 1733 (1733) with 1733 labels. [18:44:17] exhaustive.py (line 182): DEBUG: Merging alignment subset into placement subset for chunk 6: A_113_2. [18:44:17] alignment.py (line 727): DEBUG: Merging started ... [18:44:17] alignment.py (line 834): DEBUG: Merging finished ... [18:44:17] problem.py (line 246): DEBUG: Reading /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_113/A_113_3/hmmbuild.input.jov2dw6r.fasta [] and relabeling it based on 2195 orig column labels. [18:44:17] alignment.py (line 543): DEBUG: Reading base alignment: /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_113/A_113_3/hmmbuild.input.jov2dw6r.fasta. [18:44:17] alignment.py (line 615): DEBUG: Relabeling 2195 (2195) with 2195 labels. [18:44:18] exhaustive.py (line 182): DEBUG: Merging alignment subset into placement subset for chunk 6: A_113_3. [18:44:18] alignment.py (line 727): DEBUG: Merging started ... [18:44:18] alignment.py (line 834): DEBUG: Merging finished ... [18:44:18] problem.py (line 246): DEBUG: Reading /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_113/A_113_0/hmmbuild.input.vwqj_r4l.fasta [] and relabeling it based on 2175 orig column labels. [18:44:18] alignment.py (line 543): DEBUG: Reading base alignment: /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_113/A_113_0/hmmbuild.input.vwqj_r4l.fasta. [18:44:18] alignment.py (line 615): DEBUG: Relabeling 2175 (2175) with 2175 labels. [18:44:18] exhaustive.py (line 182): DEBUG: Merging alignment subset into placement subset for chunk 7: A_113_0. [18:44:18] alignment.py (line 727): DEBUG: Merging started ... [18:44:18] alignment.py (line 834): DEBUG: Merging finished ... [18:44:18] problem.py (line 246): DEBUG: Reading /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_113/A_113_1/hmmbuild.input.2cpjmbeu.fasta [] and relabeling it based on 2139 orig column labels. [18:44:18] alignment.py (line 543): DEBUG: Reading base alignment: /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_113/A_113_1/hmmbuild.input.2cpjmbeu.fasta. [18:44:18] alignment.py (line 615): DEBUG: Relabeling 2139 (2139) with 2139 labels. [18:44:18] exhaustive.py (line 182): DEBUG: Merging alignment subset into placement subset for chunk 7: A_113_1. [18:44:18] alignment.py (line 727): DEBUG: Merging started ... [18:44:18] alignment.py (line 834): DEBUG: Merging finished ... [18:44:18] problem.py (line 246): DEBUG: Reading /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_113/A_113_2/hmmbuild.input.2i_4sp34.fasta [] and relabeling it based on 1733 orig column labels. [18:44:18] alignment.py (line 543): DEBUG: Reading base alignment: /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_113/A_113_2/hmmbuild.input.2i_4sp34.fasta. [18:44:18] alignment.py (line 615): DEBUG: Relabeling 1733 (1733) with 1733 labels. [18:44:18] exhaustive.py (line 182): DEBUG: Merging alignment subset into placement subset for chunk 7: A_113_2. [18:44:18] alignment.py (line 727): DEBUG: Merging started ... [18:44:18] alignment.py (line 834): DEBUG: Merging finished ... [18:44:18] problem.py (line 246): DEBUG: Reading /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_113/A_113_3/hmmbuild.input.jov2dw6r.fasta [] and relabeling it based on 2195 orig column labels. [18:44:18] alignment.py (line 543): DEBUG: Reading base alignment: /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_113/A_113_3/hmmbuild.input.jov2dw6r.fasta. [18:44:18] alignment.py (line 615): DEBUG: Relabeling 2195 (2195) with 2195 labels. [18:44:18] exhaustive.py (line 182): DEBUG: Merging alignment subset into placement subset for chunk 7: A_113_3. [18:44:18] alignment.py (line 727): DEBUG: Merging started ... [18:44:18] alignment.py (line 834): DEBUG: Merging finished ... [18:44:18] alignment.py (line 203): DEBUG: Writing alignment of type with length 0 to file /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_113/pplacer.extended.0.5dzfty73.fasta [18:44:18] alignment.py (line 203): DEBUG: Writing alignment of type with length 3616 to file /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_113/pplacer.backbone.7c_g_er8.fasta [18:44:18] alignment.py (line 203): DEBUG: Writing alignment of type with length 0 to file /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_113/pplacer.extended.1.6sgl0imd.fasta [18:44:18] alignment.py (line 203): DEBUG: Writing alignment of type with length 3616 to file /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_113/pplacer.backbone.am95e63h.fasta [18:44:18] alignment.py (line 203): DEBUG: Writing alignment of type with length 0 to file /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_113/pplacer.extended.2.uo7isf38.fasta [18:44:18] alignment.py (line 203): DEBUG: Writing alignment of type with length 3616 to file /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_113/pplacer.backbone.w3fkg7y7.fasta [18:44:18] alignment.py (line 203): DEBUG: Writing alignment of type with length 0 to file /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_113/pplacer.extended.3.1rztgs7o.fasta [18:44:18] alignment.py (line 203): DEBUG: Writing alignment of type with length 3616 to file /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_113/pplacer.backbone.fufr6ugy.fasta [18:44:18] alignment.py (line 203): DEBUG: Writing alignment of type with length 0 to file /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_113/pplacer.extended.4.722oivlh.fasta [18:44:18] alignment.py (line 203): DEBUG: Writing alignment of type with length 3616 to file /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_113/pplacer.backbone.8zcjuo5h.fasta [18:44:18] alignment.py (line 203): DEBUG: Writing alignment of type with length 0 to file /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_113/pplacer.extended.5.94qly2z_.fasta [18:44:18] alignment.py (line 203): DEBUG: Writing alignment of type with length 3616 to file /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_113/pplacer.backbone.4g5lae4e.fasta [18:44:18] alignment.py (line 203): DEBUG: Writing alignment of type with length 0 to file /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_113/pplacer.extended.6.gw3xyji6.fasta [18:44:18] alignment.py (line 203): DEBUG: Writing alignment of type with length 3616 to file /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_113/pplacer.backbone.vd5ua3ya.fasta [18:44:18] alignment.py (line 203): DEBUG: Writing alignment of type with length 0 to file /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_113/pplacer.extended.7.5hauw7ll.fasta [18:44:18] alignment.py (line 203): DEBUG: Writing alignment of type with length 3616 to file /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_113/pplacer.backbone.x8jp3krv.fasta multiprocessing.pool.RemoteTraceback: """ Traceback (most recent call last): File "/home/lisou/anaconda3/envs/qiime2-2022.8/lib/python3.8/multiprocessing/pool.py", line 125, in worker result = (True, func(*args, **kwds)) File "/home/lisou/anaconda3/envs/qiime2-2022.8/lib/python3.8/site-packages/sepp/scheduler.py", line 74, in __call__ return self.run() File "/home/lisou/anaconda3/envs/qiime2-2022.8/lib/python3.8/site-packages/sepp/jobs.py", line 150, in run raise JobError("\n".join([ sepp.scheduler.JobError: The following execution failed: /home/lisou/anaconda3/envs/qiime2-2022.8/bin/pplacer --out-dir /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_3 -j 1 -r /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_3/pplacer.backbone.mkgx3mv5.fasta -s /tmp/qiime2/lisou/data/e44b5e78-31e5-4a0f-9041-494bc3ca2df2/data/raxml-info.txt -t /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_3/pplacer.tree.9n6et8k2.tre --groups 10 /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_3/pplacer.extended.0.zv8st3jy.fasta No error messages available """ The above exception was the direct cause of the following exception: Traceback (most recent call last): File "/home/lisou/anaconda3/envs/qiime2-2022.8/bin/run_sepp.py", line 26, in ExhaustiveAlgorithm().run() File "/home/lisou/anaconda3/envs/qiime2-2022.8/lib/python3.8/site-packages/sepp/algorithm.py", line 174, in run if (not JobPool().wait_for_all_jobs()): File "/home/lisou/anaconda3/envs/qiime2-2022.8/lib/python3.8/site-packages/sepp/scheduler.py", line 365, in wait_for_all_jobs result.get() File "/home/lisou/anaconda3/envs/qiime2-2022.8/lib/python3.8/multiprocessing/pool.py", line 771, in get raise self._value sepp.scheduler.JobError: The following execution failed: /home/lisou/anaconda3/envs/qiime2-2022.8/bin/pplacer --out-dir /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_3 -j 1 -r /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_3/pplacer.backbone.mkgx3mv5.fasta -s /tmp/qiime2/lisou/data/e44b5e78-31e5-4a0f-9041-494bc3ca2df2/data/raxml-info.txt -t /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_3/pplacer.tree.9n6et8k2.tre --groups 10 /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_3/pplacer.extended.0.zv8st3jy.fasta No error messages available Traceback (most recent call last): File "/home/lisou/anaconda3/envs/qiime2-2022.8/lib/python3.8/site-packages/sepp/jobs.py", line 150, in run raise JobError("\n".join([ sepp.scheduler.JobError: The following execution failed: /home/lisou/anaconda3/envs/qiime2-2022.8/bin/pplacer --out-dir /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_22 -j 1 -r /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_22/pplacer.backbone.s3ebq4k0.fasta -s /tmp/qiime2/lisou/data/e44b5e78-31e5-4a0f-9041-494bc3ca2df2/data/raxml-info.txt -t /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_22/pplacer.tree.pluh_3b3.tre --groups 10 /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_22/pplacer.extended.3.z59eu3x7.fasta No error messages available Traceback (most recent call last): File "/home/lisou/anaconda3/envs/qiime2-2022.8/lib/python3.8/site-packages/sepp/jobs.py", line 150, in run raise JobError("\n".join([ sepp.scheduler.JobError: The following execution failed: /home/lisou/anaconda3/envs/qiime2-2022.8/bin/pplacer --out-dir /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_22 -j 1 -r /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_22/pplacer.backbone.2hscdgj_.fasta -s /tmp/qiime2/lisou/data/e44b5e78-31e5-4a0f-9041-494bc3ca2df2/data/raxml-info.txt -t /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_22/pplacer.tree.6zlznbkj.tre --groups 10 /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_22/pplacer.extended.2.5dep1rj6.fasta No error messages available Traceback (most recent call last): File "/home/lisou/anaconda3/envs/qiime2-2022.8/lib/python3.8/site-packages/sepp/jobs.py", line 150, in run raise JobError("\n".join([ sepp.scheduler.JobError: The following execution failed: /home/lisou/anaconda3/envs/qiime2-2022.8/bin/pplacer --out-dir /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_19 -j 1 -r /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_19/pplacer.backbone.xx9_3i7n.fasta -s /tmp/qiime2/lisou/data/e44b5e78-31e5-4a0f-9041-494bc3ca2df2/data/raxml-info.txt -t /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_19/pplacer.tree.wxpdk0mh.tre --groups 10 /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_19/pplacer.extended.1.rc9n1y8r.fasta No error messages available Traceback (most recent call last): File "/home/lisou/anaconda3/envs/qiime2-2022.8/lib/python3.8/site-packages/sepp/jobs.py", line 150, in run raise JobError("\n".join([ sepp.scheduler.JobError: The following execution failed: /home/lisou/anaconda3/envs/qiime2-2022.8/bin/pplacer --out-dir /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_23 -j 1 -r /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_23/pplacer.backbone.n8j715e6.fasta -s /tmp/qiime2/lisou/data/e44b5e78-31e5-4a0f-9041-494bc3ca2df2/data/raxml-info.txt -t /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_23/pplacer.tree.cjcuqqvx.tre --groups 10 /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_23/pplacer.extended.1.9xs3ogf3.fasta No error messages available Traceback (most recent call last): File "/home/lisou/anaconda3/envs/qiime2-2022.8/lib/python3.8/site-packages/sepp/jobs.py", line 150, in run raise JobError("\n".join([ sepp.scheduler.JobError: The following execution failed: /home/lisou/anaconda3/envs/qiime2-2022.8/bin/pplacer --out-dir /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_6 -j 1 -r /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_6/pplacer.backbone.5glf65qa.fasta -s /tmp/qiime2/lisou/data/e44b5e78-31e5-4a0f-9041-494bc3ca2df2/data/raxml-info.txt -t /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_6/pplacer.tree.f_z7ahe9.tre --groups 10 /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_6/pplacer.extended.1.xe9r1r78.fasta No error messages available Traceback (most recent call last): File "/home/lisou/anaconda3/envs/qiime2-2022.8/lib/python3.8/site-packages/sepp/jobs.py", line 150, in run raise JobError("\n".join([ sepp.scheduler.JobError: The following execution failed: /home/lisou/anaconda3/envs/qiime2-2022.8/bin/pplacer --out-dir /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_19 -j 1 -r /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_19/pplacer.backbone.0m1mgr5g.fasta -s /tmp/qiime2/lisou/data/e44b5e78-31e5-4a0f-9041-494bc3ca2df2/data/raxml-info.txt -t /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_19/pplacer.tree.hk6hi1ox.tre --groups 10 /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_19/pplacer.extended.3.ohkj8uon.fasta No error messages available Traceback (most recent call last): File "/home/lisou/anaconda3/envs/qiime2-2022.8/lib/python3.8/site-packages/sepp/jobs.py", line 150, in run raise JobError("\n".join([ sepp.scheduler.JobError: The following execution failed: /home/lisou/anaconda3/envs/qiime2-2022.8/bin/pplacer --out-dir /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_17 -j 1 -r /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_17/pplacer.backbone.cmdx4qvw.fasta -s /tmp/qiime2/lisou/data/e44b5e78-31e5-4a0f-9041-494bc3ca2df2/data/raxml-info.txt -t /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_17/pplacer.tree.o3e9njzo.tre --groups 10 /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_17/pplacer.extended.0.sv3xxx_5.fasta No error messages available Traceback (most recent call last): File "/home/lisou/anaconda3/envs/qiime2-2022.8/lib/python3.8/site-packages/sepp/jobs.py", line 150, in run raise JobError("\n".join([ sepp.scheduler.JobError: The following execution failed: /home/lisou/anaconda3/envs/qiime2-2022.8/bin/pplacer --out-dir /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_18 -j 1 -r /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_18/pplacer.backbone.iwf5mcz9.fasta -s /tmp/qiime2/lisou/data/e44b5e78-31e5-4a0f-9041-494bc3ca2df2/data/raxml-info.txt -t /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_18/pplacer.tree.5uojzka2.tre --groups 10 /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_18/pplacer.extended.0.hdrryf6p.fasta No error messages available Traceback (most recent call last): File "/home/lisou/anaconda3/envs/qiime2-2022.8/lib/python3.8/site-packages/sepp/jobs.py", line 150, in run raise JobError("\n".join([ sepp.scheduler.JobError: The following execution failed: /home/lisou/anaconda3/envs/qiime2-2022.8/bin/pplacer --out-dir /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_23 -j 1 -r /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_23/pplacer.backbone.ypo0wd6c.fasta -s /tmp/qiime2/lisou/data/e44b5e78-31e5-4a0f-9041-494bc3ca2df2/data/raxml-info.txt -t /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_23/pplacer.tree.k_tfnayp.tre --groups 10 /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_23/pplacer.extended.0.gatmh265.fasta No error messages available Traceback (most recent call last): File "/home/lisou/anaconda3/envs/qiime2-2022.8/lib/python3.8/site-packages/sepp/jobs.py", line 150, in run raise JobError("\n".join([ sepp.scheduler.JobError: The following execution failed: /home/lisou/anaconda3/envs/qiime2-2022.8/bin/pplacer --out-dir /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_22 -j 1 -r /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_22/pplacer.backbone.la3mfuue.fasta -s /tmp/qiime2/lisou/data/e44b5e78-31e5-4a0f-9041-494bc3ca2df2/data/raxml-info.txt -t /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_22/pplacer.tree.ub3xrba5.tre --groups 10 /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_22/pplacer.extended.1.wl8w84ff.fasta No error messages available Traceback (most recent call last): File "/home/lisou/anaconda3/envs/qiime2-2022.8/lib/python3.8/site-packages/sepp/jobs.py", line 150, in run raise JobError("\n".join([ sepp.scheduler.JobError: The following execution failed: /home/lisou/anaconda3/envs/qiime2-2022.8/bin/pplacer --out-dir /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_22 -j 1 -r /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_22/pplacer.backbone.ww_1gcri.fasta -s /tmp/qiime2/lisou/data/e44b5e78-31e5-4a0f-9041-494bc3ca2df2/data/raxml-info.txt -t /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_22/pplacer.tree.mippxatp.tre --groups 10 /tmp/tmp.3vaHkHThth/sepp-tempssd-LZdioY6Kvn/q2-fragment-insertion.ypeox8ka/root/P_22/pplacer.extended.0.v_qoew7u.fasta No error messages available ===================================================================== Traceback (most recent call last): File "/home/lisou/anaconda3/envs/qiime2-2022.8/lib/python3.8/site-packages/q2cli/commands.py", line 339, in __call__ results = action(**arguments) File "", line 2, in sepp File "/home/lisou/anaconda3/envs/qiime2-2022.8/lib/python3.8/site-packages/qiime2/sdk/action.py", line 234, in bound_callable outputs = self._callable_executor_(scope, callable_args, File "/home/lisou/anaconda3/envs/qiime2-2022.8/lib/python3.8/site-packages/qiime2/sdk/action.py", line 381, in _callable_executor_ output_views = self._callable(**view_args) File "/home/lisou/anaconda3/envs/qiime2-2022.8/lib/python3.8/site-packages/q2_fragment_insertion/_insertion.py", line 71, in sepp _run(str(representative_sequences.file.view(DNAFASTAFormat)), File "/home/lisou/anaconda3/envs/qiime2-2022.8/lib/python3.8/site-packages/q2_fragment_insertion/_insertion.py", line 53, in _run subprocess.run(cmd, check=True, cwd=cwd) File "/home/lisou/anaconda3/envs/qiime2-2022.8/lib/python3.8/subprocess.py", line 516, in run raise CalledProcessError(retcode, process.args, subprocess.CalledProcessError: Command '['run-sepp.sh', '/tmp/qiime2/lisou/data/b4ddb03a-b161-4ea5-8123-309e86595f69/data/dna-sequences.fasta', 'q2-fragment-insertion', '-x', '16', '-A', '1000', '-P', '5000', '-a', '/tmp/qiime2/lisou/data/e44b5e78-31e5-4a0f-9041-494bc3ca2df2/data/aligned-dna-sequences.fasta', '-t', '/tmp/qiime2/lisou/data/e44b5e78-31e5-4a0f-9041-494bc3ca2df2/data/tree.nwk', '-r', '/tmp/qiime2/lisou/data/e44b5e78-31e5-4a0f-9041-494bc3ca2df2/data/raxml-info.txt', '-b', '1']' returned non-zero exit status 1. Plugin error from fragment-insertion: Command '['run-sepp.sh', '/tmp/qiime2/lisou/data/b4ddb03a-b161-4ea5-8123-309e86595f69/data/dna-sequences.fasta', 'q2-fragment-insertion', '-x', '16', '-A', '1000', '-P', '5000', '-a', '/tmp/qiime2/lisou/data/e44b5e78-31e5-4a0f-9041-494bc3ca2df2/data/aligned-dna-sequences.fasta', '-t', '/tmp/qiime2/lisou/data/e44b5e78-31e5-4a0f-9041-494bc3ca2df2/data/tree.nwk', '-r', '/tmp/qiime2/lisou/data/e44b5e78-31e5-4a0f-9041-494bc3ca2df2/data/raxml-info.txt', '-b', '1']' returned non-zero exit status 1. See above for debug info.