{\rtf1\ansi\ansicpg1252\cocoartf2638 \cocoatextscaling0\cocoaplatform0{\fonttbl\f0\fnil\fcharset0 Menlo-Regular;} {\colortbl;\red255\green255\blue255;\red0\green0\blue0;} {\*\expandedcolortbl;;\csgray\c0;} \paperw11900\paperh16840\margl1440\margr1440\vieww11520\viewh8400\viewkind0 \pard\tx560\tx1120\tx1680\tx2240\tx2800\tx3360\tx3920\tx4480\tx5040\tx5600\tx6160\tx6720\pardirnatural\partightenfactor0 \f0\fs22 \cf2 \CocoaLigature0 (qiime2-2023.2) abcdefs-MBP:BaseCalls abcdef$ qiime cutadapt trim-paired --i-demultiplexed-sequences paired-end-demux0.qza --p-cores 3 --p-front-f GTGCCAGCMGCCGCGGTAA --p-front-r GGACTACHVGGGTWTCTAAT --o-trimmed-sequences primer-trimmed-demux0.qza --verbose\ Running external command line application. This may print messages to stdout and/or stderr.\ The commands to be run are below. These commands cannot be manually re-run as they will depend on temporary files that no longer exist.\ \ Command: cutadapt --cores 3 --error-rate 0.1 --times 1 --overlap 3 --minimum-length 1 -q 0,0 --quality-base 33 -o /var/folders/kh/zt2dzkrx2x7df59wctc6jhqr0000gn/T/q2-CasavaOneEightSingleLanePerSampleDirFmt-40l92u2s/P01-01A-M1-SHAM-H1-R1-F1R9_S1_L001_R1_001.fastq.gz -p /var/folders/kh/zt2dzkrx2x7df59wctc6jhqr0000gn/T/q2-CasavaOneEightSingleLanePerSampleDirFmt-40l92u2s/P01-01A-M1-SHAM-H1-R1-F1R9_S1_L001_R2_001.fastq.gz --front GTGCCAGCMGCCGCGGTAA -G GGACTACHVGGGTWTCTAAT /var/folders/kh/zt2dzkrx2x7df59wctc6jhqr0000gn/T/qiime2/abcdef/data/d6e36ee0-da28-4588-bc05-68643a35716c/data/P01-01A-M1-SHAM-H1-R1-F1R9_S1_L001_R1_001.fastq.gz /var/folders/kh/zt2dzkrx2x7df59wctc6jhqr0000gn/T/qiime2/abcdef/data/d6e36ee0-da28-4588-bc05-68643a35716c/data/P01-01A-M1-SHAM-H1-R1-F1R9_S1_L001_R2_001.fastq.gz\ \ This is cutadapt 4.2 with Python 3.8.16\ Command line parameters: --cores 3 --error-rate 0.1 --times 1 --overlap 3 --minimum-length 1 -q 0,0 --quality-base 33 -o /var/folders/kh/zt2dzkrx2x7df59wctc6jhqr0000gn/T/q2-CasavaOneEightSingleLanePerSampleDirFmt-40l92u2s/P01-01A-M1-SHAM-H1-R1-F1R9_S1_L001_R1_001.fastq.gz -p /var/folders/kh/zt2dzkrx2x7df59wctc6jhqr0000gn/T/q2-CasavaOneEightSingleLanePerSampleDirFmt-40l92u2s/P01-01A-M1-SHAM-H1-R1-F1R9_S1_L001_R2_001.fastq.gz --front GTGCCAGCMGCCGCGGTAA -G GGACTACHVGGGTWTCTAAT /var/folders/kh/zt2dzkrx2x7df59wctc6jhqr0000gn/T/qiime2/abcdef/data/d6e36ee0-da28-4588-bc05-68643a35716c/data/P01-01A-M1-SHAM-H1-R1-F1R9_S1_L001_R1_001.fastq.gz /var/folders/kh/zt2dzkrx2x7df59wctc6jhqr0000gn/T/qiime2/abcdef/data/d6e36ee0-da28-4588-bc05-68643a35716c/data/P01-01A-M1-SHAM-H1-R1-F1R9_S1_L001_R2_001.fastq.gz\ Processing paired-end reads on 3 cores ...\ Done 00:00:00 5,121 reads @ 77.4 \'b5s/read; 0.78 M reads/minute\ Finished in 0.414 s (80.823 \'b5s/read; 0.74 M reads/minute).\ \ === Summary ===\ \ Total read pairs processed: 5,121\ Read 1 with adapter: 5,104 (99.7%)\ Read 2 with adapter: 5,058 (98.8%)\ \ == Read fate breakdown ==\ Pairs that were too short: 0 (0.0%)\ Pairs written (passing filters): 5,121 (100.0%)\ \ Total basepairs processed: 2,570,742 bp\ Read 1: 1,285,371 bp\ Read 2: 1,285,371 bp\ Quality-trimmed: 0 bp (0.0%)\ Read 1: 0 bp\ Read 2: 0 bp\ Total written (filtered): 2,372,716 bp (92.3%)\ Read 1: 1,188,443 bp\ Read 2: 1,184,273 bp\ \ === First read: Adapter 1 ===\ \ Sequence: GTGCCAGCMGCCGCGGTAA; Type: regular 5'; Length: 19; Trimmed: 5104 times\ \ Minimum overlap: 3\ No. of allowed errors:\ 1-9 bp: 0; 10-19 bp: 1\ \ Overview of removed sequences\ length count expect max.err error counts\ 17 2 0.0 1 2\ 18 51 0.0 1 6 45\ 19 5045 0.0 1 4822 223\ 20 5 0.0 1 1 4\ 21 1 0.0 1 1\ \ \ === Second read: Adapter 2 ===\ \ Sequence: GGACTACHVGGGTWTCTAAT; Type: regular 5'; Length: 20; Trimmed: 5058 times\ \ Minimum overlap: 3\ No. of allowed errors:\ 1-9 bp: 0; 10-19 bp: 1; 20 bp: 2\ \ Overview of removed sequences\ length count expect max.err error counts\ 18 6 0.0 1 1 0 5\ 19 55 0.0 1 10 43 2\ 20 4994 0.0 2 4802 166 26\ 21 2 0.0 2 0 2\ 23 1 0.0 2 1\ \ Command: cutadapt --cores 3 --error-rate 0.1 --times 1 --overlap 3 --minimum-length 1 -q 0,0 --quality-base 33 -o /var/folders/kh/zt2dzkrx2x7df59wctc6jhqr0000gn/T/q2-CasavaOneEightSingleLanePerSampleDirFmt-40l92u2s/P01-01B-M1-SHAM-H1-R2-F1R10_S2_L001_R1_001.fastq.gz -p /var/folders/kh/zt2dzkrx2x7df59wctc6jhqr0000gn/T/q2-CasavaOneEightSingleLanePerSampleDirFmt-40l92u2s/P01-01B-M1-SHAM-H1-R2-F1R10_S2_L001_R2_001.fastq.gz --front GTGCCAGCMGCCGCGGTAA -G GGACTACHVGGGTWTCTAAT /var/folders/kh/zt2dzkrx2x7df59wctc6jhqr0000gn/T/qiime2/abcdef/data/d6e36ee0-da28-4588-bc05-68643a35716c/data/P01-01B-M1-SHAM-H1-R2-F1R10_S2_L001_R1_001.fastq.gz /var/folders/kh/zt2dzkrx2x7df59wctc6jhqr0000gn/T/qiime2/abcdef/data/d6e36ee0-da28-4588-bc05-68643a35716c/data/P01-01B-M1-SHAM-H1-R2-F1R10_S2_L001_R2_001.fastq.gz\ \ This is cutadapt 4.2 with Python 3.8.16\ Command line parameters: --cores 3 --error-rate 0.1 --times 1 --overlap 3 --minimum-length 1 -q 0,0 --quality-base 33 -o /var/folders/kh/zt2dzkrx2x7df59wctc6jhqr0000gn/T/q2-CasavaOneEightSingleLanePerSampleDirFmt-40l92u2s/P01-01B-M1-SHAM-H1-R2-F1R10_S2_L001_R1_001.fastq.gz -p /var/folders/kh/zt2dzkrx2x7df59wctc6jhqr0000gn/T/q2-CasavaOneEightSingleLanePerSampleDirFmt-40l92u2s/P01-01B-M1-SHAM-H1-R2-F1R10_S2_L001_R2_001.fastq.gz --front GTGCCAGCMGCCGCGGTAA -G GGACTACHVGGGTWTCTAAT /var/folders/kh/zt2dzkrx2x7df59wctc6jhqr0000gn/T/qiime2/abcdef/data/d6e36ee0-da28-4588-bc05-68643a35716c/data/P01-01B-M1-SHAM-H1-R2-F1R10_S2_L001_R1_001.fastq.gz /var/folders/kh/zt2dzkrx2x7df59wctc6jhqr0000gn/T/qiime2/abcdef/data/d6e36ee0-da28-4588-bc05-68643a35716c/data/P01-01B-M1-SHAM-H1-R2-F1R10_S2_L001_R2_001.fastq.gz\ Processing paired-end reads on 3 cores ...\ Done 00:00:00 1,140 reads @ 176.9 \'b5s/read; 0.34 M reads/minute\ Finished in 0.214 s (187.944 \'b5s/read; 0.32 M reads/minute).\ \ === Summary ===\ \ Total read pairs processed: 1,140\ Read 1 with adapter: 1,138 (99.8%)\ Read 2 with adapter: 1,120 (98.2%)\ \ == Read fate breakdown ==\ Pairs that were too short: 0 (0.0%)\ Pairs written (passing filters): 1,140 (100.0%)\ \ Total basepairs processed: 572,280 bp\ Read 1: 286,140 bp\ Read 2: 286,140 bp\ Quality-trimmed: 0 bp (0.0%)\ Read 1: 0 bp\ Read 2: 0 bp\ Total written (filtered): 527,123 bp (92.1%)\ Read 1: 264,517 bp\ Read 2: 262,606 bp\ \ === First read: Adapter 1 ===\ \ Sequence: GTGCCAGCMGCCGCGGTAA; Type: regular 5'; Length: 19; Trimmed: 1138 times\ \ Minimum overlap: 3\ No. of allowed errors:\ 1-9 bp: 0; 10-19 bp: 1\ \ Overview of removed sequences\ length count expect max.err error counts\ 18 15 0.0 1 0 15\ 19 1116 0.0 1 1074 42\ 20 2 0.0 1 0 2\ 21 1 0.0 1 1\ 22 4 0.0 1 4\ \ \ === Second read: Adapter 2 ===\ \ Sequence: GGACTACHVGGGTWTCTAAT; Type: regular 5'; Length: 20; Trimmed: 1120 times\ \ Minimum overlap: 3\ No. of allowed errors:\ 1-9 bp: 0; 10-19 bp: 1; 20 bp: 2\ \ Overview of removed sequences\ length count expect max.err error counts\ 19 2 0.0 1 2\ 20 20 0.0 2 3 17\ 21 1097 0.0 2 1060 32 5\ 59 1 0.0 2 0 1\ \ Command: cutadapt --cores 3 --error-rate 0.1 --times 1 --overlap 3 --minimum-length 1 -q 0,0 --quality-base 33 -o /var/folders/kh/zt2dzkrx2x7df59wctc6jhqr0000gn/T/q2-CasavaOneEightSingleLanePerSampleDirFmt-40l92u2s/P01-01C-M1-SHAM-H2-R1-F1R11_S3_L001_R1_001.fastq.gz -p /var/folders/kh/zt2dzkrx2x7df59wctc6jhqr0000gn/T/q2-CasavaOneEightSingleLanePerSampleDirFmt-40l92u2s/P01-01C-M1-SHAM-H2-R1-F1R11_S3_L001_R2_001.fastq.gz --front GTGCCAGCMGCCGCGGTAA -G GGACTACHVGGGTWTCTAAT /var/folders/kh/zt2dzkrx2x7df59wctc6jhqr0000gn/T/qiime2/abcdef/data/d6e36ee0-da28-4588-bc05-68643a35716c/data/P01-01C-M1-SHAM-H2-R1-F1R11_S3_L001_R1_001.fastq.gz /var/folders/kh/zt2dzkrx2x7df59wctc6jhqr0000gn/T/qiime2/abcdef/data/d6e36ee0-da28-4588-bc05-68643a35716c/data/P01-01C-M1-SHAM-H2-R1-F1R11_S3_L001_R2_001.fastq.gz\ \ This is cutadapt 4.2 with Python 3.8.16\ Command line parameters: --cores 3 --error-rate 0.1 --times 1 --overlap 3 --minimum-length 1 -q 0,0 --quality-base 33 -o /var/folders/kh/zt2dzkrx2x7df59wctc6jhqr0000gn/T/q2-CasavaOneEightSingleLanePerSampleDirFmt-40l92u2s/P01-01C-M1-SHAM-H2-R1-F1R11_S3_L001_R1_001.fastq.gz -p /var/folders/kh/zt2dzkrx2x7df59wctc6jhqr0000gn/T/q2-CasavaOneEightSingleLanePerSampleDirFmt-40l92u2s/P01-01C-M1-SHAM-H2-R1-F1R11_S3_L001_R2_001.fastq.gz --front GTGCCAGCMGCCGCGGTAA -G GGACTACHVGGGTWTCTAAT /var/folders/kh/zt2dzkrx2x7df59wctc6jhqr0000gn/T/qiime2/abcdef/data/d6e36ee0-da28-4588-bc05-68643a35716c/data/P01-01C-M1-SHAM-H2-R1-F1R11_S3_L001_R1_001.fastq.gz /var/folders/kh/zt2dzkrx2x7df59wctc6jhqr0000gn/T/qiime2/abcdef/data/d6e36ee0-da28-4588-bc05-68643a35716c/data/P01-01C-M1-SHAM-H2-R1-F1R11_S3_L001_R2_001.fastq.gz\ Processing paired-end reads on 3 cores ...\ Done 00:00:00 252 reads @ 716.3 \'b5s/read; 0.08 M reads/minute\ Finished in 0.194 s (769.247 \'b5s/read; 0.08 M reads/minute).\ \ === Summary ===\ \ Total read pairs processed: 252\ Read 1 with adapter: 251 (99.6%)\ Read 2 with adapter: 249 (98.8%)\ \ == Read fate breakdown ==\ Pairs that were too short: 0 (0.0%)\ Pairs written (passing filters): 252 (100.0%)\ \ Total basepairs processed: 126,504 bp\ Read 1: 63,252 bp\ Read 2: 63,252 bp\ Quality-trimmed: 0 bp (0.0%)\ Read 1: 0 bp\ Read 2: 0 bp\ Total written (filtered): 116,238 bp (91.9%)\ Read 1: 58,461 bp\ Read 2: 57,777 bp\ \ === First read: Adapter 1 ===\ \ Sequence: GTGCCAGCMGCCGCGGTAA; Type: regular 5'; Length: 19; Trimmed: 251 times\ \ Minimum overlap: 3\ No. of allowed errors:\ 1-9 bp: 0; 10-19 bp: 1\ \ Overview of removed sequences\ length count expect max.err error counts\ 18 4 0.0 1 0 4\ 19 237 0.0 1 230 7\ 21 4 0.0 1 2 2\ 22 6 0.0 1 6\ \ \ === Second read: Adapter 2 ===\ \ Sequence: GGACTACHVGGGTWTCTAAT; Type: regular 5'; Length: 20; Trimmed: 249 times\ \ Minimum overlap: 3\ No. of allowed errors:\ 1-9 bp: 0; 10-19 bp: 1; 20 bp: 2\ \ Overview of removed sequences\ length count expect max.err error counts\ 21 3 0.0 2 1 2\ 22 246 0.0 2 235 8 3\ \ Command: cutadapt --cores 3 --error-rate 0.1 --times 1 --overlap 3 --minimum-length 1 -q 0,0 --quality-base 33 -o /var/folders/kh/zt2dzkrx2x7df59wctc6jhqr0000gn/T/q2-CasavaOneEightSingleLanePerSampleDirFmt-40l92u2s/P01-01D-M1-SHAM-H2-R2-F1R12_S4_L001_R1_001.fastq.gz -p /var/folders/kh/zt2dzkrx2x7df59wctc6jhqr0000gn/T/q2-CasavaOneEightSingleLanePerSampleDirFmt-40l92u2s/P01-01D-M1-SHAM-H2-R2-F1R12_S4_L001_R2_001.fastq.gz --front GTGCCAGCMGCCGCGGTAA -G GGACTACHVGGGTWTCTAAT /var/folders/kh/zt2dzkrx2x7df59wctc6jhqr0000gn/T/qiime2/abcdef/data/d6e36ee0-da28-4588-bc05-68643a35716c/data/P01-01D-M1-SHAM-H2-R2-F1R12_S4_L001_R1_001.fastq.gz /var/folders/kh/zt2dzkrx2x7df59wctc6jhqr0000gn/T/qiime2/abcdef/data/d6e36ee0-da28-4588-bc05-68643a35716c/data/P01-01D-M1-SHAM-H2-R2-F1R12_S4_L001_R2_001.fastq.gz\ \ This is cutadapt 4.2 with Python 3.8.16\ Command line parameters: --cores 3 --error-rate 0.1 --times 1 --overlap 3 --minimum-length 1 -q 0,0 --quality-base 33 -o /var/folders/kh/zt2dzkrx2x7df59wctc6jhqr0000gn/T/q2-CasavaOneEightSingleLanePerSampleDirFmt-40l92u2s/P01-01D-M1-SHAM-H2-R2-F1R12_S4_L001_R1_001.fastq.gz -p /var/folders/kh/zt2dzkrx2x7df59wctc6jhqr0000gn/T/q2-CasavaOneEightSingleLanePerSampleDirFmt-40l92u2s/P01-01D-M1-SHAM-H2-R2-F1R12_S4_L001_R2_001.fastq.gz --front GTGCCAGCMGCCGCGGTAA -G GGACTACHVGGGTWTCTAAT /var/folders/kh/zt2dzkrx2x7df59wctc6jhqr0000gn/T/qiime2/abcdef/data/d6e36ee0-da28-4588-bc05-68643a35716c/data/P01-01D-M1-SHAM-H2-R2-F1R12_S4_L001_R1_001.fastq.gz /var/folders/kh/zt2dzkrx2x7df59wctc6jhqr0000gn/T/qiime2/abcdef/data/d6e36ee0-da28-4588-bc05-68643a35716c/data/P01-01D-M1-SHAM-H2-R2-F1R12_S4_L001_R2_001.fastq.gz\ Processing paired-end reads on 3 cores ...\ Done 00:00:00 128 reads @ 1457.0 \'b5s/read; 0.04 M reads/minute\ Finished in 0.196 s (1529.695 \'b5s/read; 0.04 M reads/minute).\ \ === Summary ===\ \ Total read pairs processed: 128\ Read 1 with adapter: 128 (100.0%)\ Read 2 with adapter: 125 (97.7%)\ \ == Read fate breakdown ==\ Pairs that were too short: 0 (0.0%)\ Pairs written (passing filters): 128 (100.0%)\ \ Total basepairs processed: 64,256 bp\ Read 1: 32,128 bp\ Read 2: 32,128 bp\ Quality-trimmed: 0 bp (0.0%)\ Read 1: 0 bp\ Read 2: 0 bp\ Total written (filtered): 58,947 bp (91.7%)\ Read 1: 29,689 bp\ Read 2: 29,258 bp\ \ === First read: Adapter 1 ===\ \ Sequence: GTGCCAGCMGCCGCGGTAA; Type: regular 5'; Length: 19; Trimmed: 128 times\ \ Minimum overlap: 3\ No. of allowed errors:\ 1-9 bp: 0; 10-19 bp: 1\ \ Overview of removed sequences\ length count expect max.err error counts\ 18 2 0.0 1 0 2\ 19 122 0.0 1 118 4\ 21 3 0.0 1 3\ 22 1 0.0 1 1\ \ \ === Second read: Adapter 2 ===\ \ Sequence: GGACTACHVGGGTWTCTAAT; Type: regular 5'; Length: 20; Trimmed: 125 times\ \ Minimum overlap: 3\ No. of allowed errors:\ 1-9 bp: 0; 10-19 bp: 1; 20 bp: 2\ \ Overview of removed sequences\ length count expect max.err error counts\ 20 2 0.0 2 2\ 23 122 0.0 2 112 9 1\ 24 1 0.0 2 0 1\ \ Command: cutadapt --cores 3 --error-rate 0.1 --times 1 --overlap 3 --minimum-length 1 -q 0,0 --quality-base 33 -o /var/folders/kh/zt2dzkrx2x7df59wctc6jhqr0000gn/T/q2-CasavaOneEightSingleLanePerSampleDirFmt-40l92u2s/P01-01E-M2-SHAM-H1-R1-F1R13_S5_L001_R1_001.fastq.gz -p /var/folders/kh/zt2dzkrx2x7df59wctc6jhqr0000gn/T/q2-CasavaOneEightSingleLanePerSampleDirFmt-40l92u2s/P01-01E-M2-SHAM-H1-R1-F1R13_S5_L001_R2_001.fastq.gz --front GTGCCAGCMGCCGCGGTAA -G GGACTACHVGGGTWTCTAAT /var/folders/kh/zt2dzkrx2x7df59wctc6jhqr0000gn/T/qiime2/abcdef/data/d6e36ee0-da28-4588-bc05-68643a35716c/data/P01-01E-M2-SHAM-H1-R1-F1R13_S5_L001_R1_001.fastq.gz /var/folders/kh/zt2dzkrx2x7df59wctc6jhqr0000gn/T/qiime2/abcdef/data/d6e36ee0-da28-4588-bc05-68643a35716c/data/P01-01E-M2-SHAM-H1-R1-F1R13_S5_L001_R2_001.fastq.gz\ \ This is cutadapt 4.2 with Python 3.8.16\ Command line parameters: --cores 3 --error-rate 0.1 --times 1 --overlap 3 --minimum-length 1 -q 0,0 --quality-base 33 -o /var/folders/kh/zt2dzkrx2x7df59wctc6jhqr0000gn/T/q2-CasavaOneEightSingleLanePerSampleDirFmt-40l92u2s/P01-01E-M2-SHAM-H1-R1-F1R13_S5_L001_R1_001.fastq.gz -p /var/folders/kh/zt2dzkrx2x7df59wctc6jhqr0000gn/T/q2-CasavaOneEightSingleLanePerSampleDirFmt-40l92u2s/P01-01E-M2-SHAM-H1-R1-F1R13_S5_L001_R2_001.fastq.gz --front GTGCCAGCMGCCGCGGTAA -G GGACTACHVGGGTWTCTAAT /var/folders/kh/zt2dzkrx2x7df59wctc6jhqr0000gn/T/qiime2/abcdef/data/d6e36ee0-da28-4588-bc05-68643a35716c/data/P01-01E-M2-SHAM-H1-R1-F1R13_S5_L001_R1_001.fastq.gz /var/folders/kh/zt2dzkrx2x7df59wctc6jhqr0000gn/T/qiime2/abcdef/data/d6e36ee0-da28-4588-bc05-68643a35716c/data/P01-01E-M2-SHAM-H1-R1-F1R13_S5_L001_R2_001.fastq.gz\ Processing paired-end reads on 3 cores ...\ Done 00:00:00 1,130 reads @ 203.2 \'b5s/read; 0.30 M reads/minute\ Finished in 0.243 s (215.381 \'b5s/read; 0.28 M reads/minute).\ \ === Summary ===\ \ Total read pairs processed: 1,130\ Read 1 with adapter: 1,122 (99.3%)\ Read 2 with adapter: 1,122 (99.3%)\ \ == Read fate breakdown ==\ Pairs that were too short: 0 (0.0%)\ Pairs written (passing filters): 1,130 (100.0%)\ \ Total basepairs processed: 567,260 bp\ Read 1: 283,630 bp\ Read 2: 283,630 bp\ Quality-trimmed: 0 bp (0.0%)\ Read 1: 0 bp\ Read 2: 0 bp\ Total written (filtered): 523,504 bp (92.3%)\ Read 1: 262,305 bp\ Read 2: 261,199 bp\ \ === First read: Adapter 1 ===\ \ Sequence: GTGCCAGCMGCCGCGGTAA; Type: regular 5'; Length: 19; Trimmed: 1122 times\ \ Minimum overlap: 3\ No. of allowed errors:\ 1-9 bp: 0; 10-19 bp: 1\ \ Overview of removed sequences\ length count expect max.err error counts\ 17 1 0.0 1 1\ 18 10 0.0 1 0 10\ 19 1104 0.0 1 1062 42\ 20 1 0.0 1 0 1\ 22 6 0.0 1 6\ \ \ === Second read: Adapter 2 ===\ \ Sequence: GGACTACHVGGGTWTCTAAT; Type: regular 5'; Length: 20; Trimmed: 1122 times\ \ Minimum overlap: 3\ No. of allowed errors:\ 1-9 bp: 0; 10-19 bp: 1; 20 bp: 2\ \ Overview of removed sequences\ length count expect max.err error counts\ 18 1 0.0 1 0 0 1\ 19 12 0.0 1 1 11\ 20 1104 0.0 2 1056 40 8\ 21 5 0.0 2 1 4\ \ Command: cutadapt --cores 3 --error-rate 0.1 --times 1 --overlap 3 --minimum-length 1 -q 0,0 --quality-base 33 -o /var/folders/kh/zt2dzkrx2x7df59wctc6jhqr0000gn/T/q2-CasavaOneEightSingleLanePerSampleDirFmt-40l92u2s/P01-01F-M2-SHAM-H1-R2-F1R14_S6_L001_R1_001.fastq.gz -p /var/folders/kh/zt2dzkrx2x7df59wctc6jhqr0000gn/T/q2-CasavaOneEightSingleLanePerSampleDirFmt-40l92u2s/P01-01F-M2-SHAM-H1-R2-F1R14_S6_L001_R2_001.fastq.gz --front GTGCCAGCMGCCGCGGTAA -G GGACTACHVGGGTWTCTAAT /var/folders/kh/zt2dzkrx2x7df59wctc6jhqr0000gn/T/qiime2/abcdef/data/d6e36ee0-da28-4588-bc05-68643a35716c/data/P01-01F-M2-SHAM-H1-R2-F1R14_S6_L001_R1_001.fastq.gz /var/folders/kh/zt2dzkrx2x7df59wctc6jhqr0000gn/T/qiime2/abcdef/data/d6e36ee0-da28-4588-bc05-68643a35716c/data/P01-01F-M2-SHAM-H1-R2-F1R14_S6_L001_R2_001.fastq.gz\ \ This is cutadapt 4.2 with Python 3.8.16\ Command line parameters: --cores 3 --error-rate 0.1 --times 1 --overlap 3 --minimum-length 1 -q 0,0 --quality-base 33 -o /var/folders/kh/zt2dzkrx2x7df59wctc6jhqr0000gn/T/q2-CasavaOneEightSingleLanePerSampleDirFmt-40l92u2s/P01-01F-M2-SHAM-H1-R2-F1R14_S6_L001_R1_001.fastq.gz -p /var/folders/kh/zt2dzkrx2x7df59wctc6jhqr0000gn/T/q2-CasavaOneEightSingleLanePerSampleDirFmt-40l92u2s/P01-01F-M2-SHAM-H1-R2-F1R14_S6_L001_R2_001.fastq.gz --front GTGCCAGCMGCCGCGGTAA -G GGACTACHVGGGTWTCTAAT /var/folders/kh/zt2dzkrx2x7df59wctc6jhqr0000gn/T/qiime2/abcdef/data/d6e36ee0-da28-4588-bc05-68643a35716c/data/P01-01F-M2-SHAM-H1-R2-F1R14_S6_L001_R1_001.fastq.gz /var/folders/kh/zt2dzkrx2x7df59wctc6jhqr0000gn/T/qiime2/abcdef/data/d6e36ee0-da28-4588-bc05-68643a35716c/data/P01-01F-M2-SHAM-H1-R2-F1R14_S6_L001_R2_001.fastq.gz\ Processing paired-end reads on 3 cores ...\ Done 00:00:00 54 reads @ 3271.8 \'b5s/read; 0.02 M reads/minute\ Finished in 0.182 s (3365.150 \'b5s/read; 0.02 M reads/minute).\ \ === Summary ===\ \ Total read pairs processed: 54\ Read 1 with adapter: 53 (98.1%)\ Read 2 with adapter: 54 (100.0%)\ \ == Read fate breakdown ==\ Pairs that were too short: 0 (0.0%)\ Pairs written (passing filters): 54 (100.0%)\ \ Total basepairs processed: 27,108 bp\ Read 1: 13,554 bp\ Read 2: 13,554 bp\ Quality-trimmed: 0 bp (0.0%)\ Read 1: 0 bp\ Read 2: 0 bp\ Total written (filtered): 24,943 bp (92.0%)\ Read 1: 12,519 bp\ Read 2: 12,424 bp\ \ === First read: Adapter 1 ===\ \ Sequence: GTGCCAGCMGCCGCGGTAA; Type: regular 5'; Length: 19; Trimmed: 53 times\ \ Minimum overlap: 3\ No. of allowed errors:\ 1-9 bp: 0; 10-19 bp: 1\ \ Overview of removed sequences\ length count expect max.err error counts\ 19 41 0.0 1 40 1\ 21 8 0.0 1 8\ 22 4 0.0 1 3 1\ \ \ === Second read: Adapter 2 ===\ \ Sequence: GGACTACHVGGGTWTCTAAT; Type: regular 5'; Length: 20; Trimmed: 54 times\ \ Minimum overlap: 3\ No. of allowed errors:\ 1-9 bp: 0; 10-19 bp: 1; 20 bp: 2\ \ Overview of removed sequences\ length count expect max.err error counts\ 20 4 0.0 2 3 1\ 21 50 0.0 2 50\ \ Command: cutadapt --cores 3 --error-rate 0.1 --times 1 --overlap 3 --minimum-length 1 -q 0,0 --quality-base 33 -o /var/folders/kh/zt2dzkrx2x7df59wctc6jhqr0000gn/T/q2-CasavaOneEightSingleLanePerSampleDirFmt-40l92u2s/P01-01G-M2-SHAM-H2-R1-F1R15_S7_L001_R1_001.fastq.gz -p /var/folders/kh/zt2dzkrx2x7df59wctc6jhqr0000gn/T/q2-CasavaOneEightSingleLanePerSampleDirFmt-40l92u2s/P01-01G-M2-SHAM-H2-R1-F1R15_S7_L001_R2_001.fastq.gz --front GTGCCAGCMGCCGCGGTAA -G GGACTACHVGGGTWTCTAAT /var/folders/kh/zt2dzkrx2x7df59wctc6jhqr0000gn/T/qiime2/abcdef/data/d6e36ee0-da28-4588-bc05-68643a35716c/data/P01-01G-M2-SHAM-H2-R1-F1R15_S7_L001_R1_001.fastq.gz /var/folders/kh/zt2dzkrx2x7df59wctc6jhqr0000gn/T/qiime2/abcdef/data/d6e36ee0-da28-4588-bc05-68643a35716c/data/P01-01G-M2-SHAM-H2-R1-F1R15_S7_L001_R2_001.fastq.gz\ \ This is cutadapt 4.2 with Python 3.8.16\ Command line parameters: --cores 3 --error-rate 0.1 --times 1 --overlap 3 --minimum-length 1 -q 0,0 --quality-base 33 -o /var/folders/kh/zt2dzkrx2x7df59wctc6jhqr0000gn/T/q2-CasavaOneEightSingleLanePerSampleDirFmt-40l92u2s/P01-01G-M2-SHAM-H2-R1-F1R15_S7_L001_R1_001.fastq.gz -p /var/folders/kh/zt2dzkrx2x7df59wctc6jhqr0000gn/T/q2-CasavaOneEightSingleLanePerSampleDirFmt-40l92u2s/P01-01G-M2-SHAM-H2-R1-F1R15_S7_L001_R2_001.fastq.gz --front GTGCCAGCMGCCGCGGTAA -G GGACTACHVGGGTWTCTAAT /var/folders/kh/zt2dzkrx2x7df59wctc6jhqr0000gn/T/qiime2/abcdef/data/d6e36ee0-da28-4588-bc05-68643a35716c/data/P01-01G-M2-SHAM-H2-R1-F1R15_S7_L001_R1_001.fastq.gz /var/folders/kh/zt2dzkrx2x7df59wctc6jhqr0000gn/T/qiime2/abcdef/data/d6e36ee0-da28-4588-bc05-68643a35716c/data/P01-01G-M2-SHAM-H2-R1-F1R15_S7_L001_R2_001.fastq.gz\ Processing paired-end reads on 3 cores ...\ Done 00:00:00 56 reads @ 2701.5 \'b5s/read; 0.02 M reads/minute\ Finished in 0.157 s (2797.374 \'b5s/read; 0.02 M reads/minute).\ \ === Summary ===\ \ Total read pairs processed: 56\ Read 1 with adapter: 56 (100.0%)\ Read 2 with adapter: 53 (94.6%)\ \ == Read fate breakdown ==\ Pairs that were too short: 0 (0.0%)\ Pairs written (passing filters): 56 (100.0%)\ \ Total basepairs processed: 28,112 bp\ Read 1: 14,056 bp\ Read 2: 14,056 bp\ Quality-trimmed: 0 bp (0.0%)\ Read 1: 0 bp\ Read 2: 0 bp\ Total written (filtered): 25,868 bp (92.0%)\ Read 1: 12,973 bp\ Read 2: 12,895 bp\ \ === First read: Adapter 1 ===\ \ Sequence: GTGCCAGCMGCCGCGGTAA; Type: regular 5'; Length: 19; Trimmed: 56 times\ \ Minimum overlap: 3\ No. of allowed errors:\ 1-9 bp: 0; 10-19 bp: 1\ \ Overview of removed sequences\ length count expect max.err error counts\ 19 49 0.0 1 48 1\ 21 2 0.0 1 2\ 22 5 0.0 1 5\ \ \ === Second read: Adapter 2 ===\ \ Sequence: GGACTACHVGGGTWTCTAAT; Type: regular 5'; Length: 20; Trimmed: 53 times\ \ Minimum overlap: 3\ No. of allowed errors:\ 1-9 bp: 0; 10-19 bp: 1; 20 bp: 2\ \ Overview of removed sequences\ length count expect max.err error counts\ 20 2 0.0 2 0 2\ 21 1 0.0 2 0 1\ 22 50 0.0 2 49 1\ \ Command: cutadapt --cores 3 --error-rate 0.1 --times 1 --overlap 3 --minimum-length 1 -q 0,0 --quality-base 33 -o /var/folders/kh/zt2dzkrx2x7df59wctc6jhqr0000gn/T/q2-CasavaOneEightSingleLanePerSampleDirFmt-40l92u2s/P01-01H-M2-SHAM-H2-R2-F1R16_S8_L001_R1_001.fastq.gz -p /var/folders/kh/zt2dzkrx2x7df59wctc6jhqr0000gn/T/q2-CasavaOneEightSingleLanePerSampleDirFmt-40l92u2s/P01-01H-M2-SHAM-H2-R2-F1R16_S8_L001_R2_001.fastq.gz --front GTGCCAGCMGCCGCGGTAA -G GGACTACHVGGGTWTCTAAT /var/folders/kh/zt2dzkrx2x7df59wctc6jhqr0000gn/T/qiime2/abcdef/data/d6e36ee0-da28-4588-bc05-68643a35716c/data/P01-01H-M2-SHAM-H2-R2-F1R16_S8_L001_R1_001.fastq.gz /var/folders/kh/zt2dzkrx2x7df59wctc6jhqr0000gn/T/qiime2/abcdef/data/d6e36ee0-da28-4588-bc05-68643a35716c/data/P01-01H-M2-SHAM-H2-R2-F1R16_S8_L001_R2_001.fastq.gz\ \ This is cutadapt 4.2 with Python 3.8.16\ Command line parameters: --cores 3 --error-rate 0.1 --times 1 --overlap 3 --minimum-length 1 -q 0,0 --quality-base 33 -o /var/folders/kh/zt2dzkrx2x7df59wctc6jhqr0000gn/T/q2-CasavaOneEightSingleLanePerSampleDirFmt-40l92u2s/P01-01H-M2-SHAM-H2-R2-F1R16_S8_L001_R1_001.fastq.gz -p /var/folders/kh/zt2dzkrx2x7df59wctc6jhqr0000gn/T/q2-CasavaOneEightSingleLanePerSampleDirFmt-40l92u2s/P01-01H-M2-SHAM-H2-R2-F1R16_S8_L001_R2_001.fastq.gz --front GTGCCAGCMGCCGCGGTAA -G GGACTACHVGGGTWTCTAAT /var/folders/kh/zt2dzkrx2x7df59wctc6jhqr0000gn/T/qiime2/abcdef/data/d6e36ee0-da28-4588-bc05-68643a35716c/data/P01-01H-M2-SHAM-H2-R2-F1R16_S8_L001_R1_001.fastq.gz /var/folders/kh/zt2dzkrx2x7df59wctc6jhqr0000gn/T/qiime2/abcdef/data/d6e36ee0-da28-4588-bc05-68643a35716c/data/P01-01H-M2-SHAM-H2-R2-F1R16_S8_L001_R2_001.fastq.gz\ Processing paired-end reads on 3 cores ...\ Done 00:00:00 21 reads @ 6918.9 \'b5s/read; 0.01 M reads/minute\ Finished in 0.149 s (7108.291 \'b5s/read; 0.01 M reads/minute).\ \ === Summary ===\ \ Total read pairs processed: 21\ Read 1 with adapter: 21 (100.0%)\ Read 2 with adapter: 20 (95.2%)\ \ == Read fate breakdown ==\ Pairs that were too short: 0 (0.0%)\ Pairs written (passing filters): 21 (100.0%)\ \ Total basepairs processed: 10,542 bp\ Read 1: 5,271 bp\ Read 2: 5,271 bp\ Quality-trimmed: 0 bp (0.0%)\ Read 1: 0 bp\ Read 2: 0 bp\ Total written (filtered): 9,657 bp (91.6%)\ Read 1: 4,844 bp\ Read 2: 4,813 bp\ \ === First read: Adapter 1 ===\ \ Sequence: GTGCCAGCMGCCGCGGTAA; Type: regular 5'; Length: 19; Trimmed: 21 times\ \ Minimum overlap: 3\ No. of allowed errors:\ 1-9 bp: 0; 10-19 bp: 1\ \ Overview of removed sequences\ length count expect max.err error counts\ 19 11 0.0 1 11\ 21 2 0.0 1 2\ 22 8 0.0 1 7 1\ \ \ === Second read: Adapter 2 ===\ \ Sequence: GGACTACHVGGGTWTCTAAT; Type: regular 5'; Length: 20; Trimmed: 20 times\ \ Minimum overlap: 3\ No. of allowed errors:\ 1-9 bp: 0; 10-19 bp: 1; 20 bp: 2\ \ Overview of removed sequences\ length count expect max.err error counts\ 21 1 0.0 2 0 1\ 23 19 0.0 2 19\ \ Command: cutadapt --cores 3 --error-rate 0.1 --times 1 --overlap 3 --minimum-length 1 -q 0,0 --quality-base 33 -o /var/folders/kh/zt2dzkrx2x7df59wctc6jhqr0000gn/T/q2-CasavaOneEightSingleLanePerSampleDirFmt-40l92u2s/P01-02A-M3-SHAM-H1-R1-F2R9_S9_L001_R1_001.fastq.gz -p /var/folders/kh/zt2dzkrx2x7df59wctc6jhqr0000gn/T/q2-CasavaOneEightSingleLanePerSampleDirFmt-40l92u2s/P01-02A-M3-SHAM-H1-R1-F2R9_S9_L001_R2_001.fastq.gz --front GTGCCAGCMGCCGCGGTAA -G GGACTACHVGGGTWTCTAAT /var/folders/kh/zt2dzkrx2x7df59wctc6jhqr0000gn/T/qiime2/abcdef/data/d6e36ee0-da28-4588-bc05-68643a35716c/data/P01-02A-M3-SHAM-H1-R1-F2R9_S9_L001_R1_001.fastq.gz /var/folders/kh/zt2dzkrx2x7df59wctc6jhqr0000gn/T/qiime2/abcdef/data/d6e36ee0-da28-4588-bc05-68643a35716c/data/P01-02A-M3-SHAM-H1-R1-F2R9_S9_L001_R2_001.fastq.gz\ \ This is cutadapt 4.2 with Python 3.8.16\ Command line parameters: --cores 3 --error-rate 0.1 --times 1 --overlap 3 --minimum-length 1 -q 0,0 --quality-base 33 -o /var/folders/kh/zt2dzkrx2x7df59wctc6jhqr0000gn/T/q2-CasavaOneEightSingleLanePerSampleDirFmt-40l92u2s/P01-02A-M3-SHAM-H1-R1-F2R9_S9_L001_R1_001.fastq.gz -p /var/folders/kh/zt2dzkrx2x7df59wctc6jhqr0000gn/T/q2-CasavaOneEightSingleLanePerSampleDirFmt-40l92u2s/P01-02A-M3-SHAM-H1-R1-F2R9_S9_L001_R2_001.fastq.gz --front GTGCCAGCMGCCGCGGTAA -G GGACTACHVGGGTWTCTAAT /var/folders/kh/zt2dzkrx2x7df59wctc6jhqr0000gn/T/qiime2/abcdef/data/d6e36ee0-da28-4588-bc05-68643a35716c/data/P01-02A-M3-SHAM-H1-R1-F2R9_S9_L001_R1_001.fastq.gz /var/folders/kh/zt2dzkrx2x7df59wctc6jhqr0000gn/T/qiime2/abcdef/data/d6e36ee0-da28-4588-bc05-68643a35716c/data/P01-02A-M3-SHAM-H1-R1-F2R9_S9_L001_R2_001.fastq.gz\ Processing paired-end reads on 3 cores ...\ Done 00:00:00 119 reads @ 1382.2 \'b5s/read; 0.04 M reads/minute\ Finished in 0.176 s (1480.473 \'b5s/read; 0.04 M reads/minute).\ \ === Summary ===\ \ Total read pairs processed: 119\ Read 1 with adapter: 118 (99.2%)\ Read 2 with adapter: 117 (98.3%)\ \ == Read fate breakdown ==\ Pairs that were too short: 0 (0.0%)\ Pairs written (passing filters): 119 (100.0%)\ \ Total basepairs processed: 59,738 bp\ Read 1: 29,869 bp\ Read 2: 29,869 bp\ Quality-trimmed: 0 bp (0.0%)\ Read 1: 0 bp\ Read 2: 0 bp\ Total written (filtered): 55,038 bp (92.1%)\ Read 1: 27,509 bp\ Read 2: 27,529 bp\ \ === First read: Adapter 1 ===\ \ Sequence: GTGCCAGCMGCCGCGGTAA; Type: regular 5'; Length: 19; Trimmed: 118 times\ \ Minimum overlap: 3\ No. of allowed errors:\ 1-9 bp: 0; 10-19 bp: 1\ \ Overview of removed sequences\ length count expect max.err error counts\ 19 2 0.0 1 2\ 20 114 0.0 1 109 5\ 21 2 0.0 1 1 1\ \ \ === Second read: Adapter 2 ===\ \ Sequence: GGACTACHVGGGTWTCTAAT; Type: regular 5'; Length: 20; Trimmed: 117 times\ \ Minimum overlap: 3\ No. of allowed errors:\ 1-9 bp: 0; 10-19 bp: 1; 20 bp: 2\ \ Overview of removed sequences\ length count expect max.err error counts\ 20 117 0.0 2 113 2 2\ \ Command: cutadapt --cores 3 --error-rate 0.1 --times 1 --overlap 3 --minimum-length 1 -q 0,0 --quality-base 33 -o /var/folders/kh/zt2dzkrx2x7df59wctc6jhqr0000gn/T/q2-CasavaOneEightSingleLanePerSampleDirFmt-40l92u2s/P01-02B-M3-SHAM-H1-R2-F2R10_S10_L001_R1_001.fastq.gz -p /var/folders/kh/zt2dzkrx2x7df59wctc6jhqr0000gn/T/q2-CasavaOneEightSingleLanePerSampleDirFmt-40l92u2s/P01-02B-M3-SHAM-H1-R2-F2R10_S10_L001_R2_001.fastq.gz --front GTGCCAGCMGCCGCGGTAA -G GGACTACHVGGGTWTCTAAT /var/folders/kh/zt2dzkrx2x7df59wctc6jhqr0000gn/T/qiime2/abcdef/data/d6e36ee0-da28-4588-bc05-68643a35716c/data/P01-02B-M3-SHAM-H1-R2-F2R10_S10_L001_R1_001.fastq.gz /var/folders/kh/zt2dzkrx2x7df59wctc6jhqr0000gn/T/qiime2/abcdef/data/d6e36ee0-da28-4588-bc05-68643a35716c/data/P01-02B-M3-SHAM-H1-R2-F2R10_S10_L001_R2_001.fastq.gz\ \ This is cutadapt 4.2 with Python 3.8.16\ Command line parameters: --cores 3 --error-rate 0.1 --times 1 --overlap 3 --minimum-length 1 -q 0,0 --quality-base 33 -o /var/folders/kh/zt2dzkrx2x7df59wctc6jhqr0000gn/T/q2-CasavaOneEightSingleLanePerSampleDirFmt-40l92u2s/P01-02B-M3-SHAM-H1-R2-F2R10_S10_L001_R1_001.fastq.gz -p /var/folders/kh/zt2dzkrx2x7df59wctc6jhqr0000gn/T/q2-CasavaOneEightSingleLanePerSampleDirFmt-40l92u2s/P01-02B-M3-SHAM-H1-R2-F2R10_S10_L001_R2_001.fastq.gz --front GTGCCAGCMGCCGCGGTAA -G GGACTACHVGGGTWTCTAAT /var/folders/kh/zt2dzkrx2x7df59wctc6jhqr0000gn/T/qiime2/abcdef/data/d6e36ee0-da28-4588-bc05-68643a35716c/data/P01-02B-M3-SHAM-H1-R2-F2R10_S10_L001_R1_001.fastq.gz /var/folders/kh/zt2dzkrx2x7df59wctc6jhqr0000gn/T/qiime2/abcdef/data/d6e36ee0-da28-4588-bc05-68643a35716c/data/P01-02B-M3-SHAM-H1-R2-F2R10_S10_L001_R2_001.fastq.gz\ Processing paired-end reads on 3 cores ...\ Done 00:00:00 27 reads @ 5793.6 \'b5s/read; 0.01 M reads/minute\ Finished in 0.161 s (5952.994 \'b5s/read; 0.01 M reads/minute).\ \ === Summary ===\ \ Total read pairs processed: 27\ Read 1 with adapter: 27 (100.0%)\ Read 2 with adapter: 27 (100.0%)\ \ == Read fate breakdown ==\ Pairs that were too short: 0 (0.0%)\ Pairs written (passing filters): 27 (100.0%)\ \ Total basepairs processed: 13,554 bp\ Read 1: 6,777 bp\ Read 2: 6,777 bp\ Quality-trimmed: 0 bp (0.0%)\ Read 1: 0 bp\ Read 2: 0 bp\ Total written (filtered): 12,446 bp (91.8%)\ Read 1: 6,235 bp\ Read 2: 6,211 bp\ \ === First read: Adapter 1 ===\ \ Sequence: GTGCCAGCMGCCGCGGTAA; Type: regular 5'; Length: 19; Trimmed: 27 times\ \ Minimum overlap: 3\ No. of allowed errors:\ 1-9 bp: 0; 10-19 bp: 1\ \ Overview of removed sequences\ length count expect max.err error counts\ 20 26 0.0 1 26\ 22 1 0.0 1 1\ \ \ === Second read: Adapter 2 ===\ \ Sequence: GGACTACHVGGGTWTCTAAT; Type: regular 5'; Length: 20; Trimmed: 27 times\ \ Minimum overlap: 3\ No. of allowed errors:\ 1-9 bp: 0; 10-19 bp: 1; 20 bp: 2\ \ Overview of removed sequences\ length count expect max.err error counts\ 20 1 0.0 2 1\ 21 26 0.0 2 26\ \ Command: cutadapt --cores 3 --error-rate 0.1 --times 1 --overlap 3 --minimum-length 1 -q 0,0 --quality-base 33 -o /var/folders/kh/zt2dzkrx2x7df59wctc6jhqr0000gn/T/q2-CasavaOneEightSingleLanePerSampleDirFmt-40l92u2s/P01-02C-M3-SHAM-H2-R1-F2R11_S11_L001_R1_001.fastq.gz -p /var/folders/kh/zt2dzkrx2x7df59wctc6jhqr0000gn/T/q2-CasavaOneEightSingleLanePerSampleDirFmt-40l92u2s/P01-02C-M3-SHAM-H2-R1-F2R11_S11_L001_R2_001.fastq.gz --front GTGCCAGCMGCCGCGGTAA -G GGACTACHVGGGTWTCTAAT /var/folders/kh/zt2dzkrx2x7df59wctc6jhqr0000gn/T/qiime2/abcdef/data/d6e36ee0-da28-4588-bc05-68643a35716c/data/P01-02C-M3-SHAM-H2-R1-F2R11_S11_L001_R1_001.fastq.gz /var/folders/kh/zt2dzkrx2x7df59wctc6jhqr0000gn/T/qiime2/abcdef/data/d6e36ee0-da28-4588-bc05-68643a35716c/data/P01-02C-M3-SHAM-H2-R1-F2R11_S11_L001_R2_001.fastq.gz\ \ This is cutadapt 4.2 with Python 3.8.16\ Command line parameters: --cores 3 --error-rate 0.1 --times 1 --overlap 3 --minimum-length 1 -q 0,0 --quality-base 33 -o /var/folders/kh/zt2dzkrx2x7df59wctc6jhqr0000gn/T/q2-CasavaOneEightSingleLanePerSampleDirFmt-40l92u2s/P01-02C-M3-SHAM-H2-R1-F2R11_S11_L001_R1_001.fastq.gz -p /var/folders/kh/zt2dzkrx2x7df59wctc6jhqr0000gn/T/q2-CasavaOneEightSingleLanePerSampleDirFmt-40l92u2s/P01-02C-M3-SHAM-H2-R1-F2R11_S11_L001_R2_001.fastq.gz --front GTGCCAGCMGCCGCGGTAA -G GGACTACHVGGGTWTCTAAT /var/folders/kh/zt2dzkrx2x7df59wctc6jhqr0000gn/T/qiime2/abcdef/data/d6e36ee0-da28-4588-bc05-68643a35716c/data/P01-02C-M3-SHAM-H2-R1-F2R11_S11_L001_R1_001.fastq.gz /var/folders/kh/zt2dzkrx2x7df59wctc6jhqr0000gn/T/qiime2/abcdef/data/d6e36ee0-da28-4588-bc05-68643a35716c/data/P01-02C-M3-SHAM-H2-R1-F2R11_S11_L001_R2_001.fastq.gz\ Processing paired-end reads on 3 cores ...\ Done 00:00:00 546 reads @ 299.0 \'b5s/read; 0.20 M reads/minute\ Finished in 0.176 s (321.559 \'b5s/read; 0.19 M reads/minute).\ \ === Summary ===\ \ Total read pairs processed: 546\ Read 1 with adapter: 546 (100.0%)\ Read 2 with adapter: 541 (99.1%)\ \ == Read fate breakdown ==\ Pairs that were too short: 0 (0.0%)\ Pairs written (passing filters): 546 (100.0%)\ \ Total basepairs processed: 274,092 bp\ Read 1: 137,046 bp\ Read 2: 137,046 bp\ Quality-trimmed: 0 bp (0.0%)\ Read 1: 0 bp\ Read 2: 0 bp\ Total written (filtered): 251,261 bp (91.7%)\ Read 1: 126,107 bp\ Read 2: 125,154 bp\ \ === First read: Adapter 1 ===\ \ Sequence: GTGCCAGCMGCCGCGGTAA; Type: regular 5'; Length: 19; Trimmed: 546 times\ \ Minimum overlap: 3\ No. of allowed errors:\ 1-9 bp: 0; 10-19 bp: 1\ \ Overview of removed sequences\ length count expect max.err error counts\ 19 6 0.0 1 2 4\ 20 524 0.0 1 508 16\ 21 7 0.0 1 4 3\ 22 9 0.0 1 8 1\ \ \ === Second read: Adapter 2 ===\ \ Sequence: GGACTACHVGGGTWTCTAAT; Type: regular 5'; Length: 20; Trimmed: 541 times\ \ Minimum overlap: 3\ No. of allowed errors:\ 1-9 bp: 0; 10-19 bp: 1; 20 bp: 2\ \ Overview of removed sequences\ length count expect max.err error counts\ 21 12 0.0 2 1 10 1\ 22 527 0.0 2 509 14 4\ 23 2 0.0 2 1 1\ \ Command: cutadapt --cores 3 --error-rate 0.1 --times 1 --overlap 3 --minimum-length 1 -q 0,0 --quality-base 33 -o /var/folders/kh/zt2dzkrx2x7df59wctc6jhqr0000gn/T/q2-CasavaOneEightSingleLanePerSampleDirFmt-40l92u2s/P01-02D-M3-SHAM-H2-R2-F2R12_S12_L001_R1_001.fastq.gz -p /var/folders/kh/zt2dzkrx2x7df59wctc6jhqr0000gn/T/q2-CasavaOneEightSingleLanePerSampleDirFmt-40l92u2s/P01-02D-M3-SHAM-H2-R2-F2R12_S12_L001_R2_001.fastq.gz --front GTGCCAGCMGCCGCGGTAA -G GGACTACHVGGGTWTCTAAT /var/folders/kh/zt2dzkrx2x7df59wctc6jhqr0000gn/T/qiime2/abcdef/data/d6e36ee0-da28-4588-bc05-68643a35716c/data/P01-02D-M3-SHAM-H2-R2-F2R12_S12_L001_R1_001.fastq.gz /var/folders/kh/zt2dzkrx2x7df59wctc6jhqr0000gn/T/qiime2/abcdef/data/d6e36ee0-da28-4588-bc05-68643a35716c/data/P01-02D-M3-SHAM-H2-R2-F2R12_S12_L001_R2_001.fastq.gz\ \ This is cutadapt 4.2 with Python 3.8.16\ Command line parameters: --cores 3 --error-rate 0.1 --times 1 --overlap 3 --minimum-length 1 -q 0,0 --quality-base 33 -o /var/folders/kh/zt2dzkrx2x7df59wctc6jhqr0000gn/T/q2-CasavaOneEightSingleLanePerSampleDirFmt-40l92u2s/P01-02D-M3-SHAM-H2-R2-F2R12_S12_L001_R1_001.fastq.gz -p /var/folders/kh/zt2dzkrx2x7df59wctc6jhqr0000gn/T/q2-CasavaOneEightSingleLanePerSampleDirFmt-40l92u2s/P01-02D-M3-SHAM-H2-R2-F2R12_S12_L001_R2_001.fastq.gz --front GTGCCAGCMGCCGCGGTAA -G GGACTACHVGGGTWTCTAAT /var/folders/kh/zt2dzkrx2x7df59wctc6jhqr0000gn/T/qiime2/abcdef/data/d6e36ee0-da28-4588-bc05-68643a35716c/data/P01-02D-M3-SHAM-H2-R2-F2R12_S12_L001_R1_001.fastq.gz /var/folders/kh/zt2dzkrx2x7df59wctc6jhqr0000gn/T/qiime2/abcdef/data/d6e36ee0-da28-4588-bc05-68643a35716c/data/P01-02D-M3-SHAM-H2-R2-F2R12_S12_L001_R2_001.fastq.gz\ Processing paired-end reads on 3 cores ...\ Done 00:00:00 229 reads @ 732.6 \'b5s/read; 0.08 M reads/minute\ Finished in 0.179 s (780.594 \'b5s/read; 0.08 M reads/minute).\ \ === Summary ===\ \ Total read pairs processed: 229\ Read 1 with adapter: 229 (100.0%)\ Read 2 with adapter: 228 (99.6%)\ \ == Read fate breakdown ==\ Pairs that were too short: 0 (0.0%)\ Pairs written (passing filters): 229 (100.0%)\ \ Total basepairs processed: 114,958 bp\ Read 1: 57,479 bp\ Read 2: 57,479 bp\ Quality-trimmed: 0 bp (0.0%)\ Read 1: 0 bp\ Read 2: 0 bp\ Total written (filtered): 105,137 bp (91.5%)\ Read 1: 52,899 bp\ Read 2: 52,238 bp\ \ === First read: Adapter 1 ===\ \ Sequence: GTGCCAGCMGCCGCGGTAA; Type: regular 5'; Length: 19; Trimmed: 229 times\ \ Minimum overlap: 3\ No. of allowed errors:\ 1-9 bp: 0; 10-19 bp: 1\ \ Overview of removed sequences\ length count expect max.err error counts\ 19 7 0.0 1 2 5\ 20 215 0.0 1 212 3\ 21 7 0.0 1 4 3\ \ \ === Second read: Adapter 2 ===\ \ Sequence: GGACTACHVGGGTWTCTAAT; Type: regular 5'; Length: 20; Trimmed: 228 times\ \ Minimum overlap: 3\ No. of allowed errors:\ 1-9 bp: 0; 10-19 bp: 1; 20 bp: 2\ \ Overview of removed sequences\ length count expect max.err error counts\ 22 3 0.0 2 0 3\ 23 225 0.0 2 219 6\ \ Command: cutadapt --cores 3 --error-rate 0.1 --times 1 --overlap 3 --minimum-length 1 -q 0,0 --quality-base 33 -o /var/folders/kh/zt2dzkrx2x7df59wctc6jhqr0000gn/T/q2-CasavaOneEightSingleLanePerSampleDirFmt-40l92u2s/P01-02E-M4-SHAM-H1-R1-F2R13_S13_L001_R1_001.fastq.gz -p /var/folders/kh/zt2dzkrx2x7df59wctc6jhqr0000gn/T/q2-CasavaOneEightSingleLanePerSampleDirFmt-40l92u2s/P01-02E-M4-SHAM-H1-R1-F2R13_S13_L001_R2_001.fastq.gz --front GTGCCAGCMGCCGCGGTAA -G GGACTACHVGGGTWTCTAAT /var/folders/kh/zt2dzkrx2x7df59wctc6jhqr0000gn/T/qiime2/abcdef/data/d6e36ee0-da28-4588-bc05-68643a35716c/data/P01-02E-M4-SHAM-H1-R1-F2R13_S13_L001_R1_001.fastq.gz /var/folders/kh/zt2dzkrx2x7df59wctc6jhqr0000gn/T/qiime2/abcdef/data/d6e36ee0-da28-4588-bc05-68643a35716c/data/P01-02E-M4-SHAM-H1-R1-F2R13_S13_L001_R2_001.fastq.gz\ \ This is cutadapt 4.2 with Python 3.8.16\ Command line parameters: --cores 3 --error-rate 0.1 --times 1 --overlap 3 --minimum-length 1 -q 0,0 --quality-base 33 -o /var/folders/kh/zt2dzkrx2x7df59wctc6jhqr0000gn/T/q2-CasavaOneEightSingleLanePerSampleDirFmt-40l92u2s/P01-02E-M4-SHAM-H1-R1-F2R13_S13_L001_R1_001.fastq.gz -p /var/folders/kh/zt2dzkrx2x7df59wctc6jhqr0000gn/T/q2-CasavaOneEightSingleLanePerSampleDirFmt-40l92u2s/P01-02E-M4-SHAM-H1-R1-F2R13_S13_L001_R2_001.fastq.gz --front GTGCCAGCMGCCGCGGTAA -G GGACTACHVGGGTWTCTAAT /var/folders/kh/zt2dzkrx2x7df59wctc6jhqr0000gn/T/qiime2/abcdef/data/d6e36ee0-da28-4588-bc05-68643a35716c/data/P01-02E-M4-SHAM-H1-R1-F2R13_S13_L001_R1_001.fastq.gz /var/folders/kh/zt2dzkrx2x7df59wctc6jhqr0000gn/T/qiime2/abcdef/data/d6e36ee0-da28-4588-bc05-68643a35716c/data/P01-02E-M4-SHAM-H1-R1-F2R13_S13_L001_R2_001.fastq.gz\ Processing paired-end reads on 3 cores ...\ Done 00:00:00 140 reads @ 1603.2 \'b5s/read; 0.04 M reads/minute\ Finished in 0.233 s (1662.215 \'b5s/read; 0.04 M reads/minute).\ \ === Summary ===\ \ Total read pairs processed: 140\ Read 1 with adapter: 140 (100.0%)\ Read 2 with adapter: 138 (98.6%)\ \ == Read fate breakdown ==\ Pairs that were too short: 0 (0.0%)\ Pairs written (passing filters): 140 (100.0%)\ \ Total basepairs processed: 70,280 bp\ Read 1: 35,140 bp\ Read 2: 35,140 bp\ Quality-trimmed: 0 bp (0.0%)\ Read 1: 0 bp\ Read 2: 0 bp\ Total written (filtered): 64,700 bp (92.1%)\ Read 1: 32,319 bp\ Read 2: 32,381 bp\ \ === First read: Adapter 1 ===\ \ Sequence: GTGCCAGCMGCCGCGGTAA; Type: regular 5'; Length: 19; Trimmed: 140 times\ \ Minimum overlap: 3\ No. of allowed errors:\ 1-9 bp: 0; 10-19 bp: 1\ \ Overview of removed sequences\ length count expect max.err error counts\ 19 1 0.0 1 0 1\ 20 128 0.0 1 124 4\ 22 11 0.0 1 10 1\ \ \ === Second read: Adapter 2 ===\ \ Sequence: GGACTACHVGGGTWTCTAAT; Type: regular 5'; Length: 20; Trimmed: 138 times\ \ Minimum overlap: 3\ No. of allowed errors:\ 1-9 bp: 0; 10-19 bp: 1; 20 bp: 2\ \ Overview of removed sequences\ length count expect max.err error counts\ 19 2 0.0 1 0 2\ 20 135 0.0 2 130 5\ 21 1 0.0 2 0 1\ \ Command: cutadapt --cores 3 --error-rate 0.1 --times 1 --overlap 3 --minimum-length 1 -q 0,0 --quality-base 33 -o /var/folders/kh/zt2dzkrx2x7df59wctc6jhqr0000gn/T/q2-CasavaOneEightSingleLanePerSampleDirFmt-40l92u2s/P01-02F-M4-SHAM-H1-R2-F2R14_S14_L001_R1_001.fastq.gz -p /var/folders/kh/zt2dzkrx2x7df59wctc6jhqr0000gn/T/q2-CasavaOneEightSingleLanePerSampleDirFmt-40l92u2s/P01-02F-M4-SHAM-H1-R2-F2R14_S14_L001_R2_001.fastq.gz --front GTGCCAGCMGCCGCGGTAA -G GGACTACHVGGGTWTCTAAT /var/folders/kh/zt2dzkrx2x7df59wctc6jhqr0000gn/T/qiime2/abcdef/data/d6e36ee0-da28-4588-bc05-68643a35716c/data/P01-02F-M4-SHAM-H1-R2-F2R14_S14_L001_R1_001.fastq.gz /var/folders/kh/zt2dzkrx2x7df59wctc6jhqr0000gn/T/qiime2/abcdef/data/d6e36ee0-da28-4588-bc05-68643a35716c/data/P01-02F-M4-SHAM-H1-R2-F2R14_S14_L001_R2_001.fastq.gz\ \ This is cutadapt 4.2 with Python 3.8.16\ Command line parameters: --cores 3 --error-rate 0.1 --times 1 --overlap 3 --minimum-length 1 -q 0,0 --quality-base 33 -o /var/folders/kh/zt2dzkrx2x7df59wctc6jhqr0000gn/T/q2-CasavaOneEightSingleLanePerSampleDirFmt-40l92u2s/P01-02F-M4-SHAM-H1-R2-F2R14_S14_L001_R1_001.fastq.gz -p /var/folders/kh/zt2dzkrx2x7df59wctc6jhqr0000gn/T/q2-CasavaOneEightSingleLanePerSampleDirFmt-40l92u2s/P01-02F-M4-SHAM-H1-R2-F2R14_S14_L001_R2_001.fastq.gz --front GTGCCAGCMGCCGCGGTAA -G GGACTACHVGGGTWTCTAAT /var/folders/kh/zt2dzkrx2x7df59wctc6jhqr0000gn/T/qiime2/abcdef/data/d6e36ee0-da28-4588-bc05-68643a35716c/data/P01-02F-M4-SHAM-H1-R2-F2R14_S14_L001_R1_001.fastq.gz /var/folders/kh/zt2dzkrx2x7df59wctc6jhqr0000gn/T/qiime2/abcdef/data/d6e36ee0-da28-4588-bc05-68643a35716c/data/P01-02F-M4-SHAM-H1-R2-F2R14_S14_L001_R2_001.fastq.gz\ Processing paired-end reads on 3 cores ...\ Done 00:00:00 293 reads @ 516.3 \'b5s/read; 0.12 M reads/minute\ Finished in 0.164 s (559.392 \'b5s/read; 0.11 M reads/minute).\ \ === Summary ===\ \ Total read pairs processed: 293\ Read 1 with adapter: 291 (99.3%)\ Read 2 with adapter: 290 (99.0%)\ \ == Read fate breakdown ==\ Pairs that were too short: 0 (0.0%)\ Pairs written (passing filters): 293 (100.0%)\ \ Total basepairs processed: 147,086 bp\ Read 1: 73,543 bp\ Read 2: 73,543 bp\ Quality-trimmed: 0 bp (0.0%)\ Read 1: 0 bp\ Read 2: 0 bp\ Total written (filtered): 135,157 bp (91.9%)\ Read 1: 67,701 bp\ Read 2: 67,456 bp\ \ === First read: Adapter 1 ===\ \ Sequence: GTGCCAGCMGCCGCGGTAA; Type: regular 5'; Length: 19; Trimmed: 291 times\ \ Minimum overlap: 3\ No. of allowed errors:\ 1-9 bp: 0; 10-19 bp: 1\ \ Overview of removed sequences\ length count expect max.err error counts\ 19 5 0.0 1 1 4\ 20 268 0.0 1 262 6\ 21 9 0.0 1 8 1\ 22 9 0.0 1 9\ \ \ === Second read: Adapter 2 ===\ \ Sequence: GGACTACHVGGGTWTCTAAT; Type: regular 5'; Length: 20; Trimmed: 290 times\ \ Minimum overlap: 3\ No. of allowed errors:\ 1-9 bp: 0; 10-19 bp: 1; 20 bp: 2\ \ Overview of removed sequences\ length count expect max.err error counts\ 20 5 0.0 2 0 4 1\ 21 283 0.0 2 269 11 3\ 22 2 0.0 2 0 2\ \ Command: cutadapt --cores 3 --error-rate 0.1 --times 1 --overlap 3 --minimum-length 1 -q 0,0 --quality-base 33 -o /var/folders/kh/zt2dzkrx2x7df59wctc6jhqr0000gn/T/q2-CasavaOneEightSingleLanePerSampleDirFmt-40l92u2s/P01-02G-M4-SHAM-H2-R1-F2R15_S15_L001_R1_001.fastq.gz -p /var/folders/kh/zt2dzkrx2x7df59wctc6jhqr0000gn/T/q2-CasavaOneEightSingleLanePerSampleDirFmt-40l92u2s/P01-02G-M4-SHAM-H2-R1-F2R15_S15_L001_R2_001.fastq.gz --front GTGCCAGCMGCCGCGGTAA -G GGACTACHVGGGTWTCTAAT /var/folders/kh/zt2dzkrx2x7df59wctc6jhqr0000gn/T/qiime2/abcdef/data/d6e36ee0-da28-4588-bc05-68643a35716c/data/P01-02G-M4-SHAM-H2-R1-F2R15_S15_L001_R1_001.fastq.gz /var/folders/kh/zt2dzkrx2x7df59wctc6jhqr0000gn/T/qiime2/abcdef/data/d6e36ee0-da28-4588-bc05-68643a35716c/data/P01-02G-M4-SHAM-H2-R1-F2R15_S15_L001_R2_001.fastq.gz\ \ This is cutadapt 4.2 with Python 3.8.16\ Command line parameters: --cores 3 --error-rate 0.1 --times 1 --overlap 3 --minimum-length 1 -q 0,0 --quality-base 33 -o /var/folders/kh/zt2dzkrx2x7df59wctc6jhqr0000gn/T/q2-CasavaOneEightSingleLanePerSampleDirFmt-40l92u2s/P01-02G-M4-SHAM-H2-R1-F2R15_S15_L001_R1_001.fastq.gz -p /var/folders/kh/zt2dzkrx2x7df59wctc6jhqr0000gn/T/q2-CasavaOneEightSingleLanePerSampleDirFmt-40l92u2s/P01-02G-M4-SHAM-H2-R1-F2R15_S15_L001_R2_001.fastq.gz --front GTGCCAGCMGCCGCGGTAA -G GGACTACHVGGGTWTCTAAT /var/folders/kh/zt2dzkrx2x7df59wctc6jhqr0000gn/T/qiime2/abcdef/data/d6e36ee0-da28-4588-bc05-68643a35716c/data/P01-02G-M4-SHAM-H2-R1-F2R15_S15_L001_R1_001.fastq.gz /var/folders/kh/zt2dzkrx2x7df59wctc6jhqr0000gn/T/qiime2/abcdef/data/d6e36ee0-da28-4588-bc05-68643a35716c/data/P01-02G-M4-SHAM-H2-R1-F2R15_S15_L001_R2_001.fastq.gz\ Processing paired-end reads on 3 cores ...\ Done 00:00:00 56 reads @ 2786.3 \'b5s/read; 0.02 M reads/minute\ Finished in 0.161 s (2874.323 \'b5s/read; 0.02 M reads/minute).\ \ === Summary ===\ \ Total read pairs processed: 56\ Read 1 with adapter: 56 (100.0%)\ Read 2 with adapter: 55 (98.2%)\ \ == Read fate breakdown ==\ Pairs that were too short: 0 (0.0%)\ Pairs written (passing filters): 56 (100.0%)\ \ Total basepairs processed: 28,112 bp\ Read 1: 14,056 bp\ Read 2: 14,056 bp\ Quality-trimmed: 0 bp (0.0%)\ Read 1: 0 bp\ Read 2: 0 bp\ Total written (filtered): 25,777 bp (91.7%)\ Read 1: 12,930 bp\ Read 2: 12,847 bp\ \ === First read: Adapter 1 ===\ \ Sequence: GTGCCAGCMGCCGCGGTAA; Type: regular 5'; Length: 19; Trimmed: 56 times\ \ Minimum overlap: 3\ No. of allowed errors:\ 1-9 bp: 0; 10-19 bp: 1\ \ Overview of removed sequences\ length count expect max.err error counts\ 20 51 0.0 1 51\ 21 4 0.0 1 4\ 22 1 0.0 1 1\ \ \ === Second read: Adapter 2 ===\ \ Sequence: GGACTACHVGGGTWTCTAAT; Type: regular 5'; Length: 20; Trimmed: 55 times\ \ Minimum overlap: 3\ No. of allowed errors:\ 1-9 bp: 0; 10-19 bp: 1; 20 bp: 2\ \ Overview of removed sequences\ length count expect max.err error counts\ 21 1 0.0 2 0 1\ 22 54 0.0 2 50 3 1\ \ Command: cutadapt --cores 3 --error-rate 0.1 --times 1 --overlap 3 --minimum-length 1 -q 0,0 --quality-base 33 -o /var/folders/kh/zt2dzkrx2x7df59wctc6jhqr0000gn/T/q2-CasavaOneEightSingleLanePerSampleDirFmt-40l92u2s/P01-02H-M4-SHAM-H2-R2-F2R16_S16_L001_R1_001.fastq.gz -p /var/folders/kh/zt2dzkrx2x7df59wctc6jhqr0000gn/T/q2-CasavaOneEightSingleLanePerSampleDirFmt-40l92u2s/P01-02H-M4-SHAM-H2-R2-F2R16_S16_L001_R2_001.fastq.gz --front GTGCCAGCMGCCGCGGTAA -G GGACTACHVGGGTWTCTAAT /var/folders/kh/zt2dzkrx2x7df59wctc6jhqr0000gn/T/qiime2/abcdef/data/d6e36ee0-da28-4588-bc05-68643a35716c/data/P01-02H-M4-SHAM-H2-R2-F2R16_S16_L001_R1_001.fastq.gz /var/folders/kh/zt2dzkrx2x7df59wctc6jhqr0000gn/T/qiime2/abcdef/data/d6e36ee0-da28-4588-bc05-68643a35716c/data/P01-02H-M4-SHAM-H2-R2-F2R16_S16_L001_R2_001.fastq.gz\ \ This is cutadapt 4.2 with Python 3.8.16\ Command line parameters: --cores 3 --error-rate 0.1 --times 1 --overlap 3 --minimum-length 1 -q 0,0 --quality-base 33 -o /var/folders/kh/zt2dzkrx2x7df59wctc6jhqr0000gn/T/q2-CasavaOneEightSingleLanePerSampleDirFmt-40l92u2s/P01-02H-M4-SHAM-H2-R2-F2R16_S16_L001_R1_001.fastq.gz -p /var/folders/kh/zt2dzkrx2x7df59wctc6jhqr0000gn/T/q2-CasavaOneEightSingleLanePerSampleDirFmt-40l92u2s/P01-02H-M4-SHAM-H2-R2-F2R16_S16_L001_R2_001.fastq.gz --front GTGCCAGCMGCCGCGGTAA -G GGACTACHVGGGTWTCTAAT /var/folders/kh/zt2dzkrx2x7df59wctc6jhqr0000gn/T/qiime2/abcdef/data/d6e36ee0-da28-4588-bc05-68643a35716c/data/P01-02H-M4-SHAM-H2-R2-F2R16_S16_L001_R1_001.fastq.gz /var/folders/kh/zt2dzkrx2x7df59wctc6jhqr0000gn/T/qiime2/abcdef/data/d6e36ee0-da28-4588-bc05-68643a35716c/data/P01-02H-M4-SHAM-H2-R2-F2R16_S16_L001_R2_001.fastq.gz\ Processing paired-end reads on 3 cores ...\ Done 00:00:00 105 reads @ 1419.4 \'b5s/read; 0.04 M reads/minute\ Finished in 0.156 s (1487.287 \'b5s/read; 0.04 M reads/minute).\ \ === Summary ===\ \ Total read pairs processed: 105\ Read 1 with adapter: 105 (100.0%)\ Read 2 with adapter: 105 (100.0%)\ \ == Read fate breakdown ==\ Pairs that were too short: 0 (0.0%)\ Pairs written (passing filters): 105 (100.0%)\ \ Total basepairs processed: 52,710 bp\ Read 1: 26,355 bp\ Read 2: 26,355 bp\ Quality-trimmed: 0 bp (0.0%)\ Read 1: 0 bp\ Read 2: 0 bp\ Total written (filtered): 48,187 bp (91.4%)\ Read 1: 24,246 bp\ Read 2: 23,941 bp\ \ === First read: Adapter 1 ===\ \ Sequence: GTGCCAGCMGCCGCGGTAA; Type: regular 5'; Length: 19; Trimmed: 105 times\ \ Minimum overlap: 3\ No. of allowed errors:\ 1-9 bp: 0; 10-19 bp: 1\ \ Overview of removed sequences\ length count expect max.err error counts\ 19 2 0.0 1 1 1\ 20 95 0.0 1 95\ 21 5 0.0 1 5\ 22 3 0.0 1 3\ \ \ === Second read: Adapter 2 ===\ \ Sequence: GGACTACHVGGGTWTCTAAT; Type: regular 5'; Length: 20; Trimmed: 105 times\ \ Minimum overlap: 3\ No. of allowed errors:\ 1-9 bp: 0; 10-19 bp: 1; 20 bp: 2\ \ Overview of removed sequences\ length count expect max.err error counts\ 22 1 0.0 2 0 1\ 23 104 0.0 2 104\ \ Command: cutadapt --cores 3 --error-rate 0.1 --times 1 --overlap 3 --minimum-length 1 -q 0,0 --quality-base 33 -o /var/folders/kh/zt2dzkrx2x7df59wctc6jhqr0000gn/T/q2-CasavaOneEightSingleLanePerSampleDirFmt-40l92u2s/P01-03A-M5-MI-H1-R1-F3R9_S17_L001_R1_001.fastq.gz -p /var/folders/kh/zt2dzkrx2x7df59wctc6jhqr0000gn/T/q2-CasavaOneEightSingleLanePerSampleDirFmt-40l92u2s/P01-03A-M5-MI-H1-R1-F3R9_S17_L001_R2_001.fastq.gz --front GTGCCAGCMGCCGCGGTAA -G GGACTACHVGGGTWTCTAAT /var/folders/kh/zt2dzkrx2x7df59wctc6jhqr0000gn/T/qiime2/abcdef/data/d6e36ee0-da28-4588-bc05-68643a35716c/data/P01-03A-M5-MI-H1-R1-F3R9_S17_L001_R1_001.fastq.gz /var/folders/kh/zt2dzkrx2x7df59wctc6jhqr0000gn/T/qiime2/abcdef/data/d6e36ee0-da28-4588-bc05-68643a35716c/data/P01-03A-M5-MI-H1-R1-F3R9_S17_L001_R2_001.fastq.gz\ \ This is cutadapt 4.2 with Python 3.8.16\ Command line parameters: --cores 3 --error-rate 0.1 --times 1 --overlap 3 --minimum-length 1 -q 0,0 --quality-base 33 -o /var/folders/kh/zt2dzkrx2x7df59wctc6jhqr0000gn/T/q2-CasavaOneEightSingleLanePerSampleDirFmt-40l92u2s/P01-03A-M5-MI-H1-R1-F3R9_S17_L001_R1_001.fastq.gz -p /var/folders/kh/zt2dzkrx2x7df59wctc6jhqr0000gn/T/q2-CasavaOneEightSingleLanePerSampleDirFmt-40l92u2s/P01-03A-M5-MI-H1-R1-F3R9_S17_L001_R2_001.fastq.gz --front GTGCCAGCMGCCGCGGTAA -G GGACTACHVGGGTWTCTAAT /var/folders/kh/zt2dzkrx2x7df59wctc6jhqr0000gn/T/qiime2/abcdef/data/d6e36ee0-da28-4588-bc05-68643a35716c/data/P01-03A-M5-MI-H1-R1-F3R9_S17_L001_R1_001.fastq.gz /var/folders/kh/zt2dzkrx2x7df59wctc6jhqr0000gn/T/qiime2/abcdef/data/d6e36ee0-da28-4588-bc05-68643a35716c/data/P01-03A-M5-MI-H1-R1-F3R9_S17_L001_R2_001.fastq.gz\ Processing paired-end reads on 3 cores ...\ Done 00:00:00 1,488 reads @ 144.0 \'b5s/read; 0.42 M reads/minute\ Finished in 0.229 s (154.060 \'b5s/read; 0.39 M reads/minute).\ \ === Summary ===\ \ Total read pairs processed: 1,488\ Read 1 with adapter: 1,482 (99.6%)\ Read 2 with adapter: 1,477 (99.3%)\ \ == Read fate breakdown ==\ Pairs that were too short: 0 (0.0%)\ Pairs written (passing filters): 1,488 (100.0%)\ \ Total basepairs processed: 746,976 bp\ Read 1: 373,488 bp\ Read 2: 373,488 bp\ Quality-trimmed: 0 bp (0.0%)\ Read 1: 0 bp\ Read 2: 0 bp\ Total written (filtered): 686,308 bp (91.9%)\ Read 1: 342,388 bp\ Read 2: 343,920 bp\ \ === First read: Adapter 1 ===\ \ Sequence: GTGCCAGCMGCCGCGGTAA; Type: regular 5'; Length: 19; Trimmed: 1482 times\ \ Minimum overlap: 3\ No. of allowed errors:\ 1-9 bp: 0; 10-19 bp: 1\ \ Overview of removed sequences\ length count expect max.err error counts\ 19 1 0.0 1 0 1\ 20 21 0.0 1 1 20\ 21 1459 0.0 1 1363 96\ 22 1 0.0 1 0 1\ \ \ === Second read: Adapter 2 ===\ \ Sequence: GGACTACHVGGGTWTCTAAT; Type: regular 5'; Length: 20; Trimmed: 1477 times\ \ Minimum overlap: 3\ No. of allowed errors:\ 1-9 bp: 0; 10-19 bp: 1; 20 bp: 2\ \ Overview of removed sequences\ length count expect max.err error counts\ 18 1 0.0 1 0 0 1\ 19 14 0.0 1 3 11\ 20 1458 0.0 2 1409 46 3\ 21 3 0.0 2 1 1 1\ 61 1 0.0 2 0 1\ \ Command: cutadapt --cores 3 --error-rate 0.1 --times 1 --overlap 3 --minimum-length 1 -q 0,0 --quality-base 33 -o /var/folders/kh/zt2dzkrx2x7df59wctc6jhqr0000gn/T/q2-CasavaOneEightSingleLanePerSampleDirFmt-40l92u2s/P01-03B-M5-MI-H1-R2-F3R10_S18_L001_R1_001.fastq.gz -p /var/folders/kh/zt2dzkrx2x7df59wctc6jhqr0000gn/T/q2-CasavaOneEightSingleLanePerSampleDirFmt-40l92u2s/P01-03B-M5-MI-H1-R2-F3R10_S18_L001_R2_001.fastq.gz --front GTGCCAGCMGCCGCGGTAA -G GGACTACHVGGGTWTCTAAT /var/folders/kh/zt2dzkrx2x7df59wctc6jhqr0000gn/T/qiime2/abcdef/data/d6e36ee0-da28-4588-bc05-68643a35716c/data/P01-03B-M5-MI-H1-R2-F3R10_S18_L001_R1_001.fastq.gz /var/folders/kh/zt2dzkrx2x7df59wctc6jhqr0000gn/T/qiime2/abcdef/data/d6e36ee0-da28-4588-bc05-68643a35716c/data/P01-03B-M5-MI-H1-R2-F3R10_S18_L001_R2_001.fastq.gz\ \ This is cutadapt 4.2 with Python 3.8.16\ Command line parameters: --cores 3 --error-rate 0.1 --times 1 --overlap 3 --minimum-length 1 -q 0,0 --quality-base 33 -o /var/folders/kh/zt2dzkrx2x7df59wctc6jhqr0000gn/T/q2-CasavaOneEightSingleLanePerSampleDirFmt-40l92u2s/P01-03B-M5-MI-H1-R2-F3R10_S18_L001_R1_001.fastq.gz -p /var/folders/kh/zt2dzkrx2x7df59wctc6jhqr0000gn/T/q2-CasavaOneEightSingleLanePerSampleDirFmt-40l92u2s/P01-03B-M5-MI-H1-R2-F3R10_S18_L001_R2_001.fastq.gz --front GTGCCAGCMGCCGCGGTAA -G GGACTACHVGGGTWTCTAAT /var/folders/kh/zt2dzkrx2x7df59wctc6jhqr0000gn/T/qiime2/abcdef/data/d6e36ee0-da28-4588-bc05-68643a35716c/data/P01-03B-M5-MI-H1-R2-F3R10_S18_L001_R1_001.fastq.gz /var/folders/kh/zt2dzkrx2x7df59wctc6jhqr0000gn/T/qiime2/abcdef/data/d6e36ee0-da28-4588-bc05-68643a35716c/data/P01-03B-M5-MI-H1-R2-F3R10_S18_L001_R2_001.fastq.gz\ Processing paired-end reads on 3 cores ...\ Done 00:00:00 801 reads @ 230.3 \'b5s/read; 0.26 M reads/minute\ Finished in 0.198 s (246.664 \'b5s/read; 0.24 M reads/minute).\ \ === Summary ===\ \ Total read pairs processed: 801\ Read 1 with adapter: 800 (99.9%)\ Read 2 with adapter: 787 (98.3%)\ \ == Read fate breakdown ==\ Pairs that were too short: 0 (0.0%)\ Pairs written (passing filters): 801 (100.0%)\ \ Total basepairs processed: 402,102 bp\ Read 1: 201,051 bp\ Read 2: 201,051 bp\ Quality-trimmed: 0 bp (0.0%)\ Read 1: 0 bp\ Read 2: 0 bp\ Total written (filtered): 368,681 bp (91.7%)\ Read 1: 184,259 bp\ Read 2: 184,422 bp\ \ === First read: Adapter 1 ===\ \ Sequence: GTGCCAGCMGCCGCGGTAA; Type: regular 5'; Length: 19; Trimmed: 800 times\ \ Minimum overlap: 3\ No. of allowed errors:\ 1-9 bp: 0; 10-19 bp: 1\ \ Overview of removed sequences\ length count expect max.err error counts\ 20 14 0.0 1 2 12\ 21 780 0.0 1 736 44\ 22 6 0.0 1 6\ \ \ === Second read: Adapter 2 ===\ \ Sequence: GGACTACHVGGGTWTCTAAT; Type: regular 5'; Length: 20; Trimmed: 787 times\ \ Minimum overlap: 3\ No. of allowed errors:\ 1-9 bp: 0; 10-19 bp: 1; 20 bp: 2\ \ Overview of removed sequences\ length count expect max.err error counts\ 19 1 0.0 1 0 0 1\ 20 13 0.0 2 1 12\ 21 770 0.0 2 731 26 13\ 60 3 0.0 2 2 1\ \ Command: cutadapt --cores 3 --error-rate 0.1 --times 1 --overlap 3 --minimum-length 1 -q 0,0 --quality-base 33 -o /var/folders/kh/zt2dzkrx2x7df59wctc6jhqr0000gn/T/q2-CasavaOneEightSingleLanePerSampleDirFmt-40l92u2s/P01-03C-M5-MI-H2-R1-F3R11_S19_L001_R1_001.fastq.gz -p /var/folders/kh/zt2dzkrx2x7df59wctc6jhqr0000gn/T/q2-CasavaOneEightSingleLanePerSampleDirFmt-40l92u2s/P01-03C-M5-MI-H2-R1-F3R11_S19_L001_R2_001.fastq.gz --front GTGCCAGCMGCCGCGGTAA -G GGACTACHVGGGTWTCTAAT /var/folders/kh/zt2dzkrx2x7df59wctc6jhqr0000gn/T/qiime2/abcdef/data/d6e36ee0-da28-4588-bc05-68643a35716c/data/P01-03C-M5-MI-H2-R1-F3R11_S19_L001_R1_001.fastq.gz /var/folders/kh/zt2dzkrx2x7df59wctc6jhqr0000gn/T/qiime2/abcdef/data/d6e36ee0-da28-4588-bc05-68643a35716c/data/P01-03C-M5-MI-H2-R1-F3R11_S19_L001_R2_001.fastq.gz\ \ This is cutadapt 4.2 with Python 3.8.16\ Command line parameters: --cores 3 --error-rate 0.1 --times 1 --overlap 3 --minimum-length 1 -q 0,0 --quality-base 33 -o /var/folders/kh/zt2dzkrx2x7df59wctc6jhqr0000gn/T/q2-CasavaOneEightSingleLanePerSampleDirFmt-40l92u2s/P01-03C-M5-MI-H2-R1-F3R11_S19_L001_R1_001.fastq.gz -p /var/folders/kh/zt2dzkrx2x7df59wctc6jhqr0000gn/T/q2-CasavaOneEightSingleLanePerSampleDirFmt-40l92u2s/P01-03C-M5-MI-H2-R1-F3R11_S19_L001_R2_001.fastq.gz --front GTGCCAGCMGCCGCGGTAA -G GGACTACHVGGGTWTCTAAT /var/folders/kh/zt2dzkrx2x7df59wctc6jhqr0000gn/T/qiime2/abcdef/data/d6e36ee0-da28-4588-bc05-68643a35716c/data/P01-03C-M5-MI-H2-R1-F3R11_S19_L001_R1_001.fastq.gz /var/folders/kh/zt2dzkrx2x7df59wctc6jhqr0000gn/T/qiime2/abcdef/data/d6e36ee0-da28-4588-bc05-68643a35716c/data/P01-03C-M5-MI-H2-R1-F3R11_S19_L001_R2_001.fastq.gz\ Processing paired-end reads on 3 cores ...\ Done 00:00:00 30 reads @ 5510.2 \'b5s/read; 0.01 M reads/minute\ Finished in 0.170 s (5653.906 \'b5s/read; 0.01 M reads/minute).\ \ === Summary ===\ \ Total read pairs processed: 30\ Read 1 with adapter: 30 (100.0%)\ Read 2 with adapter: 29 (96.7%)\ \ == Read fate breakdown ==\ Pairs that were too short: 0 (0.0%)\ Pairs written (passing filters): 30 (100.0%)\ \ Total basepairs processed: 15,060 bp\ Read 1: 7,530 bp\ Read 2: 7,530 bp\ Quality-trimmed: 0 bp (0.0%)\ Read 1: 0 bp\ Read 2: 0 bp\ Total written (filtered): 13,786 bp (91.5%)\ Read 1: 6,894 bp\ Read 2: 6,892 bp\ \ === First read: Adapter 1 ===\ \ Sequence: GTGCCAGCMGCCGCGGTAA; Type: regular 5'; Length: 19; Trimmed: 30 times\ \ Minimum overlap: 3\ No. of allowed errors:\ 1-9 bp: 0; 10-19 bp: 1\ \ Overview of removed sequences\ length count expect max.err error counts\ 21 24 0.0 1 24\ 22 6 0.0 1 6\ \ \ === Second read: Adapter 2 ===\ \ Sequence: GGACTACHVGGGTWTCTAAT; Type: regular 5'; Length: 20; Trimmed: 29 times\ \ Minimum overlap: 3\ No. of allowed errors:\ 1-9 bp: 0; 10-19 bp: 1; 20 bp: 2\ \ Overview of removed sequences\ length count expect max.err error counts\ 22 29 0.0 2 29\ \ Command: cutadapt --cores 3 --error-rate 0.1 --times 1 --overlap 3 --minimum-length 1 -q 0,0 --quality-base 33 -o /var/folders/kh/zt2dzkrx2x7df59wctc6jhqr0000gn/T/q2-CasavaOneEightSingleLanePerSampleDirFmt-40l92u2s/P01-03D-M5-MI-H2-R2-F3R12_S20_L001_R1_001.fastq.gz -p /var/folders/kh/zt2dzkrx2x7df59wctc6jhqr0000gn/T/q2-CasavaOneEightSingleLanePerSampleDirFmt-40l92u2s/P01-03D-M5-MI-H2-R2-F3R12_S20_L001_R2_001.fastq.gz --front GTGCCAGCMGCCGCGGTAA -G GGACTACHVGGGTWTCTAAT /var/folders/kh/zt2dzkrx2x7df59wctc6jhqr0000gn/T/qiime2/abcdef/data/d6e36ee0-da28-4588-bc05-68643a35716c/data/P01-03D-M5-MI-H2-R2-F3R12_S20_L001_R1_001.fastq.gz /var/folders/kh/zt2dzkrx2x7df59wctc6jhqr0000gn/T/qiime2/abcdef/data/d6e36ee0-da28-4588-bc05-68643a35716c/data/P01-03D-M5-MI-H2-R2-F3R12_S20_L001_R2_001.fastq.gz\ \ This is cutadapt 4.2 with Python 3.8.16\ Command line parameters: --cores 3 --error-rate 0.1 --times 1 --overlap 3 --minimum-length 1 -q 0,0 --quality-base 33 -o /var/folders/kh/zt2dzkrx2x7df59wctc6jhqr0000gn/T/q2-CasavaOneEightSingleLanePerSampleDirFmt-40l92u2s/P01-03D-M5-MI-H2-R2-F3R12_S20_L001_R1_001.fastq.gz -p /var/folders/kh/zt2dzkrx2x7df59wctc6jhqr0000gn/T/q2-CasavaOneEightSingleLanePerSampleDirFmt-40l92u2s/P01-03D-M5-MI-H2-R2-F3R12_S20_L001_R2_001.fastq.gz --front GTGCCAGCMGCCGCGGTAA -G GGACTACHVGGGTWTCTAAT /var/folders/kh/zt2dzkrx2x7df59wctc6jhqr0000gn/T/qiime2/abcdef/data/d6e36ee0-da28-4588-bc05-68643a35716c/data/P01-03D-M5-MI-H2-R2-F3R12_S20_L001_R1_001.fastq.gz /var/folders/kh/zt2dzkrx2x7df59wctc6jhqr0000gn/T/qiime2/abcdef/data/d6e36ee0-da28-4588-bc05-68643a35716c/data/P01-03D-M5-MI-H2-R2-F3R12_S20_L001_R2_001.fastq.gz\ Processing paired-end reads on 3 cores ...\ Done 00:00:00 21 reads @ 7952.2 \'b5s/read; 0.01 M reads/minute\ Finished in 0.172 s (8185.909 \'b5s/read; 0.01 M reads/minute).\ \ === Summary ===\ \ Total read pairs processed: 21\ Read 1 with adapter: 20 (95.2%)\ Read 2 with adapter: 18 (85.7%)\ \ == Read fate breakdown ==\ Pairs that were too short: 0 (0.0%)\ Pairs written (passing filters): 21 (100.0%)\ \ Total basepairs processed: 10,542 bp\ Read 1: 5,271 bp\ Read 2: 5,271 bp\ Quality-trimmed: 0 bp (0.0%)\ Read 1: 0 bp\ Read 2: 0 bp\ Total written (filtered): 9,714 bp (92.1%)\ Read 1: 4,848 bp\ Read 2: 4,866 bp\ \ === First read: Adapter 1 ===\ \ Sequence: GTGCCAGCMGCCGCGGTAA; Type: regular 5'; Length: 19; Trimmed: 20 times\ \ Minimum overlap: 3\ No. of allowed errors:\ 1-9 bp: 0; 10-19 bp: 1\ \ Overview of removed sequences\ length count expect max.err error counts\ 21 17 0.0 1 16 1\ 22 3 0.0 1 3\ \ \ === Second read: Adapter 2 ===\ \ Sequence: GGACTACHVGGGTWTCTAAT; Type: regular 5'; Length: 20; Trimmed: 18 times\ \ Minimum overlap: 3\ No. of allowed errors:\ 1-9 bp: 0; 10-19 bp: 1; 20 bp: 2\ \ Overview of removed sequences\ length count expect max.err error counts\ 20 3 0.0 2 2 1\ 23 15 0.0 2 15\ \ Command: cutadapt --cores 3 --error-rate 0.1 --times 1 --overlap 3 --minimum-length 1 -q 0,0 --quality-base 33 -o /var/folders/kh/zt2dzkrx2x7df59wctc6jhqr0000gn/T/q2-CasavaOneEightSingleLanePerSampleDirFmt-40l92u2s/P01-03E-M6-MI-H1-R1-F3R13_S21_L001_R1_001.fastq.gz -p /var/folders/kh/zt2dzkrx2x7df59wctc6jhqr0000gn/T/q2-CasavaOneEightSingleLanePerSampleDirFmt-40l92u2s/P01-03E-M6-MI-H1-R1-F3R13_S21_L001_R2_001.fastq.gz --front GTGCCAGCMGCCGCGGTAA -G GGACTACHVGGGTWTCTAAT /var/folders/kh/zt2dzkrx2x7df59wctc6jhqr0000gn/T/qiime2/abcdef/data/d6e36ee0-da28-4588-bc05-68643a35716c/data/P01-03E-M6-MI-H1-R1-F3R13_S21_L001_R1_001.fastq.gz /var/folders/kh/zt2dzkrx2x7df59wctc6jhqr0000gn/T/qiime2/abcdef/data/d6e36ee0-da28-4588-bc05-68643a35716c/data/P01-03E-M6-MI-H1-R1-F3R13_S21_L001_R2_001.fastq.gz\ \ This is cutadapt 4.2 with Python 3.8.16\ Command line parameters: --cores 3 --error-rate 0.1 --times 1 --overlap 3 --minimum-length 1 -q 0,0 --quality-base 33 -o /var/folders/kh/zt2dzkrx2x7df59wctc6jhqr0000gn/T/q2-CasavaOneEightSingleLanePerSampleDirFmt-40l92u2s/P01-03E-M6-MI-H1-R1-F3R13_S21_L001_R1_001.fastq.gz -p /var/folders/kh/zt2dzkrx2x7df59wctc6jhqr0000gn/T/q2-CasavaOneEightSingleLanePerSampleDirFmt-40l92u2s/P01-03E-M6-MI-H1-R1-F3R13_S21_L001_R2_001.fastq.gz --front GTGCCAGCMGCCGCGGTAA -G GGACTACHVGGGTWTCTAAT /var/folders/kh/zt2dzkrx2x7df59wctc6jhqr0000gn/T/qiime2/abcdef/data/d6e36ee0-da28-4588-bc05-68643a35716c/data/P01-03E-M6-MI-H1-R1-F3R13_S21_L001_R1_001.fastq.gz /var/folders/kh/zt2dzkrx2x7df59wctc6jhqr0000gn/T/qiime2/abcdef/data/d6e36ee0-da28-4588-bc05-68643a35716c/data/P01-03E-M6-MI-H1-R1-F3R13_S21_L001_R2_001.fastq.gz\ Processing paired-end reads on 3 cores ...\ Done 00:00:00 3,780 reads @ 74.7 \'b5s/read; 0.80 M reads/minute\ Finished in 0.302 s (79.847 \'b5s/read; 0.75 M reads/minute).\ \ === Summary ===\ \ Total read pairs processed: 3,780\ Read 1 with adapter: 3,763 (99.6%)\ Read 2 with adapter: 3,747 (99.1%)\ \ == Read fate breakdown ==\ Pairs that were too short: 0 (0.0%)\ Pairs written (passing filters): 3,780 (100.0%)\ \ Total basepairs processed: 1,897,560 bp\ Read 1: 948,780 bp\ Read 2: 948,780 bp\ Quality-trimmed: 0 bp (0.0%)\ Read 1: 0 bp\ Read 2: 0 bp\ Total written (filtered): 1,743,683 bp (91.9%)\ Read 1: 869,785 bp\ Read 2: 873,898 bp\ \ === First read: Adapter 1 ===\ \ Sequence: GTGCCAGCMGCCGCGGTAA; Type: regular 5'; Length: 19; Trimmed: 3763 times\ \ Minimum overlap: 3\ No. of allowed errors:\ 1-9 bp: 0; 10-19 bp: 1\ \ Overview of removed sequences\ length count expect max.err error counts\ 18 1 0.0 1 0 1\ 19 1 0.0 1 0 1\ 20 38 0.0 1 2 36\ 21 3708 0.0 1 3501 207\ 22 15 0.0 1 12 3\ \ \ === Second read: Adapter 2 ===\ \ Sequence: GGACTACHVGGGTWTCTAAT; Type: regular 5'; Length: 20; Trimmed: 3747 times\ \ Minimum overlap: 3\ No. of allowed errors:\ 1-9 bp: 0; 10-19 bp: 1; 20 bp: 2\ \ Overview of removed sequences\ length count expect max.err error counts\ 3 1 59.1 0 1\ 18 3 0.0 1 1 0 2\ 19 37 0.0 1 1 34 2\ 20 3704 0.0 2 3587 99 18\ 21 2 0.0 2 0 2\ \ Command: cutadapt --cores 3 --error-rate 0.1 --times 1 --overlap 3 --minimum-length 1 -q 0,0 --quality-base 33 -o /var/folders/kh/zt2dzkrx2x7df59wctc6jhqr0000gn/T/q2-CasavaOneEightSingleLanePerSampleDirFmt-40l92u2s/P01-03F-M6-MI-H1-R2-F3R14_S22_L001_R1_001.fastq.gz -p /var/folders/kh/zt2dzkrx2x7df59wctc6jhqr0000gn/T/q2-CasavaOneEightSingleLanePerSampleDirFmt-40l92u2s/P01-03F-M6-MI-H1-R2-F3R14_S22_L001_R2_001.fastq.gz --front GTGCCAGCMGCCGCGGTAA -G GGACTACHVGGGTWTCTAAT /var/folders/kh/zt2dzkrx2x7df59wctc6jhqr0000gn/T/qiime2/abcdef/data/d6e36ee0-da28-4588-bc05-68643a35716c/data/P01-03F-M6-MI-H1-R2-F3R14_S22_L001_R1_001.fastq.gz /var/folders/kh/zt2dzkrx2x7df59wctc6jhqr0000gn/T/qiime2/abcdef/data/d6e36ee0-da28-4588-bc05-68643a35716c/data/P01-03F-M6-MI-H1-R2-F3R14_S22_L001_R2_001.fastq.gz\ \ This is cutadapt 4.2 with Python 3.8.16\ Command line parameters: --cores 3 --error-rate 0.1 --times 1 --overlap 3 --minimum-length 1 -q 0,0 --quality-base 33 -o /var/folders/kh/zt2dzkrx2x7df59wctc6jhqr0000gn/T/q2-CasavaOneEightSingleLanePerSampleDirFmt-40l92u2s/P01-03F-M6-MI-H1-R2-F3R14_S22_L001_R1_001.fastq.gz -p /var/folders/kh/zt2dzkrx2x7df59wctc6jhqr0000gn/T/q2-CasavaOneEightSingleLanePerSampleDirFmt-40l92u2s/P01-03F-M6-MI-H1-R2-F3R14_S22_L001_R2_001.fastq.gz --front GTGCCAGCMGCCGCGGTAA -G GGACTACHVGGGTWTCTAAT /var/folders/kh/zt2dzkrx2x7df59wctc6jhqr0000gn/T/qiime2/abcdef/data/d6e36ee0-da28-4588-bc05-68643a35716c/data/P01-03F-M6-MI-H1-R2-F3R14_S22_L001_R1_001.fastq.gz /var/folders/kh/zt2dzkrx2x7df59wctc6jhqr0000gn/T/qiime2/abcdef/data/d6e36ee0-da28-4588-bc05-68643a35716c/data/P01-03F-M6-MI-H1-R2-F3R14_S22_L001_R2_001.fastq.gz\ Processing paired-end reads on 3 cores ...\ Done 00:00:00 1,447 reads @ 133.5 \'b5s/read; 0.45 M reads/minute\ Finished in 0.205 s (141.837 \'b5s/read; 0.42 M reads/minute).\ \ === Summary ===\ \ Total read pairs processed: 1,447\ Read 1 with adapter: 1,444 (99.8%)\ Read 2 with adapter: 1,430 (98.8%)\ \ == Read fate breakdown ==\ Pairs that were too short: 0 (0.0%)\ Pairs written (passing filters): 1,447 (100.0%)\ \ Total basepairs processed: 726,394 bp\ Read 1: 363,197 bp\ Read 2: 363,197 bp\ Quality-trimmed: 0 bp (0.0%)\ Read 1: 0 bp\ Read 2: 0 bp\ Total written (filtered): 666,084 bp (91.7%)\ Read 1: 332,891 bp\ Read 2: 333,193 bp\ \ === First read: Adapter 1 ===\ \ Sequence: GTGCCAGCMGCCGCGGTAA; Type: regular 5'; Length: 19; Trimmed: 1444 times\ \ Minimum overlap: 3\ No. of allowed errors:\ 1-9 bp: 0; 10-19 bp: 1\ \ Overview of removed sequences\ length count expect max.err error counts\ 19 3 0.0 1 1 2\ 20 19 0.0 1 2 17\ 21 1415 0.0 1 1326 89\ 22 7 0.0 1 5 2\ \ \ === Second read: Adapter 2 ===\ \ Sequence: GGACTACHVGGGTWTCTAAT; Type: regular 5'; Length: 20; Trimmed: 1430 times\ \ Minimum overlap: 3\ No. of allowed errors:\ 1-9 bp: 0; 10-19 bp: 1; 20 bp: 2\ \ Overview of removed sequences\ length count expect max.err error counts\ 4 1 5.7 0 1\ 20 13 0.0 2 2 10 1\ 21 1412 0.0 2 1349 57 6\ 22 4 0.0 2 1 3\ \ Command: cutadapt --cores 3 --error-rate 0.1 --times 1 --overlap 3 --minimum-length 1 -q 0,0 --quality-base 33 -o /var/folders/kh/zt2dzkrx2x7df59wctc6jhqr0000gn/T/q2-CasavaOneEightSingleLanePerSampleDirFmt-40l92u2s/P01-03G-M6-MI-H2-R1-F3R15_S23_L001_R1_001.fastq.gz -p /var/folders/kh/zt2dzkrx2x7df59wctc6jhqr0000gn/T/q2-CasavaOneEightSingleLanePerSampleDirFmt-40l92u2s/P01-03G-M6-MI-H2-R1-F3R15_S23_L001_R2_001.fastq.gz --front GTGCCAGCMGCCGCGGTAA -G GGACTACHVGGGTWTCTAAT /var/folders/kh/zt2dzkrx2x7df59wctc6jhqr0000gn/T/qiime2/abcdef/data/d6e36ee0-da28-4588-bc05-68643a35716c/data/P01-03G-M6-MI-H2-R1-F3R15_S23_L001_R1_001.fastq.gz /var/folders/kh/zt2dzkrx2x7df59wctc6jhqr0000gn/T/qiime2/abcdef/data/d6e36ee0-da28-4588-bc05-68643a35716c/data/P01-03G-M6-MI-H2-R1-F3R15_S23_L001_R2_001.fastq.gz\ \ This is cutadapt 4.2 with Python 3.8.16\ Command line parameters: --cores 3 --error-rate 0.1 --times 1 --overlap 3 --minimum-length 1 -q 0,0 --quality-base 33 -o /var/folders/kh/zt2dzkrx2x7df59wctc6jhqr0000gn/T/q2-CasavaOneEightSingleLanePerSampleDirFmt-40l92u2s/P01-03G-M6-MI-H2-R1-F3R15_S23_L001_R1_001.fastq.gz -p /var/folders/kh/zt2dzkrx2x7df59wctc6jhqr0000gn/T/q2-CasavaOneEightSingleLanePerSampleDirFmt-40l92u2s/P01-03G-M6-MI-H2-R1-F3R15_S23_L001_R2_001.fastq.gz --front GTGCCAGCMGCCGCGGTAA -G GGACTACHVGGGTWTCTAAT /var/folders/kh/zt2dzkrx2x7df59wctc6jhqr0000gn/T/qiime2/abcdef/data/d6e36ee0-da28-4588-bc05-68643a35716c/data/P01-03G-M6-MI-H2-R1-F3R15_S23_L001_R1_001.fastq.gz /var/folders/kh/zt2dzkrx2x7df59wctc6jhqr0000gn/T/qiime2/abcdef/data/d6e36ee0-da28-4588-bc05-68643a35716c/data/P01-03G-M6-MI-H2-R1-F3R15_S23_L001_R2_001.fastq.gz\ Processing paired-end reads on 3 cores ...\ Done 00:00:00 27 reads @ 6217.5 \'b5s/read; 0.01 M reads/minute\ Finished in 0.173 s (6389.441 \'b5s/read; 0.01 M reads/minute).\ \ === Summary ===\ \ Total read pairs processed: 27\ Read 1 with adapter: 27 (100.0%)\ Read 2 with adapter: 24 (88.9%)\ \ == Read fate breakdown ==\ Pairs that were too short: 0 (0.0%)\ Pairs written (passing filters): 27 (100.0%)\ \ Total basepairs processed: 13,554 bp\ Read 1: 6,777 bp\ Read 2: 6,777 bp\ Quality-trimmed: 0 bp (0.0%)\ Read 1: 0 bp\ Read 2: 0 bp\ Total written (filtered): 12,458 bp (91.9%)\ Read 1: 6,206 bp\ Read 2: 6,252 bp\ \ === First read: Adapter 1 ===\ \ Sequence: GTGCCAGCMGCCGCGGTAA; Type: regular 5'; Length: 19; Trimmed: 27 times\ \ Minimum overlap: 3\ No. of allowed errors:\ 1-9 bp: 0; 10-19 bp: 1\ \ Overview of removed sequences\ length count expect max.err error counts\ 21 23 0.0 1 22 1\ 22 4 0.0 1 3 1\ \ \ === Second read: Adapter 2 ===\ \ Sequence: GGACTACHVGGGTWTCTAAT; Type: regular 5'; Length: 20; Trimmed: 24 times\ \ Minimum overlap: 3\ No. of allowed errors:\ 1-9 bp: 0; 10-19 bp: 1; 20 bp: 2\ \ Overview of removed sequences\ length count expect max.err error counts\ 20 1 0.0 2 0 1\ 21 1 0.0 2 1\ 22 22 0.0 2 19 2 1\ \ Command: cutadapt --cores 3 --error-rate 0.1 --times 1 --overlap 3 --minimum-length 1 -q 0,0 --quality-base 33 -o /var/folders/kh/zt2dzkrx2x7df59wctc6jhqr0000gn/T/q2-CasavaOneEightSingleLanePerSampleDirFmt-40l92u2s/P01-03H-M6-MI-H2-R2-F3R16_S24_L001_R1_001.fastq.gz -p /var/folders/kh/zt2dzkrx2x7df59wctc6jhqr0000gn/T/q2-CasavaOneEightSingleLanePerSampleDirFmt-40l92u2s/P01-03H-M6-MI-H2-R2-F3R16_S24_L001_R2_001.fastq.gz --front GTGCCAGCMGCCGCGGTAA -G GGACTACHVGGGTWTCTAAT /var/folders/kh/zt2dzkrx2x7df59wctc6jhqr0000gn/T/qiime2/abcdef/data/d6e36ee0-da28-4588-bc05-68643a35716c/data/P01-03H-M6-MI-H2-R2-F3R16_S24_L001_R1_001.fastq.gz /var/folders/kh/zt2dzkrx2x7df59wctc6jhqr0000gn/T/qiime2/abcdef/data/d6e36ee0-da28-4588-bc05-68643a35716c/data/P01-03H-M6-MI-H2-R2-F3R16_S24_L001_R2_001.fastq.gz\ \ This is cutadapt 4.2 with Python 3.8.16\ Command line parameters: --cores 3 --error-rate 0.1 --times 1 --overlap 3 --minimum-length 1 -q 0,0 --quality-base 33 -o /var/folders/kh/zt2dzkrx2x7df59wctc6jhqr0000gn/T/q2-CasavaOneEightSingleLanePerSampleDirFmt-40l92u2s/P01-03H-M6-MI-H2-R2-F3R16_S24_L001_R1_001.fastq.gz -p /var/folders/kh/zt2dzkrx2x7df59wctc6jhqr0000gn/T/q2-CasavaOneEightSingleLanePerSampleDirFmt-40l92u2s/P01-03H-M6-MI-H2-R2-F3R16_S24_L001_R2_001.fastq.gz --front GTGCCAGCMGCCGCGGTAA -G GGACTACHVGGGTWTCTAAT /var/folders/kh/zt2dzkrx2x7df59wctc6jhqr0000gn/T/qiime2/abcdef/data/d6e36ee0-da28-4588-bc05-68643a35716c/data/P01-03H-M6-MI-H2-R2-F3R16_S24_L001_R1_001.fastq.gz /var/folders/kh/zt2dzkrx2x7df59wctc6jhqr0000gn/T/qiime2/abcdef/data/d6e36ee0-da28-4588-bc05-68643a35716c/data/P01-03H-M6-MI-H2-R2-F3R16_S24_L001_R2_001.fastq.gz\ Processing paired-end reads on 3 cores ...\ Done 00:00:00 21 reads @ 7756.1 \'b5s/read; 0.01 M reads/minute\ Finished in 0.167 s (7970.254 \'b5s/read; 0.01 M reads/minute).\ \ === Summary ===\ \ Total read pairs processed: 21\ Read 1 with adapter: 21 (100.0%)\ Read 2 with adapter: 21 (100.0%)\ \ == Read fate breakdown ==\ Pairs that were too short: 0 (0.0%)\ Pairs written (passing filters): 21 (100.0%)\ \ Total basepairs processed: 10,542 bp\ Read 1: 5,271 bp\ Read 2: 5,271 bp\ Quality-trimmed: 0 bp (0.0%)\ Read 1: 0 bp\ Read 2: 0 bp\ Total written (filtered): 9,618 bp (91.2%)\ Read 1: 4,827 bp\ Read 2: 4,791 bp\ \ === First read: Adapter 1 ===\ \ Sequence: GTGCCAGCMGCCGCGGTAA; Type: regular 5'; Length: 19; Trimmed: 21 times\ \ Minimum overlap: 3\ No. of allowed errors:\ 1-9 bp: 0; 10-19 bp: 1\ \ Overview of removed sequences\ length count expect max.err error counts\ 21 18 0.0 1 18\ 22 3 0.0 1 2 1\ \ \ === Second read: Adapter 2 ===\ \ Sequence: GGACTACHVGGGTWTCTAAT; Type: regular 5'; Length: 20; Trimmed: 21 times\ \ Minimum overlap: 3\ No. of allowed errors:\ 1-9 bp: 0; 10-19 bp: 1; 20 bp: 2\ \ Overview of removed sequences\ length count expect max.err error counts\ 20 1 0.0 2 1\ 23 20 0.0 2 20\ \ Command: cutadapt --cores 3 --error-rate 0.1 --times 1 --overlap 3 --minimum-length 1 -q 0,0 --quality-base 33 -o /var/folders/kh/zt2dzkrx2x7df59wctc6jhqr0000gn/T/q2-CasavaOneEightSingleLanePerSampleDirFmt-40l92u2s/P01-04A-M7-MI-H1-R1-F4R9_S25_L001_R1_001.fastq.gz -p /var/folders/kh/zt2dzkrx2x7df59wctc6jhqr0000gn/T/q2-CasavaOneEightSingleLanePerSampleDirFmt-40l92u2s/P01-04A-M7-MI-H1-R1-F4R9_S25_L001_R2_001.fastq.gz --front GTGCCAGCMGCCGCGGTAA -G GGACTACHVGGGTWTCTAAT /var/folders/kh/zt2dzkrx2x7df59wctc6jhqr0000gn/T/qiime2/abcdef/data/d6e36ee0-da28-4588-bc05-68643a35716c/data/P01-04A-M7-MI-H1-R1-F4R9_S25_L001_R1_001.fastq.gz /var/folders/kh/zt2dzkrx2x7df59wctc6jhqr0000gn/T/qiime2/abcdef/data/d6e36ee0-da28-4588-bc05-68643a35716c/data/P01-04A-M7-MI-H1-R1-F4R9_S25_L001_R2_001.fastq.gz\ \ This is cutadapt 4.2 with Python 3.8.16\ Command line parameters: --cores 3 --error-rate 0.1 --times 1 --overlap 3 --minimum-length 1 -q 0,0 --quality-base 33 -o /var/folders/kh/zt2dzkrx2x7df59wctc6jhqr0000gn/T/q2-CasavaOneEightSingleLanePerSampleDirFmt-40l92u2s/P01-04A-M7-MI-H1-R1-F4R9_S25_L001_R1_001.fastq.gz -p /var/folders/kh/zt2dzkrx2x7df59wctc6jhqr0000gn/T/q2-CasavaOneEightSingleLanePerSampleDirFmt-40l92u2s/P01-04A-M7-MI-H1-R1-F4R9_S25_L001_R2_001.fastq.gz --front GTGCCAGCMGCCGCGGTAA -G GGACTACHVGGGTWTCTAAT /var/folders/kh/zt2dzkrx2x7df59wctc6jhqr0000gn/T/qiime2/abcdef/data/d6e36ee0-da28-4588-bc05-68643a35716c/data/P01-04A-M7-MI-H1-R1-F4R9_S25_L001_R1_001.fastq.gz /var/folders/kh/zt2dzkrx2x7df59wctc6jhqr0000gn/T/qiime2/abcdef/data/d6e36ee0-da28-4588-bc05-68643a35716c/data/P01-04A-M7-MI-H1-R1-F4R9_S25_L001_R2_001.fastq.gz\ Processing paired-end reads on 3 cores ...\ Done 00:00:00 9,329 reads @ 46.9 \'b5s/read; 1.28 M reads/minute\ Finished in 0.457 s (49.029 \'b5s/read; 1.22 M reads/minute).\ \ === Summary ===\ \ Total read pairs processed: 9,329\ Read 1 with adapter: 9,300 (99.7%)\ Read 2 with adapter: 9,197 (98.6%)\ \ == Read fate breakdown ==\ Pairs that were too short: 0 (0.0%)\ Pairs written (passing filters): 9,329 (100.0%)\ \ Total basepairs processed: 4,683,158 bp\ Read 1: 2,341,579 bp\ Read 2: 2,341,579 bp\ Quality-trimmed: 0 bp (0.0%)\ Read 1: 0 bp\ Read 2: 0 bp\ Total written (filtered): 4,294,787 bp (91.7%)\ Read 1: 2,137,120 bp\ Read 2: 2,157,667 bp\ \ === First read: Adapter 1 ===\ \ Sequence: GTGCCAGCMGCCGCGGTAA; Type: regular 5'; Length: 19; Trimmed: 9300 times\ \ Minimum overlap: 3\ No. of allowed errors:\ 1-9 bp: 0; 10-19 bp: 1\ \ Overview of removed sequences\ length count expect max.err error counts\ 21 162 0.0 1 16 146\ 22 9117 0.0 1 8720 397\ 23 21 0.0 1 9 12\ \ \ === Second read: Adapter 2 ===\ \ Sequence: GGACTACHVGGGTWTCTAAT; Type: regular 5'; Length: 20; Trimmed: 9197 times\ \ Minimum overlap: 3\ No. of allowed errors:\ 1-9 bp: 0; 10-19 bp: 1; 20 bp: 2\ \ Overview of removed sequences\ length count expect max.err error counts\ 18 10 0.0 1 0 1 9\ 19 110 0.0 1 24 82 4\ 20 9059 0.0 2 8620 359 80\ 21 13 0.0 2 2 10 1\ 22 1 0.0 2 0 0 1\ 23 2 0.0 2 0 0 2\ 60 1 0.0 2 1\ 61 1 0.0 2 0 1\ \ Command: cutadapt --cores 3 --error-rate 0.1 --times 1 --overlap 3 --minimum-length 1 -q 0,0 --quality-base 33 -o /var/folders/kh/zt2dzkrx2x7df59wctc6jhqr0000gn/T/q2-CasavaOneEightSingleLanePerSampleDirFmt-40l92u2s/P01-04B-M7-MI-H1-R2-F4R10_S26_L001_R1_001.fastq.gz -p /var/folders/kh/zt2dzkrx2x7df59wctc6jhqr0000gn/T/q2-CasavaOneEightSingleLanePerSampleDirFmt-40l92u2s/P01-04B-M7-MI-H1-R2-F4R10_S26_L001_R2_001.fastq.gz --front GTGCCAGCMGCCGCGGTAA -G GGACTACHVGGGTWTCTAAT /var/folders/kh/zt2dzkrx2x7df59wctc6jhqr0000gn/T/qiime2/abcdef/data/d6e36ee0-da28-4588-bc05-68643a35716c/data/P01-04B-M7-MI-H1-R2-F4R10_S26_L001_R1_001.fastq.gz /var/folders/kh/zt2dzkrx2x7df59wctc6jhqr0000gn/T/qiime2/abcdef/data/d6e36ee0-da28-4588-bc05-68643a35716c/data/P01-04B-M7-MI-H1-R2-F4R10_S26_L001_R2_001.fastq.gz\ \ This is cutadapt 4.2 with Python 3.8.16\ Command line parameters: --cores 3 --error-rate 0.1 --times 1 --overlap 3 --minimum-length 1 -q 0,0 --quality-base 33 -o /var/folders/kh/zt2dzkrx2x7df59wctc6jhqr0000gn/T/q2-CasavaOneEightSingleLanePerSampleDirFmt-40l92u2s/P01-04B-M7-MI-H1-R2-F4R10_S26_L001_R1_001.fastq.gz -p /var/folders/kh/zt2dzkrx2x7df59wctc6jhqr0000gn/T/q2-CasavaOneEightSingleLanePerSampleDirFmt-40l92u2s/P01-04B-M7-MI-H1-R2-F4R10_S26_L001_R2_001.fastq.gz --front GTGCCAGCMGCCGCGGTAA -G GGACTACHVGGGTWTCTAAT /var/folders/kh/zt2dzkrx2x7df59wctc6jhqr0000gn/T/qiime2/abcdef/data/d6e36ee0-da28-4588-bc05-68643a35716c/data/P01-04B-M7-MI-H1-R2-F4R10_S26_L001_R1_001.fastq.gz /var/folders/kh/zt2dzkrx2x7df59wctc6jhqr0000gn/T/qiime2/abcdef/data/d6e36ee0-da28-4588-bc05-68643a35716c/data/P01-04B-M7-MI-H1-R2-F4R10_S26_L001_R2_001.fastq.gz\ Processing paired-end reads on 3 cores ...\ Done 00:00:00 2,378 reads @ 90.9 \'b5s/read; 0.66 M reads/minute\ Finished in 0.227 s (95.572 \'b5s/read; 0.63 M reads/minute).\ \ === Summary ===\ \ Total read pairs processed: 2,378\ Read 1 with adapter: 2,371 (99.7%)\ Read 2 with adapter: 2,333 (98.1%)\ \ == Read fate breakdown ==\ Pairs that were too short: 0 (0.0%)\ Pairs written (passing filters): 2,378 (100.0%)\ \ Total basepairs processed: 1,193,756 bp\ Read 1: 596,878 bp\ Read 2: 596,878 bp\ Quality-trimmed: 0 bp (0.0%)\ Read 1: 0 bp\ Read 2: 0 bp\ Total written (filtered): 1,092,390 bp (91.5%)\ Read 1: 544,750 bp\ Read 2: 547,640 bp\ \ === First read: Adapter 1 ===\ \ Sequence: GTGCCAGCMGCCGCGGTAA; Type: regular 5'; Length: 19; Trimmed: 2371 times\ \ Minimum overlap: 3\ No. of allowed errors:\ 1-9 bp: 0; 10-19 bp: 1\ \ Overview of removed sequences\ length count expect max.err error counts\ 21 38 0.0 1 5 33\ 22 2329 0.0 1 2213 116\ 23 4 0.0 1 2 2\ \ \ === Second read: Adapter 2 ===\ \ Sequence: GGACTACHVGGGTWTCTAAT; Type: regular 5'; Length: 20; Trimmed: 2333 times\ \ Minimum overlap: 3\ No. of allowed errors:\ 1-9 bp: 0; 10-19 bp: 1; 20 bp: 2\ \ Overview of removed sequences\ length count expect max.err error counts\ 16 1 0.0 1 0 1\ 19 1 0.0 1 0 0 1\ 20 41 0.0 2 10 30 1\ 21 2276 0.0 2 2146 98 32\ 22 4 0.0 2 0 2 2\ 23 3 0.0 2 0 1 2\ 60 1 0.0 2 0 1\ 61 2 0.0 2 0 1 1\ 62 4 0.0 2 0 1 3\ \ Command: cutadapt --cores 3 --error-rate 0.1 --times 1 --overlap 3 --minimum-length 1 -q 0,0 --quality-base 33 -o /var/folders/kh/zt2dzkrx2x7df59wctc6jhqr0000gn/T/q2-CasavaOneEightSingleLanePerSampleDirFmt-40l92u2s/P01-04C-M7-MI-H2-R1-F4R11_S27_L001_R1_001.fastq.gz -p /var/folders/kh/zt2dzkrx2x7df59wctc6jhqr0000gn/T/q2-CasavaOneEightSingleLanePerSampleDirFmt-40l92u2s/P01-04C-M7-MI-H2-R1-F4R11_S27_L001_R2_001.fastq.gz --front GTGCCAGCMGCCGCGGTAA -G GGACTACHVGGGTWTCTAAT /var/folders/kh/zt2dzkrx2x7df59wctc6jhqr0000gn/T/qiime2/abcdef/data/d6e36ee0-da28-4588-bc05-68643a35716c/data/P01-04C-M7-MI-H2-R1-F4R11_S27_L001_R1_001.fastq.gz /var/folders/kh/zt2dzkrx2x7df59wctc6jhqr0000gn/T/qiime2/abcdef/data/d6e36ee0-da28-4588-bc05-68643a35716c/data/P01-04C-M7-MI-H2-R1-F4R11_S27_L001_R2_001.fastq.gz\ \ This is cutadapt 4.2 with Python 3.8.16\ Command line parameters: --cores 3 --error-rate 0.1 --times 1 --overlap 3 --minimum-length 1 -q 0,0 --quality-base 33 -o /var/folders/kh/zt2dzkrx2x7df59wctc6jhqr0000gn/T/q2-CasavaOneEightSingleLanePerSampleDirFmt-40l92u2s/P01-04C-M7-MI-H2-R1-F4R11_S27_L001_R1_001.fastq.gz -p /var/folders/kh/zt2dzkrx2x7df59wctc6jhqr0000gn/T/q2-CasavaOneEightSingleLanePerSampleDirFmt-40l92u2s/P01-04C-M7-MI-H2-R1-F4R11_S27_L001_R2_001.fastq.gz --front GTGCCAGCMGCCGCGGTAA -G GGACTACHVGGGTWTCTAAT /var/folders/kh/zt2dzkrx2x7df59wctc6jhqr0000gn/T/qiime2/abcdef/data/d6e36ee0-da28-4588-bc05-68643a35716c/data/P01-04C-M7-MI-H2-R1-F4R11_S27_L001_R1_001.fastq.gz /var/folders/kh/zt2dzkrx2x7df59wctc6jhqr0000gn/T/qiime2/abcdef/data/d6e36ee0-da28-4588-bc05-68643a35716c/data/P01-04C-M7-MI-H2-R1-F4R11_S27_L001_R2_001.fastq.gz\ Processing paired-end reads on 3 cores ...\ Done 00:00:00 175 reads @ 851.0 \'b5s/read; 0.07 M reads/minute\ Finished in 0.158 s (902.600 \'b5s/read; 0.07 M reads/minute).\ \ === Summary ===\ \ Total read pairs processed: 175\ Read 1 with adapter: 174 (99.4%)\ Read 2 with adapter: 169 (96.6%)\ \ == Read fate breakdown ==\ Pairs that were too short: 0 (0.0%)\ Pairs written (passing filters): 175 (100.0%)\ \ Total basepairs processed: 87,850 bp\ Read 1: 43,925 bp\ Read 2: 43,925 bp\ Quality-trimmed: 0 bp (0.0%)\ Read 1: 0 bp\ Read 2: 0 bp\ Total written (filtered): 80,315 bp (91.4%)\ Read 1: 40,102 bp\ Read 2: 40,213 bp\ \ === First read: Adapter 1 ===\ \ Sequence: GTGCCAGCMGCCGCGGTAA; Type: regular 5'; Length: 19; Trimmed: 174 times\ \ Minimum overlap: 3\ No. of allowed errors:\ 1-9 bp: 0; 10-19 bp: 1\ \ Overview of removed sequences\ length count expect max.err error counts\ 21 5 0.0 1 4 1\ 22 169 0.0 1 167 2\ \ \ === Second read: Adapter 2 ===\ \ Sequence: GGACTACHVGGGTWTCTAAT; Type: regular 5'; Length: 20; Trimmed: 169 times\ \ Minimum overlap: 3\ No. of allowed errors:\ 1-9 bp: 0; 10-19 bp: 1; 20 bp: 2\ \ Overview of removed sequences\ length count expect max.err error counts\ 20 2 0.0 2 1 1\ 21 2 0.0 2 0 2\ 22 165 0.0 2 159 5 1\ \ Command: cutadapt --cores 3 --error-rate 0.1 --times 1 --overlap 3 --minimum-length 1 -q 0,0 --quality-base 33 -o /var/folders/kh/zt2dzkrx2x7df59wctc6jhqr0000gn/T/q2-CasavaOneEightSingleLanePerSampleDirFmt-40l92u2s/P01-04D-M7-MI-H2-R2-F4R12_S28_L001_R1_001.fastq.gz -p /var/folders/kh/zt2dzkrx2x7df59wctc6jhqr0000gn/T/q2-CasavaOneEightSingleLanePerSampleDirFmt-40l92u2s/P01-04D-M7-MI-H2-R2-F4R12_S28_L001_R2_001.fastq.gz --front GTGCCAGCMGCCGCGGTAA -G GGACTACHVGGGTWTCTAAT /var/folders/kh/zt2dzkrx2x7df59wctc6jhqr0000gn/T/qiime2/abcdef/data/d6e36ee0-da28-4588-bc05-68643a35716c/data/P01-04D-M7-MI-H2-R2-F4R12_S28_L001_R1_001.fastq.gz /var/folders/kh/zt2dzkrx2x7df59wctc6jhqr0000gn/T/qiime2/abcdef/data/d6e36ee0-da28-4588-bc05-68643a35716c/data/P01-04D-M7-MI-H2-R2-F4R12_S28_L001_R2_001.fastq.gz\ \ This is cutadapt 4.2 with Python 3.8.16\ Command line parameters: --cores 3 --error-rate 0.1 --times 1 --overlap 3 --minimum-length 1 -q 0,0 --quality-base 33 -o /var/folders/kh/zt2dzkrx2x7df59wctc6jhqr0000gn/T/q2-CasavaOneEightSingleLanePerSampleDirFmt-40l92u2s/P01-04D-M7-MI-H2-R2-F4R12_S28_L001_R1_001.fastq.gz -p /var/folders/kh/zt2dzkrx2x7df59wctc6jhqr0000gn/T/q2-CasavaOneEightSingleLanePerSampleDirFmt-40l92u2s/P01-04D-M7-MI-H2-R2-F4R12_S28_L001_R2_001.fastq.gz --front GTGCCAGCMGCCGCGGTAA -G GGACTACHVGGGTWTCTAAT /var/folders/kh/zt2dzkrx2x7df59wctc6jhqr0000gn/T/qiime2/abcdef/data/d6e36ee0-da28-4588-bc05-68643a35716c/data/P01-04D-M7-MI-H2-R2-F4R12_S28_L001_R1_001.fastq.gz /var/folders/kh/zt2dzkrx2x7df59wctc6jhqr0000gn/T/qiime2/abcdef/data/d6e36ee0-da28-4588-bc05-68643a35716c/data/P01-04D-M7-MI-H2-R2-F4R12_S28_L001_R2_001.fastq.gz\ Processing paired-end reads on 3 cores ...\ Done 00:00:00 58 reads @ 2701.8 \'b5s/read; 0.02 M reads/minute\ Finished in 0.163 s (2807.671 \'b5s/read; 0.02 M reads/minute).\ \ === Summary ===\ \ Total read pairs processed: 58\ Read 1 with adapter: 56 (96.6%)\ Read 2 with adapter: 55 (94.8%)\ \ == Read fate breakdown ==\ Pairs that were too short: 0 (0.0%)\ Pairs written (passing filters): 58 (100.0%)\ \ Total basepairs processed: 29,116 bp\ Read 1: 14,558 bp\ Read 2: 14,558 bp\ Quality-trimmed: 0 bp (0.0%)\ Read 1: 0 bp\ Read 2: 0 bp\ Total written (filtered): 26,624 bp (91.4%)\ Read 1: 13,329 bp\ Read 2: 13,295 bp\ \ === First read: Adapter 1 ===\ \ Sequence: GTGCCAGCMGCCGCGGTAA; Type: regular 5'; Length: 19; Trimmed: 56 times\ \ Minimum overlap: 3\ No. of allowed errors:\ 1-9 bp: 0; 10-19 bp: 1\ \ Overview of removed sequences\ length count expect max.err error counts\ 21 3 0.0 1 3\ 22 53 0.0 1 51 2\ \ \ === Second read: Adapter 2 ===\ \ Sequence: GGACTACHVGGGTWTCTAAT; Type: regular 5'; Length: 20; Trimmed: 55 times\ \ Minimum overlap: 3\ No. of allowed errors:\ 1-9 bp: 0; 10-19 bp: 1; 20 bp: 2\ \ Overview of removed sequences\ length count expect max.err error counts\ 21 1 0.0 2 1\ 23 54 0.0 2 52 2\ \ Command: cutadapt --cores 3 --error-rate 0.1 --times 1 --overlap 3 --minimum-length 1 -q 0,0 --quality-base 33 -o /var/folders/kh/zt2dzkrx2x7df59wctc6jhqr0000gn/T/q2-CasavaOneEightSingleLanePerSampleDirFmt-40l92u2s/P01-04E-M8-MI-H1-R1-F4R13_S29_L001_R1_001.fastq.gz -p /var/folders/kh/zt2dzkrx2x7df59wctc6jhqr0000gn/T/q2-CasavaOneEightSingleLanePerSampleDirFmt-40l92u2s/P01-04E-M8-MI-H1-R1-F4R13_S29_L001_R2_001.fastq.gz --front GTGCCAGCMGCCGCGGTAA -G GGACTACHVGGGTWTCTAAT /var/folders/kh/zt2dzkrx2x7df59wctc6jhqr0000gn/T/qiime2/abcdef/data/d6e36ee0-da28-4588-bc05-68643a35716c/data/P01-04E-M8-MI-H1-R1-F4R13_S29_L001_R1_001.fastq.gz /var/folders/kh/zt2dzkrx2x7df59wctc6jhqr0000gn/T/qiime2/abcdef/data/d6e36ee0-da28-4588-bc05-68643a35716c/data/P01-04E-M8-MI-H1-R1-F4R13_S29_L001_R2_001.fastq.gz\ \ This is cutadapt 4.2 with Python 3.8.16\ Command line parameters: --cores 3 --error-rate 0.1 --times 1 --overlap 3 --minimum-length 1 -q 0,0 --quality-base 33 -o /var/folders/kh/zt2dzkrx2x7df59wctc6jhqr0000gn/T/q2-CasavaOneEightSingleLanePerSampleDirFmt-40l92u2s/P01-04E-M8-MI-H1-R1-F4R13_S29_L001_R1_001.fastq.gz -p /var/folders/kh/zt2dzkrx2x7df59wctc6jhqr0000gn/T/q2-CasavaOneEightSingleLanePerSampleDirFmt-40l92u2s/P01-04E-M8-MI-H1-R1-F4R13_S29_L001_R2_001.fastq.gz --front GTGCCAGCMGCCGCGGTAA -G GGACTACHVGGGTWTCTAAT /var/folders/kh/zt2dzkrx2x7df59wctc6jhqr0000gn/T/qiime2/abcdef/data/d6e36ee0-da28-4588-bc05-68643a35716c/data/P01-04E-M8-MI-H1-R1-F4R13_S29_L001_R1_001.fastq.gz /var/folders/kh/zt2dzkrx2x7df59wctc6jhqr0000gn/T/qiime2/abcdef/data/d6e36ee0-da28-4588-bc05-68643a35716c/data/P01-04E-M8-MI-H1-R1-F4R13_S29_L001_R2_001.fastq.gz\ Processing paired-end reads on 3 cores ...\ Done 00:00:00 2,452 reads @ 95.8 \'b5s/read; 0.63 M reads/minute\ Finished in 0.249 s (101.540 \'b5s/read; 0.59 M reads/minute).\ \ === Summary ===\ \ Total read pairs processed: 2,452\ Read 1 with adapter: 2,445 (99.7%)\ Read 2 with adapter: 2,427 (99.0%)\ \ == Read fate breakdown ==\ Pairs that were too short: 0 (0.0%)\ Pairs written (passing filters): 2,452 (100.0%)\ \ Total basepairs processed: 1,230,904 bp\ Read 1: 615,452 bp\ Read 2: 615,452 bp\ Quality-trimmed: 0 bp (0.0%)\ Read 1: 0 bp\ Read 2: 0 bp\ Total written (filtered): 1,128,633 bp (91.7%)\ Read 1: 561,695 bp\ Read 2: 566,938 bp\ \ === First read: Adapter 1 ===\ \ Sequence: GTGCCAGCMGCCGCGGTAA; Type: regular 5'; Length: 19; Trimmed: 2445 times\ \ Minimum overlap: 3\ No. of allowed errors:\ 1-9 bp: 0; 10-19 bp: 1\ \ Overview of removed sequences\ length count expect max.err error counts\ 21 38 0.0 1 5 33\ 22 2402 0.0 1 2292 110\ 23 5 0.0 1 1 4\ \ \ === Second read: Adapter 2 ===\ \ Sequence: GGACTACHVGGGTWTCTAAT; Type: regular 5'; Length: 20; Trimmed: 2427 times\ \ Minimum overlap: 3\ No. of allowed errors:\ 1-9 bp: 0; 10-19 bp: 1; 20 bp: 2\ \ Overview of removed sequences\ length count expect max.err error counts\ 18 4 0.0 1 0 0 4\ 19 29 0.0 1 4 23 2\ 20 2386 0.0 2 2273 93 20\ 21 6 0.0 2 3 3\ 22 1 0.0 2 0 1\ 23 1 0.0 2 1\ \ Command: cutadapt --cores 3 --error-rate 0.1 --times 1 --overlap 3 --minimum-length 1 -q 0,0 --quality-base 33 -o /var/folders/kh/zt2dzkrx2x7df59wctc6jhqr0000gn/T/q2-CasavaOneEightSingleLanePerSampleDirFmt-40l92u2s/P01-04F-M8-MI-H1-R2-F4R14_S30_L001_R1_001.fastq.gz -p /var/folders/kh/zt2dzkrx2x7df59wctc6jhqr0000gn/T/q2-CasavaOneEightSingleLanePerSampleDirFmt-40l92u2s/P01-04F-M8-MI-H1-R2-F4R14_S30_L001_R2_001.fastq.gz --front GTGCCAGCMGCCGCGGTAA -G GGACTACHVGGGTWTCTAAT /var/folders/kh/zt2dzkrx2x7df59wctc6jhqr0000gn/T/qiime2/abcdef/data/d6e36ee0-da28-4588-bc05-68643a35716c/data/P01-04F-M8-MI-H1-R2-F4R14_S30_L001_R1_001.fastq.gz /var/folders/kh/zt2dzkrx2x7df59wctc6jhqr0000gn/T/qiime2/abcdef/data/d6e36ee0-da28-4588-bc05-68643a35716c/data/P01-04F-M8-MI-H1-R2-F4R14_S30_L001_R2_001.fastq.gz\ \ This is cutadapt 4.2 with Python 3.8.16\ Command line parameters: --cores 3 --error-rate 0.1 --times 1 --overlap 3 --minimum-length 1 -q 0,0 --quality-base 33 -o /var/folders/kh/zt2dzkrx2x7df59wctc6jhqr0000gn/T/q2-CasavaOneEightSingleLanePerSampleDirFmt-40l92u2s/P01-04F-M8-MI-H1-R2-F4R14_S30_L001_R1_001.fastq.gz -p /var/folders/kh/zt2dzkrx2x7df59wctc6jhqr0000gn/T/q2-CasavaOneEightSingleLanePerSampleDirFmt-40l92u2s/P01-04F-M8-MI-H1-R2-F4R14_S30_L001_R2_001.fastq.gz --front GTGCCAGCMGCCGCGGTAA -G GGACTACHVGGGTWTCTAAT /var/folders/kh/zt2dzkrx2x7df59wctc6jhqr0000gn/T/qiime2/abcdef/data/d6e36ee0-da28-4588-bc05-68643a35716c/data/P01-04F-M8-MI-H1-R2-F4R14_S30_L001_R1_001.fastq.gz /var/folders/kh/zt2dzkrx2x7df59wctc6jhqr0000gn/T/qiime2/abcdef/data/d6e36ee0-da28-4588-bc05-68643a35716c/data/P01-04F-M8-MI-H1-R2-F4R14_S30_L001_R2_001.fastq.gz\ Processing paired-end reads on 3 cores ...\ Done 00:00:00 781 reads @ 236.1 \'b5s/read; 0.25 M reads/minute\ Finished in 0.197 s (252.248 \'b5s/read; 0.24 M reads/minute).\ \ === Summary ===\ \ Total read pairs processed: 781\ Read 1 with adapter: 780 (99.9%)\ Read 2 with adapter: 755 (96.7%)\ \ == Read fate breakdown ==\ Pairs that were too short: 0 (0.0%)\ Pairs written (passing filters): 781 (100.0%)\ \ Total basepairs processed: 392,062 bp\ Read 1: 196,031 bp\ Read 2: 196,031 bp\ Quality-trimmed: 0 bp (0.0%)\ Read 1: 0 bp\ Read 2: 0 bp\ Total written (filtered): 359,072 bp (91.6%)\ Read 1: 178,889 bp\ Read 2: 180,183 bp\ \ === First read: Adapter 1 ===\ \ Sequence: GTGCCAGCMGCCGCGGTAA; Type: regular 5'; Length: 19; Trimmed: 780 times\ \ Minimum overlap: 3\ No. of allowed errors:\ 1-9 bp: 0; 10-19 bp: 1\ \ Overview of removed sequences\ length count expect max.err error counts\ 21 20 0.0 1 5 15\ 22 758 0.0 1 734 24\ 23 2 0.0 1 0 2\ \ \ === Second read: Adapter 2 ===\ \ Sequence: GGACTACHVGGGTWTCTAAT; Type: regular 5'; Length: 20; Trimmed: 755 times\ \ Minimum overlap: 3\ No. of allowed errors:\ 1-9 bp: 0; 10-19 bp: 1; 20 bp: 2\ \ Overview of removed sequences\ length count expect max.err error counts\ 19 1 0.0 1 0 0 1\ 20 7 0.0 2 1 5 1\ 21 745 0.0 2 692 48 5\ 22 2 0.0 2 1 1\ \ Command: cutadapt --cores 3 --error-rate 0.1 --times 1 --overlap 3 --minimum-length 1 -q 0,0 --quality-base 33 -o /var/folders/kh/zt2dzkrx2x7df59wctc6jhqr0000gn/T/q2-CasavaOneEightSingleLanePerSampleDirFmt-40l92u2s/P01-04G-M8-MI-H2-R1-F4R15_S31_L001_R1_001.fastq.gz -p /var/folders/kh/zt2dzkrx2x7df59wctc6jhqr0000gn/T/q2-CasavaOneEightSingleLanePerSampleDirFmt-40l92u2s/P01-04G-M8-MI-H2-R1-F4R15_S31_L001_R2_001.fastq.gz --front GTGCCAGCMGCCGCGGTAA -G GGACTACHVGGGTWTCTAAT /var/folders/kh/zt2dzkrx2x7df59wctc6jhqr0000gn/T/qiime2/abcdef/data/d6e36ee0-da28-4588-bc05-68643a35716c/data/P01-04G-M8-MI-H2-R1-F4R15_S31_L001_R1_001.fastq.gz /var/folders/kh/zt2dzkrx2x7df59wctc6jhqr0000gn/T/qiime2/abcdef/data/d6e36ee0-da28-4588-bc05-68643a35716c/data/P01-04G-M8-MI-H2-R1-F4R15_S31_L001_R2_001.fastq.gz\ \ This is cutadapt 4.2 with Python 3.8.16\ Command line parameters: --cores 3 --error-rate 0.1 --times 1 --overlap 3 --minimum-length 1 -q 0,0 --quality-base 33 -o /var/folders/kh/zt2dzkrx2x7df59wctc6jhqr0000gn/T/q2-CasavaOneEightSingleLanePerSampleDirFmt-40l92u2s/P01-04G-M8-MI-H2-R1-F4R15_S31_L001_R1_001.fastq.gz -p /var/folders/kh/zt2dzkrx2x7df59wctc6jhqr0000gn/T/q2-CasavaOneEightSingleLanePerSampleDirFmt-40l92u2s/P01-04G-M8-MI-H2-R1-F4R15_S31_L001_R2_001.fastq.gz --front GTGCCAGCMGCCGCGGTAA -G GGACTACHVGGGTWTCTAAT /var/folders/kh/zt2dzkrx2x7df59wctc6jhqr0000gn/T/qiime2/abcdef/data/d6e36ee0-da28-4588-bc05-68643a35716c/data/P01-04G-M8-MI-H2-R1-F4R15_S31_L001_R1_001.fastq.gz /var/folders/kh/zt2dzkrx2x7df59wctc6jhqr0000gn/T/qiime2/abcdef/data/d6e36ee0-da28-4588-bc05-68643a35716c/data/P01-04G-M8-MI-H2-R1-F4R15_S31_L001_R2_001.fastq.gz\ Processing paired-end reads on 3 cores ...\ Done 00:00:00 20 reads @ 7362.2 \'b5s/read; 0.01 M reads/minute\ Finished in 0.151 s (7568.145 \'b5s/read; 0.01 M reads/minute).\ \ === Summary ===\ \ Total read pairs processed: 20\ Read 1 with adapter: 20 (100.0%)\ Read 2 with adapter: 17 (85.0%)\ \ == Read fate breakdown ==\ Pairs that were too short: 0 (0.0%)\ Pairs written (passing filters): 20 (100.0%)\ \ Total basepairs processed: 10,040 bp\ Read 1: 5,020 bp\ Read 2: 5,020 bp\ Quality-trimmed: 0 bp (0.0%)\ Read 1: 0 bp\ Read 2: 0 bp\ Total written (filtered): 9,243 bp (92.1%)\ Read 1: 4,582 bp\ Read 2: 4,661 bp\ \ === First read: Adapter 1 ===\ \ Sequence: GTGCCAGCMGCCGCGGTAA; Type: regular 5'; Length: 19; Trimmed: 20 times\ \ Minimum overlap: 3\ No. of allowed errors:\ 1-9 bp: 0; 10-19 bp: 1\ \ Overview of removed sequences\ length count expect max.err error counts\ 21 2 0.0 1 1 1\ 22 18 0.0 1 18\ \ \ === Second read: Adapter 2 ===\ \ Sequence: GGACTACHVGGGTWTCTAAT; Type: regular 5'; Length: 20; Trimmed: 17 times\ \ Minimum overlap: 3\ No. of allowed errors:\ 1-9 bp: 0; 10-19 bp: 1; 20 bp: 2\ \ Overview of removed sequences\ length count expect max.err error counts\ 20 7 0.0 2 6 1\ 21 1 0.0 2 0 0 1\ 22 9 0.0 2 9\ \ Command: cutadapt --cores 3 --error-rate 0.1 --times 1 --overlap 3 --minimum-length 1 -q 0,0 --quality-base 33 -o /var/folders/kh/zt2dzkrx2x7df59wctc6jhqr0000gn/T/q2-CasavaOneEightSingleLanePerSampleDirFmt-40l92u2s/P01-04H-M8-MI-H2-R2-F4R16_S32_L001_R1_001.fastq.gz -p /var/folders/kh/zt2dzkrx2x7df59wctc6jhqr0000gn/T/q2-CasavaOneEightSingleLanePerSampleDirFmt-40l92u2s/P01-04H-M8-MI-H2-R2-F4R16_S32_L001_R2_001.fastq.gz --front GTGCCAGCMGCCGCGGTAA -G GGACTACHVGGGTWTCTAAT /var/folders/kh/zt2dzkrx2x7df59wctc6jhqr0000gn/T/qiime2/abcdef/data/d6e36ee0-da28-4588-bc05-68643a35716c/data/P01-04H-M8-MI-H2-R2-F4R16_S32_L001_R1_001.fastq.gz /var/folders/kh/zt2dzkrx2x7df59wctc6jhqr0000gn/T/qiime2/abcdef/data/d6e36ee0-da28-4588-bc05-68643a35716c/data/P01-04H-M8-MI-H2-R2-F4R16_S32_L001_R2_001.fastq.gz\ \ This is cutadapt 4.2 with Python 3.8.16\ Command line parameters: --cores 3 --error-rate 0.1 --times 1 --overlap 3 --minimum-length 1 -q 0,0 --quality-base 33 -o /var/folders/kh/zt2dzkrx2x7df59wctc6jhqr0000gn/T/q2-CasavaOneEightSingleLanePerSampleDirFmt-40l92u2s/P01-04H-M8-MI-H2-R2-F4R16_S32_L001_R1_001.fastq.gz -p /var/folders/kh/zt2dzkrx2x7df59wctc6jhqr0000gn/T/q2-CasavaOneEightSingleLanePerSampleDirFmt-40l92u2s/P01-04H-M8-MI-H2-R2-F4R16_S32_L001_R2_001.fastq.gz --front GTGCCAGCMGCCGCGGTAA -G GGACTACHVGGGTWTCTAAT /var/folders/kh/zt2dzkrx2x7df59wctc6jhqr0000gn/T/qiime2/abcdef/data/d6e36ee0-da28-4588-bc05-68643a35716c/data/P01-04H-M8-MI-H2-R2-F4R16_S32_L001_R1_001.fastq.gz /var/folders/kh/zt2dzkrx2x7df59wctc6jhqr0000gn/T/qiime2/abcdef/data/d6e36ee0-da28-4588-bc05-68643a35716c/data/P01-04H-M8-MI-H2-R2-F4R16_S32_L001_R2_001.fastq.gz\ Processing paired-end reads on 3 cores ...\ Done 00:00:00 94 reads @ 1645.9 \'b5s/read; 0.04 M reads/minute\ Finished in 0.161 s (1712.873 \'b5s/read; 0.04 M reads/minute).\ \ === Summary ===\ \ Total read pairs processed: 94\ Read 1 with adapter: 94 (100.0%)\ Read 2 with adapter: 90 (95.7%)\ \ == Read fate breakdown ==\ Pairs that were too short: 0 (0.0%)\ Pairs written (passing filters): 94 (100.0%)\ \ Total basepairs processed: 47,188 bp\ Read 1: 23,594 bp\ Read 2: 23,594 bp\ Quality-trimmed: 0 bp (0.0%)\ Read 1: 0 bp\ Read 2: 0 bp\ Total written (filtered): 43,091 bp (91.3%)\ Read 1: 21,537 bp\ Read 2: 21,554 bp\ \ === First read: Adapter 1 ===\ \ Sequence: GTGCCAGCMGCCGCGGTAA; Type: regular 5'; Length: 19; Trimmed: 94 times\ \ Minimum overlap: 3\ No. of allowed errors:\ 1-9 bp: 0; 10-19 bp: 1\ \ Overview of removed sequences\ length count expect max.err error counts\ 19 1 0.0 1 1\ 21 8 0.0 1 6 2\ 22 85 0.0 1 81 4\ \ \ === Second read: Adapter 2 ===\ \ Sequence: GGACTACHVGGGTWTCTAAT; Type: regular 5'; Length: 20; Trimmed: 90 times\ \ Minimum overlap: 3\ No. of allowed errors:\ 1-9 bp: 0; 10-19 bp: 1; 20 bp: 2\ \ Overview of removed sequences\ length count expect max.err error counts\ 3 1 1.5 0 1\ 20 3 0.0 2 3\ 22 1 0.0 2 0 1\ 23 85 0.0 2 78 3 4\ \ Command: cutadapt --cores 3 --error-rate 0.1 --times 1 --overlap 3 --minimum-length 1 -q 0,0 --quality-base 33 -o /var/folders/kh/zt2dzkrx2x7df59wctc6jhqr0000gn/T/q2-CasavaOneEightSingleLanePerSampleDirFmt-40l92u2s/P01-05A-M1-SHAM-Int-R1-F5R9_S33_L001_R1_001.fastq.gz -p /var/folders/kh/zt2dzkrx2x7df59wctc6jhqr0000gn/T/q2-CasavaOneEightSingleLanePerSampleDirFmt-40l92u2s/P01-05A-M1-SHAM-Int-R1-F5R9_S33_L001_R2_001.fastq.gz --front GTGCCAGCMGCCGCGGTAA -G GGACTACHVGGGTWTCTAAT /var/folders/kh/zt2dzkrx2x7df59wctc6jhqr0000gn/T/qiime2/abcdef/data/d6e36ee0-da28-4588-bc05-68643a35716c/data/P01-05A-M1-SHAM-Int-R1-F5R9_S33_L001_R1_001.fastq.gz /var/folders/kh/zt2dzkrx2x7df59wctc6jhqr0000gn/T/qiime2/abcdef/data/d6e36ee0-da28-4588-bc05-68643a35716c/data/P01-05A-M1-SHAM-Int-R1-F5R9_S33_L001_R2_001.fastq.gz\ \ This is cutadapt 4.2 with Python 3.8.16\ Command line parameters: --cores 3 --error-rate 0.1 --times 1 --overlap 3 --minimum-length 1 -q 0,0 --quality-base 33 -o /var/folders/kh/zt2dzkrx2x7df59wctc6jhqr0000gn/T/q2-CasavaOneEightSingleLanePerSampleDirFmt-40l92u2s/P01-05A-M1-SHAM-Int-R1-F5R9_S33_L001_R1_001.fastq.gz -p /var/folders/kh/zt2dzkrx2x7df59wctc6jhqr0000gn/T/q2-CasavaOneEightSingleLanePerSampleDirFmt-40l92u2s/P01-05A-M1-SHAM-Int-R1-F5R9_S33_L001_R2_001.fastq.gz --front GTGCCAGCMGCCGCGGTAA -G GGACTACHVGGGTWTCTAAT /var/folders/kh/zt2dzkrx2x7df59wctc6jhqr0000gn/T/qiime2/abcdef/data/d6e36ee0-da28-4588-bc05-68643a35716c/data/P01-05A-M1-SHAM-Int-R1-F5R9_S33_L001_R1_001.fastq.gz /var/folders/kh/zt2dzkrx2x7df59wctc6jhqr0000gn/T/qiime2/abcdef/data/d6e36ee0-da28-4588-bc05-68643a35716c/data/P01-05A-M1-SHAM-Int-R1-F5R9_S33_L001_R2_001.fastq.gz\ Processing paired-end reads on 3 cores ...\ Done 00:00:00 18 reads @ 8236.2 \'b5s/read; 0.01 M reads/minute\ Finished in 0.152 s (8463.555 \'b5s/read; 0.01 M reads/minute).\ \ === Summary ===\ \ Total read pairs processed: 18\ Read 1 with adapter: 18 (100.0%)\ Read 2 with adapter: 17 (94.4%)\ \ == Read fate breakdown ==\ Pairs that were too short: 0 (0.0%)\ Pairs written (passing filters): 18 (100.0%)\ \ Total basepairs processed: 9,036 bp\ Read 1: 4,518 bp\ Read 2: 4,518 bp\ Quality-trimmed: 0 bp (0.0%)\ Read 1: 0 bp\ Read 2: 0 bp\ Total written (filtered): 8,346 bp (92.4%)\ Read 1: 4,173 bp\ Read 2: 4,173 bp\ \ === First read: Adapter 1 ===\ \ Sequence: GTGCCAGCMGCCGCGGTAA; Type: regular 5'; Length: 19; Trimmed: 18 times\ \ Minimum overlap: 3\ No. of allowed errors:\ 1-9 bp: 0; 10-19 bp: 1\ \ Overview of removed sequences\ length count expect max.err error counts\ 19 17 0.0 1 16 1\ 22 1 0.0 1 1\ \ \ === Second read: Adapter 2 ===\ \ Sequence: GGACTACHVGGGTWTCTAAT; Type: regular 5'; Length: 20; Trimmed: 17 times\ \ Minimum overlap: 3\ No. of allowed errors:\ 1-9 bp: 0; 10-19 bp: 1; 20 bp: 2\ \ Overview of removed sequences\ length count expect max.err error counts\ 20 15 0.0 2 13 1 1\ 22 1 0.0 2 1\ 23 1 0.0 2 1\ \ Command: cutadapt --cores 3 --error-rate 0.1 --times 1 --overlap 3 --minimum-length 1 -q 0,0 --quality-base 33 -o /var/folders/kh/zt2dzkrx2x7df59wctc6jhqr0000gn/T/q2-CasavaOneEightSingleLanePerSampleDirFmt-40l92u2s/P01-05B-M1-SHAM-Int-R2-F5R10_S34_L001_R1_001.fastq.gz -p /var/folders/kh/zt2dzkrx2x7df59wctc6jhqr0000gn/T/q2-CasavaOneEightSingleLanePerSampleDirFmt-40l92u2s/P01-05B-M1-SHAM-Int-R2-F5R10_S34_L001_R2_001.fastq.gz --front GTGCCAGCMGCCGCGGTAA -G GGACTACHVGGGTWTCTAAT /var/folders/kh/zt2dzkrx2x7df59wctc6jhqr0000gn/T/qiime2/abcdef/data/d6e36ee0-da28-4588-bc05-68643a35716c/data/P01-05B-M1-SHAM-Int-R2-F5R10_S34_L001_R1_001.fastq.gz /var/folders/kh/zt2dzkrx2x7df59wctc6jhqr0000gn/T/qiime2/abcdef/data/d6e36ee0-da28-4588-bc05-68643a35716c/data/P01-05B-M1-SHAM-Int-R2-F5R10_S34_L001_R2_001.fastq.gz\ \ This is cutadapt 4.2 with Python 3.8.16\ Command line parameters: --cores 3 --error-rate 0.1 --times 1 --overlap 3 --minimum-length 1 -q 0,0 --quality-base 33 -o /var/folders/kh/zt2dzkrx2x7df59wctc6jhqr0000gn/T/q2-CasavaOneEightSingleLanePerSampleDirFmt-40l92u2s/P01-05B-M1-SHAM-Int-R2-F5R10_S34_L001_R1_001.fastq.gz -p /var/folders/kh/zt2dzkrx2x7df59wctc6jhqr0000gn/T/q2-CasavaOneEightSingleLanePerSampleDirFmt-40l92u2s/P01-05B-M1-SHAM-Int-R2-F5R10_S34_L001_R2_001.fastq.gz --front GTGCCAGCMGCCGCGGTAA -G GGACTACHVGGGTWTCTAAT /var/folders/kh/zt2dzkrx2x7df59wctc6jhqr0000gn/T/qiime2/abcdef/data/d6e36ee0-da28-4588-bc05-68643a35716c/data/P01-05B-M1-SHAM-Int-R2-F5R10_S34_L001_R1_001.fastq.gz /var/folders/kh/zt2dzkrx2x7df59wctc6jhqr0000gn/T/qiime2/abcdef/data/d6e36ee0-da28-4588-bc05-68643a35716c/data/P01-05B-M1-SHAM-Int-R2-F5R10_S34_L001_R2_001.fastq.gz\ Processing paired-end reads on 3 cores ...\ Done 00:00:00 65 reads @ 2366.2 \'b5s/read; 0.03 M reads/minute\ Finished in 0.159 s (2452.018 \'b5s/read; 0.02 M reads/minute).\ \ === Summary ===\ \ Total read pairs processed: 65\ Read 1 with adapter: 65 (100.0%)\ Read 2 with adapter: 59 (90.8%)\ \ == Read fate breakdown ==\ Pairs that were too short: 0 (0.0%)\ Pairs written (passing filters): 65 (100.0%)\ \ Total basepairs processed: 32,630 bp\ Read 1: 16,315 bp\ Read 2: 16,315 bp\ Quality-trimmed: 0 bp (0.0%)\ Read 1: 0 bp\ Read 2: 0 bp\ Total written (filtered): 30,131 bp (92.3%)\ Read 1: 15,066 bp\ Read 2: 15,065 bp\ \ === First read: Adapter 1 ===\ \ Sequence: GTGCCAGCMGCCGCGGTAA; Type: regular 5'; Length: 19; Trimmed: 65 times\ \ Minimum overlap: 3\ No. of allowed errors:\ 1-9 bp: 0; 10-19 bp: 1\ \ Overview of removed sequences\ length count expect max.err error counts\ 18 2 0.0 1 1 1\ 19 57 0.0 1 55 2\ 21 2 0.0 1 2\ 22 4 0.0 1 4\ \ \ === Second read: Adapter 2 ===\ \ Sequence: GGACTACHVGGGTWTCTAAT; Type: regular 5'; Length: 20; Trimmed: 59 times\ \ Minimum overlap: 3\ No. of allowed errors:\ 1-9 bp: 0; 10-19 bp: 1; 20 bp: 2\ \ Overview of removed sequences\ length count expect max.err error counts\ 20 6 0.0 2 2 4\ 21 43 0.0 2 41 0 2\ 22 3 0.0 2 3\ 23 7 0.0 2 4 2 1\ \ Command: cutadapt --cores 3 --error-rate 0.1 --times 1 --overlap 3 --minimum-length 1 -q 0,0 --quality-base 33 -o /var/folders/kh/zt2dzkrx2x7df59wctc6jhqr0000gn/T/q2-CasavaOneEightSingleLanePerSampleDirFmt-40l92u2s/P01-05C-M2-SHAM-Int-R1-F5R11_S35_L001_R1_001.fastq.gz -p /var/folders/kh/zt2dzkrx2x7df59wctc6jhqr0000gn/T/q2-CasavaOneEightSingleLanePerSampleDirFmt-40l92u2s/P01-05C-M2-SHAM-Int-R1-F5R11_S35_L001_R2_001.fastq.gz --front GTGCCAGCMGCCGCGGTAA -G GGACTACHVGGGTWTCTAAT /var/folders/kh/zt2dzkrx2x7df59wctc6jhqr0000gn/T/qiime2/abcdef/data/d6e36ee0-da28-4588-bc05-68643a35716c/data/P01-05C-M2-SHAM-Int-R1-F5R11_S35_L001_R1_001.fastq.gz /var/folders/kh/zt2dzkrx2x7df59wctc6jhqr0000gn/T/qiime2/abcdef/data/d6e36ee0-da28-4588-bc05-68643a35716c/data/P01-05C-M2-SHAM-Int-R1-F5R11_S35_L001_R2_001.fastq.gz\ \ This is cutadapt 4.2 with Python 3.8.16\ Command line parameters: --cores 3 --error-rate 0.1 --times 1 --overlap 3 --minimum-length 1 -q 0,0 --quality-base 33 -o /var/folders/kh/zt2dzkrx2x7df59wctc6jhqr0000gn/T/q2-CasavaOneEightSingleLanePerSampleDirFmt-40l92u2s/P01-05C-M2-SHAM-Int-R1-F5R11_S35_L001_R1_001.fastq.gz -p /var/folders/kh/zt2dzkrx2x7df59wctc6jhqr0000gn/T/q2-CasavaOneEightSingleLanePerSampleDirFmt-40l92u2s/P01-05C-M2-SHAM-Int-R1-F5R11_S35_L001_R2_001.fastq.gz --front GTGCCAGCMGCCGCGGTAA -G GGACTACHVGGGTWTCTAAT /var/folders/kh/zt2dzkrx2x7df59wctc6jhqr0000gn/T/qiime2/abcdef/data/d6e36ee0-da28-4588-bc05-68643a35716c/data/P01-05C-M2-SHAM-Int-R1-F5R11_S35_L001_R1_001.fastq.gz /var/folders/kh/zt2dzkrx2x7df59wctc6jhqr0000gn/T/qiime2/abcdef/data/d6e36ee0-da28-4588-bc05-68643a35716c/data/P01-05C-M2-SHAM-Int-R1-F5R11_S35_L001_R2_001.fastq.gz\ Processing paired-end reads on 3 cores ...\ Done 00:00:00 16,788 reads @ 38.5 \'b5s/read; 1.56 M reads/minute\ Finished in 0.663 s (39.486 \'b5s/read; 1.52 M reads/minute).\ \ === Summary ===\ \ Total read pairs processed: 16,788\ Read 1 with adapter: 16,747 (99.8%)\ Read 2 with adapter: 16,648 (99.2%)\ \ == Read fate breakdown ==\ Pairs that were too short: 0 (0.0%)\ Pairs written (passing filters): 16,788 (100.0%)\ \ Total basepairs processed: 8,427,576 bp\ Read 1: 4,213,788 bp\ Read 2: 4,213,788 bp\ Quality-trimmed: 0 bp (0.0%)\ Read 1: 0 bp\ Read 2: 0 bp\ Total written (filtered): 7,743,320 bp (91.9%)\ Read 1: 3,895,722 bp\ Read 2: 3,847,598 bp\ \ === First read: Adapter 1 ===\ \ Sequence: GTGCCAGCMGCCGCGGTAA; Type: regular 5'; Length: 19; Trimmed: 16747 times\ \ Minimum overlap: 3\ No. of allowed errors:\ 1-9 bp: 0; 10-19 bp: 1\ \ Overview of removed sequences\ length count expect max.err error counts\ 17 5 0.0 1 3 2\ 18 176 0.0 1 19 157\ 19 16531 0.0 1 15833 698\ 20 20 0.0 1 2 18\ 21 6 0.0 1 6\ 22 9 0.0 1 9\ \ \ === Second read: Adapter 2 ===\ \ Sequence: GGACTACHVGGGTWTCTAAT; Type: regular 5'; Length: 20; Trimmed: 16648 times\ \ Minimum overlap: 3\ No. of allowed errors:\ 1-9 bp: 0; 10-19 bp: 1; 20 bp: 2\ \ Overview of removed sequences\ length count expect max.err error counts\ 3 1 262.3 0 1\ 20 18 0.0 2 4 2 12\ 21 122 0.0 2 21 100 1\ 22 16426 0.0 2 15925 431 70\ 23 80 0.0 2 39 37 4\ 53 1 0.0 2 0 1\ \ Command: cutadapt --cores 3 --error-rate 0.1 --times 1 --overlap 3 --minimum-length 1 -q 0,0 --quality-base 33 -o /var/folders/kh/zt2dzkrx2x7df59wctc6jhqr0000gn/T/q2-CasavaOneEightSingleLanePerSampleDirFmt-40l92u2s/P01-05D-M2-SHAM-Int-R2-F5R12_S36_L001_R1_001.fastq.gz -p /var/folders/kh/zt2dzkrx2x7df59wctc6jhqr0000gn/T/q2-CasavaOneEightSingleLanePerSampleDirFmt-40l92u2s/P01-05D-M2-SHAM-Int-R2-F5R12_S36_L001_R2_001.fastq.gz --front GTGCCAGCMGCCGCGGTAA -G GGACTACHVGGGTWTCTAAT /var/folders/kh/zt2dzkrx2x7df59wctc6jhqr0000gn/T/qiime2/abcdef/data/d6e36ee0-da28-4588-bc05-68643a35716c/data/P01-05D-M2-SHAM-Int-R2-F5R12_S36_L001_R1_001.fastq.gz /var/folders/kh/zt2dzkrx2x7df59wctc6jhqr0000gn/T/qiime2/abcdef/data/d6e36ee0-da28-4588-bc05-68643a35716c/data/P01-05D-M2-SHAM-Int-R2-F5R12_S36_L001_R2_001.fastq.gz\ \ This is cutadapt 4.2 with Python 3.8.16\ Command line parameters: --cores 3 --error-rate 0.1 --times 1 --overlap 3 --minimum-length 1 -q 0,0 --quality-base 33 -o /var/folders/kh/zt2dzkrx2x7df59wctc6jhqr0000gn/T/q2-CasavaOneEightSingleLanePerSampleDirFmt-40l92u2s/P01-05D-M2-SHAM-Int-R2-F5R12_S36_L001_R1_001.fastq.gz -p /var/folders/kh/zt2dzkrx2x7df59wctc6jhqr0000gn/T/q2-CasavaOneEightSingleLanePerSampleDirFmt-40l92u2s/P01-05D-M2-SHAM-Int-R2-F5R12_S36_L001_R2_001.fastq.gz --front GTGCCAGCMGCCGCGGTAA -G GGACTACHVGGGTWTCTAAT /var/folders/kh/zt2dzkrx2x7df59wctc6jhqr0000gn/T/qiime2/abcdef/data/d6e36ee0-da28-4588-bc05-68643a35716c/data/P01-05D-M2-SHAM-Int-R2-F5R12_S36_L001_R1_001.fastq.gz /var/folders/kh/zt2dzkrx2x7df59wctc6jhqr0000gn/T/qiime2/abcdef/data/d6e36ee0-da28-4588-bc05-68643a35716c/data/P01-05D-M2-SHAM-Int-R2-F5R12_S36_L001_R2_001.fastq.gz\ Processing paired-end reads on 3 cores ...\ Done 00:00:01 49,326 reads @ 21.0 \'b5s/read; 2.86 M reads/minute\ Finished in 1.054 s (21.360 \'b5s/read; 2.81 M reads/minute).\ \ === Summary ===\ \ Total read pairs processed: 49,326\ Read 1 with adapter: 49,171 (99.7%)\ Read 2 with adapter: 48,834 (99.0%)\ \ == Read fate breakdown ==\ Pairs that were too short: 0 (0.0%)\ Pairs written (passing filters): 49,326 (100.0%)\ \ Total basepairs processed: 24,761,652 bp\ Read 1: 12,380,826 bp\ Read 2: 12,380,826 bp\ Quality-trimmed: 0 bp (0.0%)\ Read 1: 0 bp\ Read 2: 0 bp\ Total written (filtered): 22,704,735 bp (91.7%)\ Read 1: 11,447,133 bp\ Read 2: 11,257,602 bp\ \ === First read: Adapter 1 ===\ \ Sequence: GTGCCAGCMGCCGCGGTAA; Type: regular 5'; Length: 19; Trimmed: 49171 times\ \ Minimum overlap: 3\ No. of allowed errors:\ 1-9 bp: 0; 10-19 bp: 1\ \ Overview of removed sequences\ length count expect max.err error counts\ 14 2 0.0 1 1 1\ 16 2 0.0 1 1 1\ 17 31 0.0 1 16 15\ 18 564 0.0 1 53 511\ 19 48501 0.0 1 46580 1921\ 20 63 0.0 1 10 53\ 21 1 0.0 1 1\ 22 7 0.0 1 7\ \ \ === Second read: Adapter 2 ===\ \ Sequence: GGACTACHVGGGTWTCTAAT; Type: regular 5'; Length: 20; Trimmed: 48834 times\ \ Minimum overlap: 3\ No. of allowed errors:\ 1-9 bp: 0; 10-19 bp: 1; 20 bp: 2\ \ Overview of removed sequences\ length count expect max.err error counts\ 3 11 770.7 0 11\ 19 3 0.0 1 2 1\ 20 14 0.0 2 8 5 1\ 21 32 0.0 2 12 3 17\ 22 467 0.0 2 133 325 9\ 23 48199 0.0 2 46565 1387 247\ 24 89 0.0 2 27 60 2\ 61 5 0.0 2 0 2 3\ 63 7 0.0 2 0 3 4\ 64 6 0.0 2 0 1 5\ 65 1 0.0 2 0 0 1\ \ Command: cutadapt --cores 3 --error-rate 0.1 --times 1 --overlap 3 --minimum-length 1 -q 0,0 --quality-base 33 -o /var/folders/kh/zt2dzkrx2x7df59wctc6jhqr0000gn/T/q2-CasavaOneEightSingleLanePerSampleDirFmt-40l92u2s/P01-05E-M3-SHAM-Int-R1-F5R13_S37_L001_R1_001.fastq.gz -p /var/folders/kh/zt2dzkrx2x7df59wctc6jhqr0000gn/T/q2-CasavaOneEightSingleLanePerSampleDirFmt-40l92u2s/P01-05E-M3-SHAM-Int-R1-F5R13_S37_L001_R2_001.fastq.gz --front GTGCCAGCMGCCGCGGTAA -G GGACTACHVGGGTWTCTAAT /var/folders/kh/zt2dzkrx2x7df59wctc6jhqr0000gn/T/qiime2/abcdef/data/d6e36ee0-da28-4588-bc05-68643a35716c/data/P01-05E-M3-SHAM-Int-R1-F5R13_S37_L001_R1_001.fastq.gz /var/folders/kh/zt2dzkrx2x7df59wctc6jhqr0000gn/T/qiime2/abcdef/data/d6e36ee0-da28-4588-bc05-68643a35716c/data/P01-05E-M3-SHAM-Int-R1-F5R13_S37_L001_R2_001.fastq.gz\ \ This is cutadapt 4.2 with Python 3.8.16\ Command line parameters: --cores 3 --error-rate 0.1 --times 1 --overlap 3 --minimum-length 1 -q 0,0 --quality-base 33 -o /var/folders/kh/zt2dzkrx2x7df59wctc6jhqr0000gn/T/q2-CasavaOneEightSingleLanePerSampleDirFmt-40l92u2s/P01-05E-M3-SHAM-Int-R1-F5R13_S37_L001_R1_001.fastq.gz -p /var/folders/kh/zt2dzkrx2x7df59wctc6jhqr0000gn/T/q2-CasavaOneEightSingleLanePerSampleDirFmt-40l92u2s/P01-05E-M3-SHAM-Int-R1-F5R13_S37_L001_R2_001.fastq.gz --front GTGCCAGCMGCCGCGGTAA -G GGACTACHVGGGTWTCTAAT /var/folders/kh/zt2dzkrx2x7df59wctc6jhqr0000gn/T/qiime2/abcdef/data/d6e36ee0-da28-4588-bc05-68643a35716c/data/P01-05E-M3-SHAM-Int-R1-F5R13_S37_L001_R1_001.fastq.gz /var/folders/kh/zt2dzkrx2x7df59wctc6jhqr0000gn/T/qiime2/abcdef/data/d6e36ee0-da28-4588-bc05-68643a35716c/data/P01-05E-M3-SHAM-Int-R1-F5R13_S37_L001_R2_001.fastq.gz\ Processing paired-end reads on 3 cores ...\ [8<----------] 00:00:01 51,629 reads @ 20.4 \'b5s/read; 2.94 M reads/minuDone 00:00:01 51,629 reads @ 22.9 \'b5s/read; 2.62 M reads/minute\ Finished in 1.201 s (23.258 \'b5s/read; 2.58 M reads/minute).\ \ === Summary ===\ \ Total read pairs processed: 51,629\ Read 1 with adapter: 51,459 (99.7%)\ Read 2 with adapter: 51,156 (99.1%)\ \ == Read fate breakdown ==\ Pairs that were too short: 0 (0.0%)\ Pairs written (passing filters): 51,629 (100.0%)\ \ Total basepairs processed: 25,917,758 bp\ Read 1: 12,958,879 bp\ Read 2: 12,958,879 bp\ Quality-trimmed: 0 bp (0.0%)\ Read 1: 0 bp\ Read 2: 0 bp\ Total written (filtered): 23,917,338 bp (92.3%)\ Read 1: 11,981,679 bp\ Read 2: 11,935,659 bp\ \ === First read: Adapter 1 ===\ \ Sequence: GTGCCAGCMGCCGCGGTAA; Type: regular 5'; Length: 19; Trimmed: 51459 times\ \ Minimum overlap: 3\ No. of allowed errors:\ 1-9 bp: 0; 10-19 bp: 1\ \ Overview of removed sequences\ length count expect max.err error counts\ 13 1 0.0 1 1\ 14 3 0.0 1 1 2\ 15 1 0.0 1 1\ 16 3 0.0 1 2 1\ 17 25 0.0 1 16 9\ 18 577 0.0 1 54 523\ 19 50747 0.0 1 48697 2050\ 20 81 0.0 1 12 69\ 21 4 0.0 1 3 1\ 22 17 0.0 1 17\ \ \ === Second read: Adapter 2 ===\ \ Sequence: GGACTACHVGGGTWTCTAAT; Type: regular 5'; Length: 20; Trimmed: 51156 times\ \ Minimum overlap: 3\ No. of allowed errors:\ 1-9 bp: 0; 10-19 bp: 1; 20 bp: 2\ \ Overview of removed sequences\ length count expect max.err error counts\ 14 1 0.0 1 1\ 16 2 0.0 1 1 1\ 18 39 0.0 1 3 5 31\ 19 479 0.0 1 64 407 8\ 20 50454 0.0 2 48903 1363 188\ 21 105 0.0 2 21 80 4\ 22 35 0.0 2 32 1 2\ 23 31 0.0 2 19 5 7\ 58 1 0.0 2 0 1\ 60 5 0.0 2 0 0 5\ 61 3 0.0 2 0 1 2\ 62 1 0.0 2 0 1\ \ Command: cutadapt --cores 3 --error-rate 0.1 --times 1 --overlap 3 --minimum-length 1 -q 0,0 --quality-base 33 -o /var/folders/kh/zt2dzkrx2x7df59wctc6jhqr0000gn/T/q2-CasavaOneEightSingleLanePerSampleDirFmt-40l92u2s/P01-05F-M3-SHAM-Int-R2-F5R14_S38_L001_R1_001.fastq.gz -p /var/folders/kh/zt2dzkrx2x7df59wctc6jhqr0000gn/T/q2-CasavaOneEightSingleLanePerSampleDirFmt-40l92u2s/P01-05F-M3-SHAM-Int-R2-F5R14_S38_L001_R2_001.fastq.gz --front GTGCCAGCMGCCGCGGTAA -G GGACTACHVGGGTWTCTAAT /var/folders/kh/zt2dzkrx2x7df59wctc6jhqr0000gn/T/qiime2/abcdef/data/d6e36ee0-da28-4588-bc05-68643a35716c/data/P01-05F-M3-SHAM-Int-R2-F5R14_S38_L001_R1_001.fastq.gz /var/folders/kh/zt2dzkrx2x7df59wctc6jhqr0000gn/T/qiime2/abcdef/data/d6e36ee0-da28-4588-bc05-68643a35716c/data/P01-05F-M3-SHAM-Int-R2-F5R14_S38_L001_R2_001.fastq.gz\ \ This is cutadapt 4.2 with Python 3.8.16\ Command line parameters: --cores 3 --error-rate 0.1 --times 1 --overlap 3 --minimum-length 1 -q 0,0 --quality-base 33 -o /var/folders/kh/zt2dzkrx2x7df59wctc6jhqr0000gn/T/q2-CasavaOneEightSingleLanePerSampleDirFmt-40l92u2s/P01-05F-M3-SHAM-Int-R2-F5R14_S38_L001_R1_001.fastq.gz -p /var/folders/kh/zt2dzkrx2x7df59wctc6jhqr0000gn/T/q2-CasavaOneEightSingleLanePerSampleDirFmt-40l92u2s/P01-05F-M3-SHAM-Int-R2-F5R14_S38_L001_R2_001.fastq.gz --front GTGCCAGCMGCCGCGGTAA -G GGACTACHVGGGTWTCTAAT /var/folders/kh/zt2dzkrx2x7df59wctc6jhqr0000gn/T/qiime2/abcdef/data/d6e36ee0-da28-4588-bc05-68643a35716c/data/P01-05F-M3-SHAM-Int-R2-F5R14_S38_L001_R1_001.fastq.gz /var/folders/kh/zt2dzkrx2x7df59wctc6jhqr0000gn/T/qiime2/abcdef/data/d6e36ee0-da28-4588-bc05-68643a35716c/data/P01-05F-M3-SHAM-Int-R2-F5R14_S38_L001_R2_001.fastq.gz\ Processing paired-end reads on 3 cores ...\ Done 00:00:00 41,358 reads @ 22.4 \'b5s/read; 2.68 M reads/minute\ Finished in 0.940 s (22.740 \'b5s/read; 2.64 M reads/minute).\ \ === Summary ===\ \ Total read pairs processed: 41,358\ Read 1 with adapter: 41,246 (99.7%)\ Read 2 with adapter: 40,867 (98.8%)\ \ == Read fate breakdown ==\ Pairs that were too short: 0 (0.0%)\ Pairs written (passing filters): 41,358 (100.0%)\ \ Total basepairs processed: 20,761,716 bp\ Read 1: 10,380,858 bp\ Read 2: 10,380,858 bp\ Quality-trimmed: 0 bp (0.0%)\ Read 1: 0 bp\ Read 2: 0 bp\ Total written (filtered): 19,120,164 bp (92.1%)\ Read 1: 9,597,583 bp\ Read 2: 9,522,581 bp\ \ === First read: Adapter 1 ===\ \ Sequence: GTGCCAGCMGCCGCGGTAA; Type: regular 5'; Length: 19; Trimmed: 41246 times\ \ Minimum overlap: 3\ No. of allowed errors:\ 1-9 bp: 0; 10-19 bp: 1\ \ Overview of removed sequences\ length count expect max.err error counts\ 14 2 0.0 1 2\ 15 1 0.0 1 1\ 16 2 0.0 1 1 1\ 17 20 0.0 1 10 10\ 18 442 0.0 1 48 394\ 19 40709 0.0 1 39016 1693\ 20 52 0.0 1 4 48\ 21 3 0.0 1 3\ 22 15 0.0 1 15\ \ \ === Second read: Adapter 2 ===\ \ Sequence: GGACTACHVGGGTWTCTAAT; Type: regular 5'; Length: 20; Trimmed: 40867 times\ \ Minimum overlap: 3\ No. of allowed errors:\ 1-9 bp: 0; 10-19 bp: 1; 20 bp: 2\ \ Overview of removed sequences\ length count expect max.err error counts\ 4 4 161.6 0 4\ 18 2 0.0 1 1 1\ 19 24 0.0 1 3 3 18\ 20 342 0.0 2 44 284 14\ 21 40312 0.0 2 38973 1131 208\ 22 127 0.0 2 50 71 6\ 23 47 0.0 2 37 5 5\ 24 1 0.0 2 1\ 54 1 0.0 2 0 0 1\ 58 1 0.0 2 0 1\ 59 1 0.0 2 0 0 1\ 60 2 0.0 2 0 1 1\ 62 2 0.0 2 0 1 1\ 63 1 0.0 2 0 0 1\ \ Command: cutadapt --cores 3 --error-rate 0.1 --times 1 --overlap 3 --minimum-length 1 -q 0,0 --quality-base 33 -o /var/folders/kh/zt2dzkrx2x7df59wctc6jhqr0000gn/T/q2-CasavaOneEightSingleLanePerSampleDirFmt-40l92u2s/P01-05G-M4-SHAM-Int-R1-F5R15_S39_L001_R1_001.fastq.gz -p /var/folders/kh/zt2dzkrx2x7df59wctc6jhqr0000gn/T/q2-CasavaOneEightSingleLanePerSampleDirFmt-40l92u2s/P01-05G-M4-SHAM-Int-R1-F5R15_S39_L001_R2_001.fastq.gz --front GTGCCAGCMGCCGCGGTAA -G GGACTACHVGGGTWTCTAAT /var/folders/kh/zt2dzkrx2x7df59wctc6jhqr0000gn/T/qiime2/abcdef/data/d6e36ee0-da28-4588-bc05-68643a35716c/data/P01-05G-M4-SHAM-Int-R1-F5R15_S39_L001_R1_001.fastq.gz /var/folders/kh/zt2dzkrx2x7df59wctc6jhqr0000gn/T/qiime2/abcdef/data/d6e36ee0-da28-4588-bc05-68643a35716c/data/P01-05G-M4-SHAM-Int-R1-F5R15_S39_L001_R2_001.fastq.gz\ \ This is cutadapt 4.2 with Python 3.8.16\ Command line parameters: --cores 3 --error-rate 0.1 --times 1 --overlap 3 --minimum-length 1 -q 0,0 --quality-base 33 -o /var/folders/kh/zt2dzkrx2x7df59wctc6jhqr0000gn/T/q2-CasavaOneEightSingleLanePerSampleDirFmt-40l92u2s/P01-05G-M4-SHAM-Int-R1-F5R15_S39_L001_R1_001.fastq.gz -p /var/folders/kh/zt2dzkrx2x7df59wctc6jhqr0000gn/T/q2-CasavaOneEightSingleLanePerSampleDirFmt-40l92u2s/P01-05G-M4-SHAM-Int-R1-F5R15_S39_L001_R2_001.fastq.gz --front GTGCCAGCMGCCGCGGTAA -G GGACTACHVGGGTWTCTAAT /var/folders/kh/zt2dzkrx2x7df59wctc6jhqr0000gn/T/qiime2/abcdef/data/d6e36ee0-da28-4588-bc05-68643a35716c/data/P01-05G-M4-SHAM-Int-R1-F5R15_S39_L001_R1_001.fastq.gz /var/folders/kh/zt2dzkrx2x7df59wctc6jhqr0000gn/T/qiime2/abcdef/data/d6e36ee0-da28-4588-bc05-68643a35716c/data/P01-05G-M4-SHAM-Int-R1-F5R15_S39_L001_R2_001.fastq.gz\ Processing paired-end reads on 3 cores ...\ [8<----------] 00:00:01 64,110 reads @ 16.5 \'b5s/read; 3.63 M reads/minu[8=----------] 00:00:02 142,465 reads @ 13.8 \'b5s/read; 4.36 M reads/minu[ 8<---------] 00:00:03 213,698 reads @ 14.3 \'b5s/read; 4.19 M reads/minu[ 8=---------] 00:00:04 284,924 reads @ 14.1 \'b5s/read; 4.26 M reads/minuDone 00:00:04 306,496 reads @ 14.9 \'b5s/read; 4.04 M reads/minute\ Finished in 4.578 s (14.937 \'b5s/read; 4.02 M reads/minute).\ \ === Summary ===\ \ Total read pairs processed: 306,496\ Read 1 with adapter: 305,594 (99.7%)\ Read 2 with adapter: 304,162 (99.2%)\ \ == Read fate breakdown ==\ Pairs that were too short: 0 (0.0%)\ Pairs written (passing filters): 306,496 (100.0%)\ \ Total basepairs processed: 153,860,992 bp\ Read 1: 76,930,496 bp\ Read 2: 76,930,496 bp\ Quality-trimmed: 0 bp (0.0%)\ Read 1: 0 bp\ Read 2: 0 bp\ Total written (filtered): 141,364,851 bp (91.9%)\ Read 1: 71,127,582 bp\ Read 2: 70,237,269 bp\ \ === First read: Adapter 1 ===\ \ Sequence: GTGCCAGCMGCCGCGGTAA; Type: regular 5'; Length: 19; Trimmed: 305594 times\ \ Minimum overlap: 3\ No. of allowed errors:\ 1-9 bp: 0; 10-19 bp: 1\ \ Overview of removed sequences\ length count expect max.err error counts\ 4 1 1197.2 0 1\ 11 1 0.1 1 0 1\ 12 2 0.0 1 2\ 14 3 0.0 1 0 3\ 15 14 0.0 1 11 3\ 16 10 0.0 1 6 4\ 17 126 0.0 1 78 48\ 18 3417 0.0 1 315 3102\ 19 301621 0.0 1 289319 12302\ 20 377 0.0 1 62 315\ 21 8 0.0 1 8\ 22 14 0.0 1 12 2\ \ \ === Second read: Adapter 2 ===\ \ Sequence: GGACTACHVGGGTWTCTAAT; Type: regular 5'; Length: 20; Trimmed: 304162 times\ \ Minimum overlap: 3\ No. of allowed errors:\ 1-9 bp: 0; 10-19 bp: 1; 20 bp: 2\ \ Overview of removed sequences\ length count expect max.err error counts\ 3 42 4789.0 0 42\ 4 1 1197.2 0 1\ 5 1 299.3 0 1\ 9 1 1.2 0 0 1\ 12 1 0.0 1 1\ 13 1 0.0 1 1\ 14 2 0.0 1 0 2\ 15 5 0.0 1 4 1\ 16 2 0.0 1 1 1\ 17 4 0.0 1 1 3\ 18 4 0.0 1 1 3\ 19 15 0.0 1 4 10 1\ 20 259 0.0 2 51 27 181\ 21 2397 0.0 2 415 1919 63\ 22 300536 0.0 2 292083 7324 1129\ 23 763 0.0 2 198 513 52\ 24 2 0.0 2 0 1 1\ 25 3 0.0 2 2 0 1\ 26 1 0.0 2 1\ 28 1 0.0 2 1\ 30 1 0.0 2 0 1\ 49 1 0.0 2 0 1\ 52 1 0.0 2 0 1\ 57 1 0.0 2 0 0 1\ 58 4 0.0 2 1 2 1\ 59 5 0.0 2 1 4\ 60 11 0.0 2 2 6 3\ 61 12 0.0 2 3 6 3\ 62 16 0.0 2 2 9 5\ 63 52 0.0 2 9 15 28\ 64 17 0.0 2 0 4 13\ \ Command: cutadapt --cores 3 --error-rate 0.1 --times 1 --overlap 3 --minimum-length 1 -q 0,0 --quality-base 33 -o /var/folders/kh/zt2dzkrx2x7df59wctc6jhqr0000gn/T/q2-CasavaOneEightSingleLanePerSampleDirFmt-40l92u2s/P01-05H-M4-SHAM-Int-R2-F5R16_S40_L001_R1_001.fastq.gz -p /var/folders/kh/zt2dzkrx2x7df59wctc6jhqr0000gn/T/q2-CasavaOneEightSingleLanePerSampleDirFmt-40l92u2s/P01-05H-M4-SHAM-Int-R2-F5R16_S40_L001_R2_001.fastq.gz --front GTGCCAGCMGCCGCGGTAA -G GGACTACHVGGGTWTCTAAT /var/folders/kh/zt2dzkrx2x7df59wctc6jhqr0000gn/T/qiime2/abcdef/data/d6e36ee0-da28-4588-bc05-68643a35716c/data/P01-05H-M4-SHAM-Int-R2-F5R16_S40_L001_R1_001.fastq.gz /var/folders/kh/zt2dzkrx2x7df59wctc6jhqr0000gn/T/qiime2/abcdef/data/d6e36ee0-da28-4588-bc05-68643a35716c/data/P01-05H-M4-SHAM-Int-R2-F5R16_S40_L001_R2_001.fastq.gz\ \ This is cutadapt 4.2 with Python 3.8.16\ Command line parameters: --cores 3 --error-rate 0.1 --times 1 --overlap 3 --minimum-length 1 -q 0,0 --quality-base 33 -o /var/folders/kh/zt2dzkrx2x7df59wctc6jhqr0000gn/T/q2-CasavaOneEightSingleLanePerSampleDirFmt-40l92u2s/P01-05H-M4-SHAM-Int-R2-F5R16_S40_L001_R1_001.fastq.gz -p /var/folders/kh/zt2dzkrx2x7df59wctc6jhqr0000gn/T/q2-CasavaOneEightSingleLanePerSampleDirFmt-40l92u2s/P01-05H-M4-SHAM-Int-R2-F5R16_S40_L001_R2_001.fastq.gz --front GTGCCAGCMGCCGCGGTAA -G GGACTACHVGGGTWTCTAAT /var/folders/kh/zt2dzkrx2x7df59wctc6jhqr0000gn/T/qiime2/abcdef/data/d6e36ee0-da28-4588-bc05-68643a35716c/data/P01-05H-M4-SHAM-Int-R2-F5R16_S40_L001_R1_001.fastq.gz /var/folders/kh/zt2dzkrx2x7df59wctc6jhqr0000gn/T/qiime2/abcdef/data/d6e36ee0-da28-4588-bc05-68643a35716c/data/P01-05H-M4-SHAM-Int-R2-F5R16_S40_L001_R2_001.fastq.gz\ Processing paired-end reads on 3 cores ...\ [8<----------] 00:00:01 64,112 reads @ 16.1 \'b5s/read; 3.73 M reads/minu[8=----------] 00:00:02 128,223 reads @ 16.4 \'b5s/read; 3.66 M reads/minu[ 8<---------] 00:00:03 206,576 reads @ 13.4 \'b5s/read; 4.47 M reads/minu[ 8=---------] 00:00:04 277,807 reads @ 14.5 \'b5s/read; 4.13 M reads/minu[ 8<--------] 00:00:05 356,158 reads @ 13.3 \'b5s/read; 4.52 M reads/minuDone 00:00:05 379,825 reads @ 14.8 \'b5s/read; 4.06 M reads/minute\ Finished in 5.634 s (14.832 \'b5s/read; 4.05 M reads/minute).\ \ === Summary ===\ \ Total read pairs processed: 379,825\ Read 1 with adapter: 378,692 (99.7%)\ Read 2 with adapter: 376,871 (99.2%)\ \ == Read fate breakdown ==\ Pairs that were too short: 0 (0.0%)\ Pairs written (passing filters): 379,825 (100.0%)\ \ Total basepairs processed: 190,672,150 bp\ Read 1: 95,336,075 bp\ Read 2: 95,336,075 bp\ Quality-trimmed: 0 bp (0.0%)\ Read 1: 0 bp\ Read 2: 0 bp\ Total written (filtered): 174,816,844 bp (91.7%)\ Read 1: 88,144,989 bp\ Read 2: 86,671,855 bp\ \ === First read: Adapter 1 ===\ \ Sequence: GTGCCAGCMGCCGCGGTAA; Type: regular 5'; Length: 19; Trimmed: 378692 times\ \ Minimum overlap: 3\ No. of allowed errors:\ 1-9 bp: 0; 10-19 bp: 1\ \ Overview of removed sequences\ length count expect max.err error counts\ 10 1 0.4 1 1\ 12 2 0.0 1 1 1\ 13 3 0.0 1 3\ 14 6 0.0 1 1 5\ 15 8 0.0 1 7 1\ 16 26 0.0 1 12 14\ 17 163 0.0 1 104 59\ 18 4136 0.0 1 352 3784\ 19 373825 0.0 1 358582 15243\ 20 487 0.0 1 58 429\ 21 11 0.0 1 9 2\ 22 24 0.0 1 22 2\ \ \ === Second read: Adapter 2 ===\ \ Sequence: GGACTACHVGGGTWTCTAAT; Type: regular 5'; Length: 20; Trimmed: 376871 times\ \ Minimum overlap: 3\ No. of allowed errors:\ 1-9 bp: 0; 10-19 bp: 1; 20 bp: 2\ \ Overview of removed sequences\ length count expect max.err error counts\ 3 49 5934.8 0 49\ 4 23 1483.7 0 23\ 13 1 0.0 1 1\ 14 1 0.0 1 0 1\ 15 3 0.0 1 2 1\ 17 4 0.0 1 2 2\ 18 5 0.0 1 2 3\ 19 6 0.0 1 5 1\ 20 52 0.0 2 23 11 18\ 21 284 0.0 2 47 38 199\ 22 3300 0.0 2 692 2499 109\ 23 372259 0.0 2 362229 8697 1333\ 24 852 0.0 2 257 585 10\ 25 6 0.0 2 1 1 4\ 26 1 0.0 2 1\ 27 1 0.0 2 1\ 28 2 0.0 2 0 0 2\ 51 1 0.0 2 0 0 1\ 60 2 0.0 2 0 1 1\ 61 2 0.0 2 0 2\ 62 5 0.0 2 0 1 4\ 63 4 0.0 2 0 0 4\ 64 6 0.0 2 0 2 4\ 65 2 0.0 2 0 0 2\ \ Command: cutadapt --cores 3 --error-rate 0.1 --times 1 --overlap 3 --minimum-length 1 -q 0,0 --quality-base 33 -o /var/folders/kh/zt2dzkrx2x7df59wctc6jhqr0000gn/T/q2-CasavaOneEightSingleLanePerSampleDirFmt-40l92u2s/P01-06A-M5-MI-Int-R1-F6R9_S41_L001_R1_001.fastq.gz -p /var/folders/kh/zt2dzkrx2x7df59wctc6jhqr0000gn/T/q2-CasavaOneEightSingleLanePerSampleDirFmt-40l92u2s/P01-06A-M5-MI-Int-R1-F6R9_S41_L001_R2_001.fastq.gz --front GTGCCAGCMGCCGCGGTAA -G GGACTACHVGGGTWTCTAAT /var/folders/kh/zt2dzkrx2x7df59wctc6jhqr0000gn/T/qiime2/abcdef/data/d6e36ee0-da28-4588-bc05-68643a35716c/data/P01-06A-M5-MI-Int-R1-F6R9_S41_L001_R1_001.fastq.gz /var/folders/kh/zt2dzkrx2x7df59wctc6jhqr0000gn/T/qiime2/abcdef/data/d6e36ee0-da28-4588-bc05-68643a35716c/data/P01-06A-M5-MI-Int-R1-F6R9_S41_L001_R2_001.fastq.gz\ \ This is cutadapt 4.2 with Python 3.8.16\ Command line parameters: --cores 3 --error-rate 0.1 --times 1 --overlap 3 --minimum-length 1 -q 0,0 --quality-base 33 -o /var/folders/kh/zt2dzkrx2x7df59wctc6jhqr0000gn/T/q2-CasavaOneEightSingleLanePerSampleDirFmt-40l92u2s/P01-06A-M5-MI-Int-R1-F6R9_S41_L001_R1_001.fastq.gz -p /var/folders/kh/zt2dzkrx2x7df59wctc6jhqr0000gn/T/q2-CasavaOneEightSingleLanePerSampleDirFmt-40l92u2s/P01-06A-M5-MI-Int-R1-F6R9_S41_L001_R2_001.fastq.gz --front GTGCCAGCMGCCGCGGTAA -G GGACTACHVGGGTWTCTAAT /var/folders/kh/zt2dzkrx2x7df59wctc6jhqr0000gn/T/qiime2/abcdef/data/d6e36ee0-da28-4588-bc05-68643a35716c/data/P01-06A-M5-MI-Int-R1-F6R9_S41_L001_R1_001.fastq.gz /var/folders/kh/zt2dzkrx2x7df59wctc6jhqr0000gn/T/qiime2/abcdef/data/d6e36ee0-da28-4588-bc05-68643a35716c/data/P01-06A-M5-MI-Int-R1-F6R9_S41_L001_R2_001.fastq.gz\ Processing paired-end reads on 3 cores ...\ Done 00:00:00 111 reads @ 1991.9 \'b5s/read; 0.03 M reads/minute\ Finished in 0.229 s (2058.648 \'b5s/read; 0.03 M reads/minute).\ \ === Summary ===\ \ Total read pairs processed: 111\ Read 1 with adapter: 111 (100.0%)\ Read 2 with adapter: 100 (90.1%)\ \ == Read fate breakdown ==\ Pairs that were too short: 0 (0.0%)\ Pairs written (passing filters): 111 (100.0%)\ \ Total basepairs processed: 55,722 bp\ Read 1: 27,861 bp\ Read 2: 27,861 bp\ Quality-trimmed: 0 bp (0.0%)\ Read 1: 0 bp\ Read 2: 0 bp\ Total written (filtered): 51,459 bp (92.3%)\ Read 1: 25,631 bp\ Read 2: 25,828 bp\ \ === First read: Adapter 1 ===\ \ Sequence: GTGCCAGCMGCCGCGGTAA; Type: regular 5'; Length: 19; Trimmed: 111 times\ \ Minimum overlap: 3\ No. of allowed errors:\ 1-9 bp: 0; 10-19 bp: 1\ \ Overview of removed sequences\ length count expect max.err error counts\ 19 1 0.0 1 1\ 20 102 0.0 1 97 5\ 21 5 0.0 1 4 1\ 22 3 0.0 1 2 1\ \ \ === Second read: Adapter 2 ===\ \ Sequence: GGACTACHVGGGTWTCTAAT; Type: regular 5'; Length: 20; Trimmed: 100 times\ \ Minimum overlap: 3\ No. of allowed errors:\ 1-9 bp: 0; 10-19 bp: 1; 20 bp: 2\ \ Overview of removed sequences\ length count expect max.err error counts\ 19 1 0.0 1 0 1\ 20 81 0.0 2 77 3 1\ 21 10 0.0 2 8 1 1\ 23 8 0.0 2 8\ \ Command: cutadapt --cores 3 --error-rate 0.1 --times 1 --overlap 3 --minimum-length 1 -q 0,0 --quality-base 33 -o /var/folders/kh/zt2dzkrx2x7df59wctc6jhqr0000gn/T/q2-CasavaOneEightSingleLanePerSampleDirFmt-40l92u2s/P01-06B-M5-MI-Int-R2-F6R10_S42_L001_R1_001.fastq.gz -p /var/folders/kh/zt2dzkrx2x7df59wctc6jhqr0000gn/T/q2-CasavaOneEightSingleLanePerSampleDirFmt-40l92u2s/P01-06B-M5-MI-Int-R2-F6R10_S42_L001_R2_001.fastq.gz --front GTGCCAGCMGCCGCGGTAA -G GGACTACHVGGGTWTCTAAT /var/folders/kh/zt2dzkrx2x7df59wctc6jhqr0000gn/T/qiime2/abcdef/data/d6e36ee0-da28-4588-bc05-68643a35716c/data/P01-06B-M5-MI-Int-R2-F6R10_S42_L001_R1_001.fastq.gz /var/folders/kh/zt2dzkrx2x7df59wctc6jhqr0000gn/T/qiime2/abcdef/data/d6e36ee0-da28-4588-bc05-68643a35716c/data/P01-06B-M5-MI-Int-R2-F6R10_S42_L001_R2_001.fastq.gz\ \ This is cutadapt 4.2 with Python 3.8.16\ Command line parameters: --cores 3 --error-rate 0.1 --times 1 --overlap 3 --minimum-length 1 -q 0,0 --quality-base 33 -o /var/folders/kh/zt2dzkrx2x7df59wctc6jhqr0000gn/T/q2-CasavaOneEightSingleLanePerSampleDirFmt-40l92u2s/P01-06B-M5-MI-Int-R2-F6R10_S42_L001_R1_001.fastq.gz -p /var/folders/kh/zt2dzkrx2x7df59wctc6jhqr0000gn/T/q2-CasavaOneEightSingleLanePerSampleDirFmt-40l92u2s/P01-06B-M5-MI-Int-R2-F6R10_S42_L001_R2_001.fastq.gz --front GTGCCAGCMGCCGCGGTAA -G GGACTACHVGGGTWTCTAAT /var/folders/kh/zt2dzkrx2x7df59wctc6jhqr0000gn/T/qiime2/abcdef/data/d6e36ee0-da28-4588-bc05-68643a35716c/data/P01-06B-M5-MI-Int-R2-F6R10_S42_L001_R1_001.fastq.gz /var/folders/kh/zt2dzkrx2x7df59wctc6jhqr0000gn/T/qiime2/abcdef/data/d6e36ee0-da28-4588-bc05-68643a35716c/data/P01-06B-M5-MI-Int-R2-F6R10_S42_L001_R2_001.fastq.gz\ Processing paired-end reads on 3 cores ...\ Done 00:00:00 306 reads @ 495.8 \'b5s/read; 0.12 M reads/minute\ Finished in 0.164 s (536.484 \'b5s/read; 0.11 M reads/minute).\ \ === Summary ===\ \ Total read pairs processed: 306\ Read 1 with adapter: 304 (99.3%)\ Read 2 with adapter: 263 (85.9%)\ \ == Read fate breakdown ==\ Pairs that were too short: 0 (0.0%)\ Pairs written (passing filters): 306 (100.0%)\ \ Total basepairs processed: 153,612 bp\ Read 1: 76,806 bp\ Read 2: 76,806 bp\ Quality-trimmed: 0 bp (0.0%)\ Read 1: 0 bp\ Read 2: 0 bp\ Total written (filtered): 141,940 bp (92.4%)\ Read 1: 70,682 bp\ Read 2: 71,258 bp\ \ === First read: Adapter 1 ===\ \ Sequence: GTGCCAGCMGCCGCGGTAA; Type: regular 5'; Length: 19; Trimmed: 304 times\ \ Minimum overlap: 3\ No. of allowed errors:\ 1-9 bp: 0; 10-19 bp: 1\ \ Overview of removed sequences\ length count expect max.err error counts\ 19 1 0.0 1 0 1\ 20 278 0.0 1 263 15\ 21 5 0.0 1 5\ 22 20 0.0 1 18 2\ \ \ === Second read: Adapter 2 ===\ \ Sequence: GGACTACHVGGGTWTCTAAT; Type: regular 5'; Length: 20; Trimmed: 263 times\ \ Minimum overlap: 3\ No. of allowed errors:\ 1-9 bp: 0; 10-19 bp: 1; 20 bp: 2\ \ Overview of removed sequences\ length count expect max.err error counts\ 3 1 4.8 0 1\ 19 1 0.0 1 0 0 1\ 20 40 0.0 2 34 4 2\ 21 176 0.0 2 162 10 4\ 22 5 0.0 2 4 1\ 23 40 0.0 2 35 3 2\ \ Command: cutadapt --cores 3 --error-rate 0.1 --times 1 --overlap 3 --minimum-length 1 -q 0,0 --quality-base 33 -o /var/folders/kh/zt2dzkrx2x7df59wctc6jhqr0000gn/T/q2-CasavaOneEightSingleLanePerSampleDirFmt-40l92u2s/P01-06C-M6-MI-Int-R1-F6R11_S43_L001_R1_001.fastq.gz -p /var/folders/kh/zt2dzkrx2x7df59wctc6jhqr0000gn/T/q2-CasavaOneEightSingleLanePerSampleDirFmt-40l92u2s/P01-06C-M6-MI-Int-R1-F6R11_S43_L001_R2_001.fastq.gz --front GTGCCAGCMGCCGCGGTAA -G GGACTACHVGGGTWTCTAAT /var/folders/kh/zt2dzkrx2x7df59wctc6jhqr0000gn/T/qiime2/abcdef/data/d6e36ee0-da28-4588-bc05-68643a35716c/data/P01-06C-M6-MI-Int-R1-F6R11_S43_L001_R1_001.fastq.gz /var/folders/kh/zt2dzkrx2x7df59wctc6jhqr0000gn/T/qiime2/abcdef/data/d6e36ee0-da28-4588-bc05-68643a35716c/data/P01-06C-M6-MI-Int-R1-F6R11_S43_L001_R2_001.fastq.gz\ \ This is cutadapt 4.2 with Python 3.8.16\ Command line parameters: --cores 3 --error-rate 0.1 --times 1 --overlap 3 --minimum-length 1 -q 0,0 --quality-base 33 -o /var/folders/kh/zt2dzkrx2x7df59wctc6jhqr0000gn/T/q2-CasavaOneEightSingleLanePerSampleDirFmt-40l92u2s/P01-06C-M6-MI-Int-R1-F6R11_S43_L001_R1_001.fastq.gz -p /var/folders/kh/zt2dzkrx2x7df59wctc6jhqr0000gn/T/q2-CasavaOneEightSingleLanePerSampleDirFmt-40l92u2s/P01-06C-M6-MI-Int-R1-F6R11_S43_L001_R2_001.fastq.gz --front GTGCCAGCMGCCGCGGTAA -G GGACTACHVGGGTWTCTAAT /var/folders/kh/zt2dzkrx2x7df59wctc6jhqr0000gn/T/qiime2/abcdef/data/d6e36ee0-da28-4588-bc05-68643a35716c/data/P01-06C-M6-MI-Int-R1-F6R11_S43_L001_R1_001.fastq.gz /var/folders/kh/zt2dzkrx2x7df59wctc6jhqr0000gn/T/qiime2/abcdef/data/d6e36ee0-da28-4588-bc05-68643a35716c/data/P01-06C-M6-MI-Int-R1-F6R11_S43_L001_R2_001.fastq.gz\ Processing paired-end reads on 3 cores ...\ [8<----------] 00:00:01 56,988 reads @ 18.5 \'b5s/read; 3.24 M reads/minu[8=----------] 00:00:02 121,097 reads @ 15.7 \'b5s/read; 3.83 M reads/minuDone 00:00:02 168,288 reads @ 17.4 \'b5s/read; 3.46 M reads/minute\ Finished in 2.938 s (17.459 \'b5s/read; 3.44 M reads/minute).\ \ === Summary ===\ \ Total read pairs processed: 168,288\ Read 1 with adapter: 167,916 (99.8%)\ Read 2 with adapter: 166,222 (98.8%)\ \ == Read fate breakdown ==\ Pairs that were too short: 0 (0.0%)\ Pairs written (passing filters): 168,288 (100.0%)\ \ Total basepairs processed: 84,480,576 bp\ Read 1: 42,240,288 bp\ Read 2: 42,240,288 bp\ Quality-trimmed: 0 bp (0.0%)\ Read 1: 0 bp\ Read 2: 0 bp\ Total written (filtered): 77,467,778 bp (91.7%)\ Read 1: 38,883,406 bp\ Read 2: 38,584,372 bp\ \ === First read: Adapter 1 ===\ \ Sequence: GTGCCAGCMGCCGCGGTAA; Type: regular 5'; Length: 19; Trimmed: 167916 times\ \ Minimum overlap: 3\ No. of allowed errors:\ 1-9 bp: 0; 10-19 bp: 1\ \ Overview of removed sequences\ length count expect max.err error counts\ 14 1 0.0 1 0 1\ 15 2 0.0 1 1 1\ 16 2 0.0 1 2\ 17 13 0.0 1 6 7\ 18 23 0.0 1 14 9\ 19 1631 0.0 1 132 1499\ 20 165969 0.0 1 160434 5535\ 21 248 0.0 1 104 144\ 22 27 0.0 1 26 1\ \ \ === Second read: Adapter 2 ===\ \ Sequence: GGACTACHVGGGTWTCTAAT; Type: regular 5'; Length: 20; Trimmed: 166222 times\ \ Minimum overlap: 3\ No. of allowed errors:\ 1-9 bp: 0; 10-19 bp: 1; 20 bp: 2\ \ Overview of removed sequences\ length count expect max.err error counts\ 3 4 2629.5 0 4\ 4 3 657.4 0 3\ 17 1 0.0 1 1\ 18 2 0.0 1 2\ 19 4 0.0 1 0 4\ 20 190 0.0 2 115 28 47\ 21 1533 0.0 2 209 1276 48\ 22 163858 0.0 2 157206 5446 1206\ 23 615 0.0 2 224 363 28\ 60 1 0.0 2 0 1\ 61 3 0.0 2 1 1 1\ 62 2 0.0 2 0 1 1\ 63 4 0.0 2 0 3 1\ 65 2 0.0 2 0 0 2\ \ Command: cutadapt --cores 3 --error-rate 0.1 --times 1 --overlap 3 --minimum-length 1 -q 0,0 --quality-base 33 -o /var/folders/kh/zt2dzkrx2x7df59wctc6jhqr0000gn/T/q2-CasavaOneEightSingleLanePerSampleDirFmt-40l92u2s/P01-06D-M6-MI-Int-R2-F6R12_S44_L001_R1_001.fastq.gz -p /var/folders/kh/zt2dzkrx2x7df59wctc6jhqr0000gn/T/q2-CasavaOneEightSingleLanePerSampleDirFmt-40l92u2s/P01-06D-M6-MI-Int-R2-F6R12_S44_L001_R2_001.fastq.gz --front GTGCCAGCMGCCGCGGTAA -G GGACTACHVGGGTWTCTAAT /var/folders/kh/zt2dzkrx2x7df59wctc6jhqr0000gn/T/qiime2/abcdef/data/d6e36ee0-da28-4588-bc05-68643a35716c/data/P01-06D-M6-MI-Int-R2-F6R12_S44_L001_R1_001.fastq.gz /var/folders/kh/zt2dzkrx2x7df59wctc6jhqr0000gn/T/qiime2/abcdef/data/d6e36ee0-da28-4588-bc05-68643a35716c/data/P01-06D-M6-MI-Int-R2-F6R12_S44_L001_R2_001.fastq.gz\ \ This is cutadapt 4.2 with Python 3.8.16\ Command line parameters: --cores 3 --error-rate 0.1 --times 1 --overlap 3 --minimum-length 1 -q 0,0 --quality-base 33 -o /var/folders/kh/zt2dzkrx2x7df59wctc6jhqr0000gn/T/q2-CasavaOneEightSingleLanePerSampleDirFmt-40l92u2s/P01-06D-M6-MI-Int-R2-F6R12_S44_L001_R1_001.fastq.gz -p /var/folders/kh/zt2dzkrx2x7df59wctc6jhqr0000gn/T/q2-CasavaOneEightSingleLanePerSampleDirFmt-40l92u2s/P01-06D-M6-MI-Int-R2-F6R12_S44_L001_R2_001.fastq.gz --front GTGCCAGCMGCCGCGGTAA -G GGACTACHVGGGTWTCTAAT /var/folders/kh/zt2dzkrx2x7df59wctc6jhqr0000gn/T/qiime2/abcdef/data/d6e36ee0-da28-4588-bc05-68643a35716c/data/P01-06D-M6-MI-Int-R2-F6R12_S44_L001_R1_001.fastq.gz /var/folders/kh/zt2dzkrx2x7df59wctc6jhqr0000gn/T/qiime2/abcdef/data/d6e36ee0-da28-4588-bc05-68643a35716c/data/P01-06D-M6-MI-Int-R2-F6R12_S44_L001_R2_001.fastq.gz\ Processing paired-end reads on 3 cores ...\ [8<----------] 00:00:01 56,993 reads @ 19.2 \'b5s/read; 3.12 M reads/minu[8=----------] 00:00:02 121,102 reads @ 16.3 \'b5s/read; 3.68 M reads/minu[ 8<---------] 00:00:03 192,332 reads @ 16.7 \'b5s/read; 3.59 M reads/minu[ 8=---------] 00:00:04 263,570 reads @ 16.8 \'b5s/read; 3.58 M reads/minu[ 8<--------] 00:00:05 334,796 reads @ 16.0 \'b5s/read; 3.74 M reads/minu[ 8=--------] 00:00:06 406,029 reads @ 17.0 \'b5s/read; 3.53 M reads/minu[ 8<-------] 00:00:08 477,262 reads @ 15.9 \'b5s/read; 3.77 M reads/minu[ 8=-------] 00:00:09 548,489 reads @ 16.7 \'b5s/read; 3.60 M reads/minu[ 8<------] 00:00:10 619,727 reads @ 16.3 \'b5s/read; 3.67 M reads/minu[ 8=------] 00:00:11 690,943 reads @ 16.0 \'b5s/read; 3.76 M reads/minu[ 8<-----] 00:00:12 762,183 reads @ 16.5 \'b5s/read; 3.64 M reads/minu[ 8=-----] 00:00:13 833,410 reads @ 16.8 \'b5s/read; 3.57 M reads/minu[ 8<----] 00:00:15 902,355 reads @ 16.6 \'b5s/read; 3.61 M reads/minuDone 00:00:15 902,355 reads @ 16.7 \'b5s/read; 3.59 M reads/minute\ Finished in 15.107 s (16.741 \'b5s/read; 3.58 M reads/minute).\ \ === Summary ===\ \ Total read pairs processed: 902,355\ Read 1 with adapter: 900,512 (99.8%)\ Read 2 with adapter: 889,564 (98.6%)\ \ == Read fate breakdown ==\ Pairs that were too short: 0 (0.0%)\ Pairs written (passing filters): 902,355 (100.0%)\ \ Total basepairs processed: 452,982,210 bp\ Read 1: 226,491,105 bp\ Read 2: 226,491,105 bp\ Quality-trimmed: 0 bp (0.0%)\ Read 1: 0 bp\ Read 2: 0 bp\ Total written (filtered): 414,526,044 bp (91.5%)\ Read 1: 208,488,707 bp\ Read 2: 206,037,337 bp\ \ === First read: Adapter 1 ===\ \ Sequence: GTGCCAGCMGCCGCGGTAA; Type: regular 5'; Length: 19; Trimmed: 900512 times\ \ Minimum overlap: 3\ No. of allowed errors:\ 1-9 bp: 0; 10-19 bp: 1\ \ Overview of removed sequences\ length count expect max.err error counts\ 12 1 0.1 1 1\ 13 3 0.0 1 2 1\ 14 11 0.0 1 5 6\ 15 8 0.0 1 5 3\ 16 11 0.0 1 5 6\ 17 45 0.0 1 25 20\ 18 144 0.0 1 54 90\ 19 8496 0.0 1 644 7852\ 20 890606 0.0 1 861799 28807\ 21 1132 0.0 1 331 801\ 22 54 0.0 1 49 5\ 36 1 0.0 1 1\ \ \ === Second read: Adapter 2 ===\ \ Sequence: GGACTACHVGGGTWTCTAAT; Type: regular 5'; Length: 20; Trimmed: 889564 times\ \ Minimum overlap: 3\ No. of allowed errors:\ 1-9 bp: 0; 10-19 bp: 1; 20 bp: 2\ \ Overview of removed sequences\ length count expect max.err error counts\ 3 205 14099.3 0 205\ 4 28 3524.8 0 28\ 6 1 220.3 0 1\ 15 8 0.0 1 2 6\ 16 1 0.0 1 0 1\ 17 5 0.0 1 3 2\ 18 5 0.0 1 1 4\ 19 24 0.0 1 7 15 2\ 20 284 0.0 2 167 61 56\ 21 940 0.0 2 309 155 476\ 22 7568 0.0 2 1896 5346 326\ 23 878389 0.0 2 839946 31554 6889\ 24 1923 0.0 2 621 1245 57\ 25 6 0.0 2 0 3 3\ 26 1 0.0 2 0 0 1\ 51 1 0.0 2 0 1\ 57 1 0.0 2 0 1\ 58 3 0.0 2 0 1 2\ 59 4 0.0 2 0 2 2\ 60 6 0.0 2 1 2 3\ 61 7 0.0 2 1 3 3\ 62 26 0.0 2 2 9 15\ 63 45 0.0 2 6 17 22\ 64 72 0.0 2 5 17 50\ 65 9 0.0 2 0 1 8\ 66 2 0.0 2 0 1 1\ \ Command: cutadapt --cores 3 --error-rate 0.1 --times 1 --overlap 3 --minimum-length 1 -q 0,0 --quality-base 33 -o /var/folders/kh/zt2dzkrx2x7df59wctc6jhqr0000gn/T/q2-CasavaOneEightSingleLanePerSampleDirFmt-40l92u2s/P01-06E-M7-MI-Int-R1-F6R13_S45_L001_R1_001.fastq.gz -p /var/folders/kh/zt2dzkrx2x7df59wctc6jhqr0000gn/T/q2-CasavaOneEightSingleLanePerSampleDirFmt-40l92u2s/P01-06E-M7-MI-Int-R1-F6R13_S45_L001_R2_001.fastq.gz --front GTGCCAGCMGCCGCGGTAA -G GGACTACHVGGGTWTCTAAT /var/folders/kh/zt2dzkrx2x7df59wctc6jhqr0000gn/T/qiime2/abcdef/data/d6e36ee0-da28-4588-bc05-68643a35716c/data/P01-06E-M7-MI-Int-R1-F6R13_S45_L001_R1_001.fastq.gz /var/folders/kh/zt2dzkrx2x7df59wctc6jhqr0000gn/T/qiime2/abcdef/data/d6e36ee0-da28-4588-bc05-68643a35716c/data/P01-06E-M7-MI-Int-R1-F6R13_S45_L001_R2_001.fastq.gz\ \ This is cutadapt 4.2 with Python 3.8.16\ Command line parameters: --cores 3 --error-rate 0.1 --times 1 --overlap 3 --minimum-length 1 -q 0,0 --quality-base 33 -o /var/folders/kh/zt2dzkrx2x7df59wctc6jhqr0000gn/T/q2-CasavaOneEightSingleLanePerSampleDirFmt-40l92u2s/P01-06E-M7-MI-Int-R1-F6R13_S45_L001_R1_001.fastq.gz -p /var/folders/kh/zt2dzkrx2x7df59wctc6jhqr0000gn/T/q2-CasavaOneEightSingleLanePerSampleDirFmt-40l92u2s/P01-06E-M7-MI-Int-R1-F6R13_S45_L001_R2_001.fastq.gz --front GTGCCAGCMGCCGCGGTAA -G GGACTACHVGGGTWTCTAAT /var/folders/kh/zt2dzkrx2x7df59wctc6jhqr0000gn/T/qiime2/abcdef/data/d6e36ee0-da28-4588-bc05-68643a35716c/data/P01-06E-M7-MI-Int-R1-F6R13_S45_L001_R1_001.fastq.gz /var/folders/kh/zt2dzkrx2x7df59wctc6jhqr0000gn/T/qiime2/abcdef/data/d6e36ee0-da28-4588-bc05-68643a35716c/data/P01-06E-M7-MI-Int-R1-F6R13_S45_L001_R2_001.fastq.gz\ Processing paired-end reads on 3 cores ...\ [8<----------] 00:00:01 56,995 reads @ 17.9 \'b5s/read; 3.34 M reads/minu[8=----------] 00:00:02 135,339 reads @ 14.3 \'b5s/read; 4.19 M reads/minu[ 8<---------] 00:00:03 206,579 reads @ 15.6 \'b5s/read; 3.84 M reads/minu[ 8=---------] 00:00:04 277,815 reads @ 15.2 \'b5s/read; 3.94 M reads/minu[ 8<--------] 00:00:05 349,046 reads @ 15.4 \'b5s/read; 3.89 M reads/minu[ 8=--------] 00:00:06 420,276 reads @ 15.8 \'b5s/read; 3.81 M reads/minu[ 8<-------] 00:00:07 491,506 reads @ 15.5 \'b5s/read; 3.88 M reads/minu[ 8=-------] 00:00:08 562,737 reads @ 15.6 \'b5s/read; 3.84 M reads/minu[ 8<------] 00:00:09 633,967 reads @ 15.8 \'b5s/read; 3.80 M reads/minuDone 00:00:10 689,052 reads @ 15.7 \'b5s/read; 3.82 M reads/minute\ Finished in 10.860 s (15.760 \'b5s/read; 3.81 M reads/minute).\ \ === Summary ===\ \ Total read pairs processed: 689,052\ Read 1 with adapter: 687,561 (99.8%)\ Read 2 with adapter: 683,323 (99.2%)\ \ == Read fate breakdown ==\ Pairs that were too short: 0 (0.0%)\ Pairs written (passing filters): 689,052 (100.0%)\ \ Total basepairs processed: 345,904,104 bp\ Read 1: 172,952,052 bp\ Read 2: 172,952,052 bp\ Quality-trimmed: 0 bp (0.0%)\ Read 1: 0 bp\ Read 2: 0 bp\ Total written (filtered): 318,493,927 bp (92.1%)\ Read 1: 159,207,512 bp\ Read 2: 159,286,415 bp\ \ === First read: Adapter 1 ===\ \ Sequence: GTGCCAGCMGCCGCGGTAA; Type: regular 5'; Length: 19; Trimmed: 687561 times\ \ Minimum overlap: 3\ No. of allowed errors:\ 1-9 bp: 0; 10-19 bp: 1\ \ Overview of removed sequences\ length count expect max.err error counts\ 13 2 0.0 1 2\ 14 3 0.0 1 2 1\ 15 8 0.0 1 6 2\ 16 15 0.0 1 12 3\ 17 52 0.0 1 34 18\ 18 114 0.0 1 49 65\ 19 7286 0.0 1 569 6717\ 20 679063 0.0 1 656656 22407\ 21 918 0.0 1 261 657\ 22 97 0.0 1 91 6\ 23 2 0.0 1 0 2\ 24 1 0.0 1 1\ \ \ === Second read: Adapter 2 ===\ \ Sequence: GGACTACHVGGGTWTCTAAT; Type: regular 5'; Length: 20; Trimmed: 683323 times\ \ Minimum overlap: 3\ No. of allowed errors:\ 1-9 bp: 0; 10-19 bp: 1; 20 bp: 2\ \ Overview of removed sequences\ length count expect max.err error counts\ 3 24 10766.4 0 24\ 4 4 2691.6 0 4\ 12 1 0.0 1 1\ 13 4 0.0 1 2 2\ 14 3 0.0 1 2 1\ 15 18 0.0 1 8 10\ 16 15 0.0 1 10 5\ 17 20 0.0 1 15 5\ 18 481 0.0 1 24 66 391\ 19 6704 0.0 1 797 5724 183\ 20 674111 0.0 2 651242 19848 3021\ 21 1509 0.0 2 369 1056 84\ 22 82 0.0 2 33 25 24\ 23 208 0.0 2 137 41 30\ 24 4 0.0 2 1 0 3\ 25 2 0.0 2 0 0 2\ 26 1 0.0 2 0 0 1\ 28 1 0.0 2 0 1\ 33 1 0.0 2 1\ 53 1 0.0 2 1\ 54 2 0.0 2 0 0 2\ 56 1 0.0 2 0 0 1\ 58 8 0.0 2 0 2 6\ 59 14 0.0 2 3 4 7\ 60 30 0.0 2 3 9 18\ 61 66 0.0 2 9 21 36\ 62 8 0.0 2 0 1 7\ \ Command: cutadapt --cores 3 --error-rate 0.1 --times 1 --overlap 3 --minimum-length 1 -q 0,0 --quality-base 33 -o /var/folders/kh/zt2dzkrx2x7df59wctc6jhqr0000gn/T/q2-CasavaOneEightSingleLanePerSampleDirFmt-40l92u2s/P01-06F-M7-MI-Int-R2-F6R14_S46_L001_R1_001.fastq.gz -p /var/folders/kh/zt2dzkrx2x7df59wctc6jhqr0000gn/T/q2-CasavaOneEightSingleLanePerSampleDirFmt-40l92u2s/P01-06F-M7-MI-Int-R2-F6R14_S46_L001_R2_001.fastq.gz --front GTGCCAGCMGCCGCGGTAA -G GGACTACHVGGGTWTCTAAT /var/folders/kh/zt2dzkrx2x7df59wctc6jhqr0000gn/T/qiime2/abcdef/data/d6e36ee0-da28-4588-bc05-68643a35716c/data/P01-06F-M7-MI-Int-R2-F6R14_S46_L001_R1_001.fastq.gz /var/folders/kh/zt2dzkrx2x7df59wctc6jhqr0000gn/T/qiime2/abcdef/data/d6e36ee0-da28-4588-bc05-68643a35716c/data/P01-06F-M7-MI-Int-R2-F6R14_S46_L001_R2_001.fastq.gz\ \ This is cutadapt 4.2 with Python 3.8.16\ Command line parameters: --cores 3 --error-rate 0.1 --times 1 --overlap 3 --minimum-length 1 -q 0,0 --quality-base 33 -o /var/folders/kh/zt2dzkrx2x7df59wctc6jhqr0000gn/T/q2-CasavaOneEightSingleLanePerSampleDirFmt-40l92u2s/P01-06F-M7-MI-Int-R2-F6R14_S46_L001_R1_001.fastq.gz -p /var/folders/kh/zt2dzkrx2x7df59wctc6jhqr0000gn/T/q2-CasavaOneEightSingleLanePerSampleDirFmt-40l92u2s/P01-06F-M7-MI-Int-R2-F6R14_S46_L001_R2_001.fastq.gz --front GTGCCAGCMGCCGCGGTAA -G GGACTACHVGGGTWTCTAAT /var/folders/kh/zt2dzkrx2x7df59wctc6jhqr0000gn/T/qiime2/abcdef/data/d6e36ee0-da28-4588-bc05-68643a35716c/data/P01-06F-M7-MI-Int-R2-F6R14_S46_L001_R1_001.fastq.gz /var/folders/kh/zt2dzkrx2x7df59wctc6jhqr0000gn/T/qiime2/abcdef/data/d6e36ee0-da28-4588-bc05-68643a35716c/data/P01-06F-M7-MI-Int-R2-F6R14_S46_L001_R2_001.fastq.gz\ Processing paired-end reads on 3 cores ...\ [8<----------] 00:00:01 56,995 reads @ 19.3 \'b5s/read; 3.10 M reads/minu[8=----------] 00:00:02 128,224 reads @ 15.7 \'b5s/read; 3.83 M reads/minu[ 8<---------] 00:00:03 199,453 reads @ 14.8 \'b5s/read; 4.04 M reads/minu[ 8=---------] 00:00:04 270,693 reads @ 16.0 \'b5s/read; 3.76 M reads/minu[ 8<--------] 00:00:05 341,923 reads @ 15.8 \'b5s/read; 3.81 M reads/minu[ 8=--------] 00:00:06 413,151 reads @ 15.4 \'b5s/read; 3.89 M reads/minu[ 8<-------] 00:00:07 484,391 reads @ 15.6 \'b5s/read; 3.85 M reads/minu[ 8=-------] 00:00:08 555,616 reads @ 16.0 \'b5s/read; 3.75 M reads/minu[ 8<------] 00:00:10 626,841 reads @ 15.8 \'b5s/read; 3.79 M reads/minu[ 8=------] 00:00:11 698,078 reads @ 15.8 \'b5s/read; 3.79 M reads/minuDone 00:00:12 747,564 reads @ 16.1 \'b5s/read; 3.73 M reads/minute\ Finished in 12.035 s (16.099 \'b5s/read; 3.73 M reads/minute).\ \ === Summary ===\ \ Total read pairs processed: 747,564\ Read 1 with adapter: 745,866 (99.8%)\ Read 2 with adapter: 738,557 (98.8%)\ \ == Read fate breakdown ==\ Pairs that were too short: 0 (0.0%)\ Pairs written (passing filters): 747,564 (100.0%)\ \ Total basepairs processed: 375,277,128 bp\ Read 1: 187,638,564 bp\ Read 2: 187,638,564 bp\ Quality-trimmed: 0 bp (0.0%)\ Read 1: 0 bp\ Read 2: 0 bp\ Total written (filtered): 344,859,960 bp (91.9%)\ Read 1: 172,728,434 bp\ Read 2: 172,131,526 bp\ \ === First read: Adapter 1 ===\ \ Sequence: GTGCCAGCMGCCGCGGTAA; Type: regular 5'; Length: 19; Trimmed: 745866 times\ \ Minimum overlap: 3\ No. of allowed errors:\ 1-9 bp: 0; 10-19 bp: 1\ \ Overview of removed sequences\ length count expect max.err error counts\ 12 2 0.0 1 1 1\ 14 7 0.0 1 7\ 15 9 0.0 1 5 4\ 16 9 0.0 1 5 4\ 17 48 0.0 1 28 20\ 18 128 0.0 1 61 67\ 19 7840 0.0 1 516 7324\ 20 736712 0.0 1 712038 24674\ 21 1037 0.0 1 307 730\ 22 71 0.0 1 68 3\ 23 2 0.0 1 2\ 24 1 0.0 1 1\ \ \ === Second read: Adapter 2 ===\ \ Sequence: GGACTACHVGGGTWTCTAAT; Type: regular 5'; Length: 20; Trimmed: 738557 times\ \ Minimum overlap: 3\ No. of allowed errors:\ 1-9 bp: 0; 10-19 bp: 1; 20 bp: 2\ \ Overview of removed sequences\ length count expect max.err error counts\ 3 19 11680.7 0 19\ 4 53 2920.2 0 53\ 5 1 730.0 0 1\ 13 1 0.0 1 0 1\ 14 1 0.0 1 0 1\ 15 10 0.0 1 8 2\ 16 6 0.0 1 1 5\ 17 9 0.0 1 5 4\ 18 32 0.0 1 14 17 1\ 19 500 0.0 1 38 44 418\ 20 6270 0.0 2 724 5254 292\ 21 729342 0.0 2 700652 23650 5040\ 22 1871 0.0 2 419 1360 92\ 23 340 0.0 2 175 87 78\ 24 6 0.0 2 2 1 3\ 25 1 0.0 2 0 1\ 26 2 0.0 2 2\ 27 2 0.0 2 1 0 1\ 28 2 0.0 2 2\ 29 2 0.0 2 2\ 57 1 0.0 2 0 0 1\ 58 2 0.0 2 0 1 1\ 59 8 0.0 2 1 2 5\ 60 15 0.0 2 2 3 10\ 61 29 0.0 2 3 9 17\ 62 23 0.0 2 2 5 16\ 63 7 0.0 2 2 2 3\ 64 2 0.0 2 0 0 2\ \ Command: cutadapt --cores 3 --error-rate 0.1 --times 1 --overlap 3 --minimum-length 1 -q 0,0 --quality-base 33 -o /var/folders/kh/zt2dzkrx2x7df59wctc6jhqr0000gn/T/q2-CasavaOneEightSingleLanePerSampleDirFmt-40l92u2s/P01-06G-M8-MI-Int-R1-F6R15_S47_L001_R1_001.fastq.gz -p /var/folders/kh/zt2dzkrx2x7df59wctc6jhqr0000gn/T/q2-CasavaOneEightSingleLanePerSampleDirFmt-40l92u2s/P01-06G-M8-MI-Int-R1-F6R15_S47_L001_R2_001.fastq.gz --front GTGCCAGCMGCCGCGGTAA -G GGACTACHVGGGTWTCTAAT /var/folders/kh/zt2dzkrx2x7df59wctc6jhqr0000gn/T/qiime2/abcdef/data/d6e36ee0-da28-4588-bc05-68643a35716c/data/P01-06G-M8-MI-Int-R1-F6R15_S47_L001_R1_001.fastq.gz /var/folders/kh/zt2dzkrx2x7df59wctc6jhqr0000gn/T/qiime2/abcdef/data/d6e36ee0-da28-4588-bc05-68643a35716c/data/P01-06G-M8-MI-Int-R1-F6R15_S47_L001_R2_001.fastq.gz\ \ This is cutadapt 4.2 with Python 3.8.16\ Command line parameters: --cores 3 --error-rate 0.1 --times 1 --overlap 3 --minimum-length 1 -q 0,0 --quality-base 33 -o /var/folders/kh/zt2dzkrx2x7df59wctc6jhqr0000gn/T/q2-CasavaOneEightSingleLanePerSampleDirFmt-40l92u2s/P01-06G-M8-MI-Int-R1-F6R15_S47_L001_R1_001.fastq.gz -p /var/folders/kh/zt2dzkrx2x7df59wctc6jhqr0000gn/T/q2-CasavaOneEightSingleLanePerSampleDirFmt-40l92u2s/P01-06G-M8-MI-Int-R1-F6R15_S47_L001_R2_001.fastq.gz --front GTGCCAGCMGCCGCGGTAA -G GGACTACHVGGGTWTCTAAT /var/folders/kh/zt2dzkrx2x7df59wctc6jhqr0000gn/T/qiime2/abcdef/data/d6e36ee0-da28-4588-bc05-68643a35716c/data/P01-06G-M8-MI-Int-R1-F6R15_S47_L001_R1_001.fastq.gz /var/folders/kh/zt2dzkrx2x7df59wctc6jhqr0000gn/T/qiime2/abcdef/data/d6e36ee0-da28-4588-bc05-68643a35716c/data/P01-06G-M8-MI-Int-R1-F6R15_S47_L001_R2_001.fastq.gz\ Processing paired-end reads on 3 cores ...\ Done 00:00:00 10,904 reads @ 42.4 \'b5s/read; 1.41 M reads/minute\ Finished in 0.479 s (43.960 \'b5s/read; 1.36 M reads/minute).\ \ === Summary ===\ \ Total read pairs processed: 10,904\ Read 1 with adapter: 10,864 (99.6%)\ Read 2 with adapter: 10,651 (97.7%)\ \ == Read fate breakdown ==\ Pairs that were too short: 0 (0.0%)\ Pairs written (passing filters): 10,904 (100.0%)\ \ Total basepairs processed: 5,473,808 bp\ Read 1: 2,736,904 bp\ Read 2: 2,736,904 bp\ Quality-trimmed: 0 bp (0.0%)\ Read 1: 0 bp\ Read 2: 0 bp\ Total written (filtered): 5,022,438 bp (91.8%)\ Read 1: 2,519,701 bp\ Read 2: 2,502,737 bp\ \ === First read: Adapter 1 ===\ \ Sequence: GTGCCAGCMGCCGCGGTAA; Type: regular 5'; Length: 19; Trimmed: 10864 times\ \ Minimum overlap: 3\ No. of allowed errors:\ 1-9 bp: 0; 10-19 bp: 1\ \ Overview of removed sequences\ length count expect max.err error counts\ 17 1 0.0 1 0 1\ 18 3 0.0 1 3\ 19 155 0.0 1 14 141\ 20 10637 0.0 1 10260 377\ 21 49 0.0 1 36 13\ 22 19 0.0 1 18 1\ \ \ === Second read: Adapter 2 ===\ \ Sequence: GGACTACHVGGGTWTCTAAT; Type: regular 5'; Length: 20; Trimmed: 10651 times\ \ Minimum overlap: 3\ No. of allowed errors:\ 1-9 bp: 0; 10-19 bp: 1; 20 bp: 2\ \ Overview of removed sequences\ length count expect max.err error counts\ 3 1 170.4 0 1\ 19 1 0.0 1 0 1\ 20 108 0.0 2 89 11 8\ 21 197 0.0 2 109 83 5\ 22 10213 0.0 2 9733 391 89\ 23 127 0.0 2 94 31 2\ 59 2 0.0 2 0 0 2\ 61 1 0.0 2 0 0 1\ 62 1 0.0 2 0 0 1\ \ Command: cutadapt --cores 3 --error-rate 0.1 --times 1 --overlap 3 --minimum-length 1 -q 0,0 --quality-base 33 -o /var/folders/kh/zt2dzkrx2x7df59wctc6jhqr0000gn/T/q2-CasavaOneEightSingleLanePerSampleDirFmt-40l92u2s/P01-06H-M8-MI-Int-R2-F6R16_S48_L001_R1_001.fastq.gz -p /var/folders/kh/zt2dzkrx2x7df59wctc6jhqr0000gn/T/q2-CasavaOneEightSingleLanePerSampleDirFmt-40l92u2s/P01-06H-M8-MI-Int-R2-F6R16_S48_L001_R2_001.fastq.gz --front GTGCCAGCMGCCGCGGTAA -G GGACTACHVGGGTWTCTAAT /var/folders/kh/zt2dzkrx2x7df59wctc6jhqr0000gn/T/qiime2/abcdef/data/d6e36ee0-da28-4588-bc05-68643a35716c/data/P01-06H-M8-MI-Int-R2-F6R16_S48_L001_R1_001.fastq.gz /var/folders/kh/zt2dzkrx2x7df59wctc6jhqr0000gn/T/qiime2/abcdef/data/d6e36ee0-da28-4588-bc05-68643a35716c/data/P01-06H-M8-MI-Int-R2-F6R16_S48_L001_R2_001.fastq.gz\ \ This is cutadapt 4.2 with Python 3.8.16\ Command line parameters: --cores 3 --error-rate 0.1 --times 1 --overlap 3 --minimum-length 1 -q 0,0 --quality-base 33 -o /var/folders/kh/zt2dzkrx2x7df59wctc6jhqr0000gn/T/q2-CasavaOneEightSingleLanePerSampleDirFmt-40l92u2s/P01-06H-M8-MI-Int-R2-F6R16_S48_L001_R1_001.fastq.gz -p /var/folders/kh/zt2dzkrx2x7df59wctc6jhqr0000gn/T/q2-CasavaOneEightSingleLanePerSampleDirFmt-40l92u2s/P01-06H-M8-MI-Int-R2-F6R16_S48_L001_R2_001.fastq.gz --front GTGCCAGCMGCCGCGGTAA -G GGACTACHVGGGTWTCTAAT /var/folders/kh/zt2dzkrx2x7df59wctc6jhqr0000gn/T/qiime2/abcdef/data/d6e36ee0-da28-4588-bc05-68643a35716c/data/P01-06H-M8-MI-Int-R2-F6R16_S48_L001_R1_001.fastq.gz /var/folders/kh/zt2dzkrx2x7df59wctc6jhqr0000gn/T/qiime2/abcdef/data/d6e36ee0-da28-4588-bc05-68643a35716c/data/P01-06H-M8-MI-Int-R2-F6R16_S48_L001_R2_001.fastq.gz\ Processing paired-end reads on 3 cores ...\ Done 00:00:00 5,645 reads @ 62.7 \'b5s/read; 0.96 M reads/minute\ Finished in 0.370 s (65.457 \'b5s/read; 0.92 M reads/minute).\ \ === Summary ===\ \ Total read pairs processed: 5,645\ Read 1 with adapter: 5,632 (99.8%)\ Read 2 with adapter: 5,429 (96.2%)\ \ == Read fate breakdown ==\ Pairs that were too short: 0 (0.0%)\ Pairs written (passing filters): 5,645 (100.0%)\ \ Total basepairs processed: 2,833,790 bp\ Read 1: 1,416,895 bp\ Read 2: 1,416,895 bp\ Quality-trimmed: 0 bp (0.0%)\ Read 1: 0 bp\ Read 2: 0 bp\ Total written (filtered): 2,596,800 bp (91.6%)\ Read 1: 1,304,245 bp\ Read 2: 1,292,555 bp\ \ === First read: Adapter 1 ===\ \ Sequence: GTGCCAGCMGCCGCGGTAA; Type: regular 5'; Length: 19; Trimmed: 5632 times\ \ Minimum overlap: 3\ No. of allowed errors:\ 1-9 bp: 0; 10-19 bp: 1\ \ Overview of removed sequences\ length count expect max.err error counts\ 13 1 0.0 1 0 1\ 17 1 0.0 1 0 1\ 19 69 0.0 1 6 63\ 20 5497 0.0 1 5303 194\ 21 39 0.0 1 29 10\ 22 25 0.0 1 22 3\ \ \ === Second read: Adapter 2 ===\ \ Sequence: GGACTACHVGGGTWTCTAAT; Type: regular 5'; Length: 20; Trimmed: 5429 times\ \ Minimum overlap: 3\ No. of allowed errors:\ 1-9 bp: 0; 10-19 bp: 1; 20 bp: 2\ \ Overview of removed sequences\ length count expect max.err error counts\ 3 3 88.2 0 3\ 19 1 0.0 1 1\ 20 98 0.0 2 79 8 11\ 21 82 0.0 2 66 9 7\ 22 57 0.0 2 13 42 2\ 23 5170 0.0 2 4956 176 38\ 24 17 0.0 2 5 12\ 58 1 0.0 2 0 1\ \ Command: cutadapt --cores 3 --error-rate 0.1 --times 1 --overlap 3 --minimum-length 1 -q 0,0 --quality-base 33 -o /var/folders/kh/zt2dzkrx2x7df59wctc6jhqr0000gn/T/q2-CasavaOneEightSingleLanePerSampleDirFmt-40l92u2s/P01-07A-M1-SHAM-Feces-R1-F7R9_S49_L001_R1_001.fastq.gz -p /var/folders/kh/zt2dzkrx2x7df59wctc6jhqr0000gn/T/q2-CasavaOneEightSingleLanePerSampleDirFmt-40l92u2s/P01-07A-M1-SHAM-Feces-R1-F7R9_S49_L001_R2_001.fastq.gz --front GTGCCAGCMGCCGCGGTAA -G GGACTACHVGGGTWTCTAAT /var/folders/kh/zt2dzkrx2x7df59wctc6jhqr0000gn/T/qiime2/abcdef/data/d6e36ee0-da28-4588-bc05-68643a35716c/data/P01-07A-M1-SHAM-Feces-R1-F7R9_S49_L001_R1_001.fastq.gz /var/folders/kh/zt2dzkrx2x7df59wctc6jhqr0000gn/T/qiime2/abcdef/data/d6e36ee0-da28-4588-bc05-68643a35716c/data/P01-07A-M1-SHAM-Feces-R1-F7R9_S49_L001_R2_001.fastq.gz\ \ This is cutadapt 4.2 with Python 3.8.16\ Command line parameters: --cores 3 --error-rate 0.1 --times 1 --overlap 3 --minimum-length 1 -q 0,0 --quality-base 33 -o /var/folders/kh/zt2dzkrx2x7df59wctc6jhqr0000gn/T/q2-CasavaOneEightSingleLanePerSampleDirFmt-40l92u2s/P01-07A-M1-SHAM-Feces-R1-F7R9_S49_L001_R1_001.fastq.gz -p /var/folders/kh/zt2dzkrx2x7df59wctc6jhqr0000gn/T/q2-CasavaOneEightSingleLanePerSampleDirFmt-40l92u2s/P01-07A-M1-SHAM-Feces-R1-F7R9_S49_L001_R2_001.fastq.gz --front GTGCCAGCMGCCGCGGTAA -G GGACTACHVGGGTWTCTAAT /var/folders/kh/zt2dzkrx2x7df59wctc6jhqr0000gn/T/qiime2/abcdef/data/d6e36ee0-da28-4588-bc05-68643a35716c/data/P01-07A-M1-SHAM-Feces-R1-F7R9_S49_L001_R1_001.fastq.gz /var/folders/kh/zt2dzkrx2x7df59wctc6jhqr0000gn/T/qiime2/abcdef/data/d6e36ee0-da28-4588-bc05-68643a35716c/data/P01-07A-M1-SHAM-Feces-R1-F7R9_S49_L001_R2_001.fastq.gz\ Processing paired-end reads on 3 cores ...\ [8<----------] 00:00:01 56,985 reads @ 18.7 \'b5s/read; 3.20 M reads/minuDone 00:00:01 63,919 reads @ 19.9 \'b5s/read; 3.02 M reads/minute\ Finished in 1.293 s (20.225 \'b5s/read; 2.97 M reads/minute).\ \ === Summary ===\ \ Total read pairs processed: 63,919\ Read 1 with adapter: 63,759 (99.7%)\ Read 2 with adapter: 63,179 (98.8%)\ \ == Read fate breakdown ==\ Pairs that were too short: 0 (0.0%)\ Pairs written (passing filters): 63,919 (100.0%)\ \ Total basepairs processed: 32,087,338 bp\ Read 1: 16,043,669 bp\ Read 2: 16,043,669 bp\ Quality-trimmed: 0 bp (0.0%)\ Read 1: 0 bp\ Read 2: 0 bp\ Total written (filtered): 29,485,032 bp (91.9%)\ Read 1: 14,705,206 bp\ Read 2: 14,779,826 bp\ \ === First read: Adapter 1 ===\ \ Sequence: GTGCCAGCMGCCGCGGTAA; Type: regular 5'; Length: 19; Trimmed: 63759 times\ \ Minimum overlap: 3\ No. of allowed errors:\ 1-9 bp: 0; 10-19 bp: 1\ \ Overview of removed sequences\ length count expect max.err error counts\ 14 1 0.0 1 1\ 17 1 0.0 1 0 1\ 18 3 0.0 1 2 1\ 19 17 0.0 1 6 11\ 20 555 0.0 1 122 433\ 21 63049 0.0 1 59390 3659\ 22 133 0.0 1 35 98\ \ \ === Second read: Adapter 2 ===\ \ Sequence: GGACTACHVGGGTWTCTAAT; Type: regular 5'; Length: 20; Trimmed: 63179 times\ \ Minimum overlap: 3\ No. of allowed errors:\ 1-9 bp: 0; 10-19 bp: 1; 20 bp: 2\ \ Overview of removed sequences\ length count expect max.err error counts\ 3 5 998.7 0 5\ 12 1 0.0 1 0 1\ 15 2 0.0 1 2\ 17 2 0.0 1 1 1\ 18 60 0.0 1 0 11 49\ 19 671 0.0 1 121 526 24\ 20 62299 0.0 2 60151 1843 305\ 21 86 0.0 2 21 57 8\ 22 11 0.0 2 5 2 4\ 23 16 0.0 2 10 3 3\ 27 1 0.0 2 0 1\ 54 1 0.0 2 0 1\ 57 1 0.0 2 0 1\ 58 1 0.0 2 0 0 1\ 59 1 0.0 2 1\ 60 10 0.0 2 1 4 5\ 61 10 0.0 2 0 4 6\ 62 1 0.0 2 0 0 1\ \ Command: cutadapt --cores 3 --error-rate 0.1 --times 1 --overlap 3 --minimum-length 1 -q 0,0 --quality-base 33 -o /var/folders/kh/zt2dzkrx2x7df59wctc6jhqr0000gn/T/q2-CasavaOneEightSingleLanePerSampleDirFmt-40l92u2s/P01-07B-M1-SHAM-Feces-R2-F7R10_S50_L001_R1_001.fastq.gz -p /var/folders/kh/zt2dzkrx2x7df59wctc6jhqr0000gn/T/q2-CasavaOneEightSingleLanePerSampleDirFmt-40l92u2s/P01-07B-M1-SHAM-Feces-R2-F7R10_S50_L001_R2_001.fastq.gz --front GTGCCAGCMGCCGCGGTAA -G GGACTACHVGGGTWTCTAAT /var/folders/kh/zt2dzkrx2x7df59wctc6jhqr0000gn/T/qiime2/abcdef/data/d6e36ee0-da28-4588-bc05-68643a35716c/data/P01-07B-M1-SHAM-Feces-R2-F7R10_S50_L001_R1_001.fastq.gz /var/folders/kh/zt2dzkrx2x7df59wctc6jhqr0000gn/T/qiime2/abcdef/data/d6e36ee0-da28-4588-bc05-68643a35716c/data/P01-07B-M1-SHAM-Feces-R2-F7R10_S50_L001_R2_001.fastq.gz\ \ This is cutadapt 4.2 with Python 3.8.16\ Command line parameters: --cores 3 --error-rate 0.1 --times 1 --overlap 3 --minimum-length 1 -q 0,0 --quality-base 33 -o /var/folders/kh/zt2dzkrx2x7df59wctc6jhqr0000gn/T/q2-CasavaOneEightSingleLanePerSampleDirFmt-40l92u2s/P01-07B-M1-SHAM-Feces-R2-F7R10_S50_L001_R1_001.fastq.gz -p /var/folders/kh/zt2dzkrx2x7df59wctc6jhqr0000gn/T/q2-CasavaOneEightSingleLanePerSampleDirFmt-40l92u2s/P01-07B-M1-SHAM-Feces-R2-F7R10_S50_L001_R2_001.fastq.gz --front GTGCCAGCMGCCGCGGTAA -G GGACTACHVGGGTWTCTAAT /var/folders/kh/zt2dzkrx2x7df59wctc6jhqr0000gn/T/qiime2/abcdef/data/d6e36ee0-da28-4588-bc05-68643a35716c/data/P01-07B-M1-SHAM-Feces-R2-F7R10_S50_L001_R1_001.fastq.gz /var/folders/kh/zt2dzkrx2x7df59wctc6jhqr0000gn/T/qiime2/abcdef/data/d6e36ee0-da28-4588-bc05-68643a35716c/data/P01-07B-M1-SHAM-Feces-R2-F7R10_S50_L001_R2_001.fastq.gz\ Processing paired-end reads on 3 cores ...\ Done 00:00:00 40,026 reads @ 21.9 \'b5s/read; 2.74 M reads/minute\ Finished in 0.896 s (22.376 \'b5s/read; 2.68 M reads/minute).\ \ === Summary ===\ \ Total read pairs processed: 40,026\ Read 1 with adapter: 39,915 (99.7%)\ Read 2 with adapter: 39,429 (98.5%)\ \ == Read fate breakdown ==\ Pairs that were too short: 0 (0.0%)\ Pairs written (passing filters): 40,026 (100.0%)\ \ Total basepairs processed: 20,093,052 bp\ Read 1: 10,046,526 bp\ Read 2: 10,046,526 bp\ Quality-trimmed: 0 bp (0.0%)\ Read 1: 0 bp\ Read 2: 0 bp\ Total written (filtered): 18,425,192 bp (91.7%)\ Read 1: 9,208,578 bp\ Read 2: 9,216,614 bp\ \ === First read: Adapter 1 ===\ \ Sequence: GTGCCAGCMGCCGCGGTAA; Type: regular 5'; Length: 19; Trimmed: 39915 times\ \ Minimum overlap: 3\ No. of allowed errors:\ 1-9 bp: 0; 10-19 bp: 1\ \ Overview of removed sequences\ length count expect max.err error counts\ 17 1 0.0 1 1\ 19 13 0.0 1 7 6\ 20 354 0.0 1 79 275\ 21 39431 0.0 1 37094 2337\ 22 115 0.0 1 34 81\ 23 1 0.0 1 1\ \ \ === Second read: Adapter 2 ===\ \ Sequence: GGACTACHVGGGTWTCTAAT; Type: regular 5'; Length: 20; Trimmed: 39429 times\ \ Minimum overlap: 3\ No. of allowed errors:\ 1-9 bp: 0; 10-19 bp: 1; 20 bp: 2\ \ Overview of removed sequences\ length count expect max.err error counts\ 3 4 625.4 0 4\ 14 2 0.0 1 1 1\ 15 2 0.0 1 1 1\ 16 1 0.0 1 1\ 17 4 0.0 1 3 1\ 18 4 0.0 1 0 4\ 19 53 0.0 1 9 9 35\ 20 553 0.0 2 86 448 19\ 21 38615 0.0 2 37058 1323 234\ 22 84 0.0 2 30 50 4\ 23 43 0.0 2 29 11 3\ 57 1 0.0 2 0 1\ 58 3 0.0 2 0 2 1\ 59 10 0.0 2 1 4 5\ 60 17 0.0 2 5 6 6\ 61 22 0.0 2 1 10 11\ 62 9 0.0 2 0 0 9\ 63 2 0.0 2 0 0 2\ \ Command: cutadapt --cores 3 --error-rate 0.1 --times 1 --overlap 3 --minimum-length 1 -q 0,0 --quality-base 33 -o /var/folders/kh/zt2dzkrx2x7df59wctc6jhqr0000gn/T/q2-CasavaOneEightSingleLanePerSampleDirFmt-40l92u2s/P01-07C-M2-SHAM-Feces-R1-F7R11_S51_L001_R1_001.fastq.gz -p /var/folders/kh/zt2dzkrx2x7df59wctc6jhqr0000gn/T/q2-CasavaOneEightSingleLanePerSampleDirFmt-40l92u2s/P01-07C-M2-SHAM-Feces-R1-F7R11_S51_L001_R2_001.fastq.gz --front GTGCCAGCMGCCGCGGTAA -G GGACTACHVGGGTWTCTAAT /var/folders/kh/zt2dzkrx2x7df59wctc6jhqr0000gn/T/qiime2/abcdef/data/d6e36ee0-da28-4588-bc05-68643a35716c/data/P01-07C-M2-SHAM-Feces-R1-F7R11_S51_L001_R1_001.fastq.gz /var/folders/kh/zt2dzkrx2x7df59wctc6jhqr0000gn/T/qiime2/abcdef/data/d6e36ee0-da28-4588-bc05-68643a35716c/data/P01-07C-M2-SHAM-Feces-R1-F7R11_S51_L001_R2_001.fastq.gz\ \ This is cutadapt 4.2 with Python 3.8.16\ Command line parameters: --cores 3 --error-rate 0.1 --times 1 --overlap 3 --minimum-length 1 -q 0,0 --quality-base 33 -o /var/folders/kh/zt2dzkrx2x7df59wctc6jhqr0000gn/T/q2-CasavaOneEightSingleLanePerSampleDirFmt-40l92u2s/P01-07C-M2-SHAM-Feces-R1-F7R11_S51_L001_R1_001.fastq.gz -p /var/folders/kh/zt2dzkrx2x7df59wctc6jhqr0000gn/T/q2-CasavaOneEightSingleLanePerSampleDirFmt-40l92u2s/P01-07C-M2-SHAM-Feces-R1-F7R11_S51_L001_R2_001.fastq.gz --front GTGCCAGCMGCCGCGGTAA -G GGACTACHVGGGTWTCTAAT /var/folders/kh/zt2dzkrx2x7df59wctc6jhqr0000gn/T/qiime2/abcdef/data/d6e36ee0-da28-4588-bc05-68643a35716c/data/P01-07C-M2-SHAM-Feces-R1-F7R11_S51_L001_R1_001.fastq.gz /var/folders/kh/zt2dzkrx2x7df59wctc6jhqr0000gn/T/qiime2/abcdef/data/d6e36ee0-da28-4588-bc05-68643a35716c/data/P01-07C-M2-SHAM-Feces-R1-F7R11_S51_L001_R2_001.fastq.gz\ Processing paired-end reads on 3 cores ...\ [8<----------] 00:00:01 56,995 reads @ 19.2 \'b5s/read; 3.13 M reads/minu[8=----------] 00:00:02 128,222 reads @ 15.8 \'b5s/read; 3.79 M reads/minu[ 8<---------] 00:00:03 199,448 reads @ 15.7 \'b5s/read; 3.81 M reads/minu[ 8=---------] 00:00:04 270,690 reads @ 16.7 \'b5s/read; 3.60 M reads/minu[ 8<--------] 00:00:05 341,919 reads @ 16.1 \'b5s/read; 3.72 M reads/minu[ 8=--------] 00:00:06 413,145 reads @ 16.0 \'b5s/read; 3.74 M reads/minu[ 8<-------] 00:00:07 484,388 reads @ 15.9 \'b5s/read; 3.78 M reads/minu[ 8=-------] 00:00:09 555,611 reads @ 16.6 \'b5s/read; 3.62 M reads/minu[ 8<------] 00:00:10 626,842 reads @ 15.9 \'b5s/read; 3.76 M reads/minu[ 8=------] 00:00:11 698,067 reads @ 16.7 \'b5s/read; 3.59 M reads/minuDone 00:00:12 744,500 reads @ 16.5 \'b5s/read; 3.63 M reads/minute\ Finished in 12.330 s (16.562 \'b5s/read; 3.62 M reads/minute).\ \ === Summary ===\ \ Total read pairs processed: 744,500\ Read 1 with adapter: 742,605 (99.7%)\ Read 2 with adapter: 739,173 (99.3%)\ \ == Read fate breakdown ==\ Pairs that were too short: 0 (0.0%)\ Pairs written (passing filters): 744,500 (100.0%)\ \ Total basepairs processed: 373,739,000 bp\ Read 1: 186,869,500 bp\ Read 2: 186,869,500 bp\ Quality-trimmed: 0 bp (0.0%)\ Read 1: 0 bp\ Read 2: 0 bp\ Total written (filtered): 341,889,987 bp (91.5%)\ Read 1: 171,279,690 bp\ Read 2: 170,610,297 bp\ \ === First read: Adapter 1 ===\ \ Sequence: GTGCCAGCMGCCGCGGTAA; Type: regular 5'; Length: 19; Trimmed: 742605 times\ \ Minimum overlap: 3\ No. of allowed errors:\ 1-9 bp: 0; 10-19 bp: 1\ \ Overview of removed sequences\ length count expect max.err error counts\ 3 5 11632.8 0 5\ 15 2 0.0 1 0 2\ 17 7 0.0 1 4 3\ 18 17 0.0 1 9 8\ 19 186 0.0 1 77 109\ 20 6191 0.0 1 1742 4449\ 21 734359 0.0 1 692317 42042\ 22 1833 0.0 1 414 1419\ 23 1 0.0 1 1\ 24 2 0.0 1 2\ 25 2 0.0 1 1 1\ \ \ === Second read: Adapter 2 ===\ \ Sequence: GGACTACHVGGGTWTCTAAT; Type: regular 5'; Length: 20; Trimmed: 739173 times\ \ Minimum overlap: 3\ No. of allowed errors:\ 1-9 bp: 0; 10-19 bp: 1; 20 bp: 2\ \ Overview of removed sequences\ length count expect max.err error counts\ 3 15 11632.8 0 15\ 4 3 2908.2 0 3\ 14 1 0.0 1 0 1\ 15 4 0.0 1 3 1\ 16 1 0.0 1 0 1\ 18 5 0.0 1 4 1\ 19 10 0.0 1 8 2\ 20 340 0.0 2 86 40 214\ 21 5345 0.0 2 748 4397 200\ 22 731205 0.0 2 706333 21282 3590\ 23 2200 0.0 2 685 1402 113\ 24 2 0.0 2 1 1\ 51 1 0.0 2 0 1\ 56 1 0.0 2 0 0 1\ 58 2 0.0 2 0 0 2\ 59 4 0.0 2 0 3 1\ 60 4 0.0 2 1 1 2\ 61 6 0.0 2 0 1 5\ 62 7 0.0 2 2 0 5\ 63 14 0.0 2 0 5 9\ 64 3 0.0 2 0 0 3\ \ Command: cutadapt --cores 3 --error-rate 0.1 --times 1 --overlap 3 --minimum-length 1 -q 0,0 --quality-base 33 -o /var/folders/kh/zt2dzkrx2x7df59wctc6jhqr0000gn/T/q2-CasavaOneEightSingleLanePerSampleDirFmt-40l92u2s/P01-07D-M2-SHAM-Feces-R2-F7R12_S52_L001_R1_001.fastq.gz -p /var/folders/kh/zt2dzkrx2x7df59wctc6jhqr0000gn/T/q2-CasavaOneEightSingleLanePerSampleDirFmt-40l92u2s/P01-07D-M2-SHAM-Feces-R2-F7R12_S52_L001_R2_001.fastq.gz --front GTGCCAGCMGCCGCGGTAA -G GGACTACHVGGGTWTCTAAT /var/folders/kh/zt2dzkrx2x7df59wctc6jhqr0000gn/T/qiime2/abcdef/data/d6e36ee0-da28-4588-bc05-68643a35716c/data/P01-07D-M2-SHAM-Feces-R2-F7R12_S52_L001_R1_001.fastq.gz /var/folders/kh/zt2dzkrx2x7df59wctc6jhqr0000gn/T/qiime2/abcdef/data/d6e36ee0-da28-4588-bc05-68643a35716c/data/P01-07D-M2-SHAM-Feces-R2-F7R12_S52_L001_R2_001.fastq.gz\ \ This is cutadapt 4.2 with Python 3.8.16\ Command line parameters: --cores 3 --error-rate 0.1 --times 1 --overlap 3 --minimum-length 1 -q 0,0 --quality-base 33 -o /var/folders/kh/zt2dzkrx2x7df59wctc6jhqr0000gn/T/q2-CasavaOneEightSingleLanePerSampleDirFmt-40l92u2s/P01-07D-M2-SHAM-Feces-R2-F7R12_S52_L001_R1_001.fastq.gz -p /var/folders/kh/zt2dzkrx2x7df59wctc6jhqr0000gn/T/q2-CasavaOneEightSingleLanePerSampleDirFmt-40l92u2s/P01-07D-M2-SHAM-Feces-R2-F7R12_S52_L001_R2_001.fastq.gz --front GTGCCAGCMGCCGCGGTAA -G GGACTACHVGGGTWTCTAAT /var/folders/kh/zt2dzkrx2x7df59wctc6jhqr0000gn/T/qiime2/abcdef/data/d6e36ee0-da28-4588-bc05-68643a35716c/data/P01-07D-M2-SHAM-Feces-R2-F7R12_S52_L001_R1_001.fastq.gz /var/folders/kh/zt2dzkrx2x7df59wctc6jhqr0000gn/T/qiime2/abcdef/data/d6e36ee0-da28-4588-bc05-68643a35716c/data/P01-07D-M2-SHAM-Feces-R2-F7R12_S52_L001_R2_001.fastq.gz\ Processing paired-end reads on 3 cores ...\ [8<----------] 00:00:01 56,985 reads @ 19.1 \'b5s/read; 3.13 M reads/minu[8=----------] 00:00:02 128,224 reads @ 16.8 \'b5s/read; 3.56 M reads/minu[ 8<---------] 00:00:03 192,332 reads @ 15.7 \'b5s/read; 3.83 M reads/minu[ 8=---------] 00:00:04 256,437 reads @ 18.2 \'b5s/read; 3.29 M reads/minu[ 8<--------] 00:00:05 327,677 reads @ 16.6 \'b5s/read; 3.61 M reads/minu[ 8=--------] 00:00:06 398,898 reads @ 17.2 \'b5s/read; 3.49 M reads/minuDone 00:00:07 455,338 reads @ 17.4 \'b5s/read; 3.44 M reads/minute\ Finished in 7.952 s (17.464 \'b5s/read; 3.44 M reads/minute).\ \ === Summary ===\ \ Total read pairs processed: 455,338\ Read 1 with adapter: 454,116 (99.7%)\ Read 2 with adapter: 450,044 (98.8%)\ \ == Read fate breakdown ==\ Pairs that were too short: 0 (0.0%)\ Pairs written (passing filters): 455,338 (100.0%)\ \ Total basepairs processed: 228,579,676 bp\ Read 1: 114,289,838 bp\ Read 2: 114,289,838 bp\ Quality-trimmed: 0 bp (0.0%)\ Read 1: 0 bp\ Read 2: 0 bp\ Total written (filtered): 208,697,572 bp (91.3%)\ Read 1: 104,756,592 bp\ Read 2: 103,940,980 bp\ \ === First read: Adapter 1 ===\ \ Sequence: GTGCCAGCMGCCGCGGTAA; Type: regular 5'; Length: 19; Trimmed: 454116 times\ \ Minimum overlap: 3\ No. of allowed errors:\ 1-9 bp: 0; 10-19 bp: 1\ \ Overview of removed sequences\ length count expect max.err error counts\ 3 3 7114.7 0 3\ 14 1 0.0 1 1\ 16 2 0.0 1 2\ 17 3 0.0 1 2 1\ 18 9 0.0 1 7 2\ 19 133 0.0 1 56 77\ 20 3900 0.0 1 1098 2802\ 21 448987 0.0 1 422883 26104\ 22 1073 0.0 1 251 822\ 23 3 0.0 1 2 1\ 24 1 0.0 1 1\ 25 1 0.0 1 1\ \ \ === Second read: Adapter 2 ===\ \ Sequence: GGACTACHVGGGTWTCTAAT; Type: regular 5'; Length: 20; Trimmed: 450044 times\ \ Minimum overlap: 3\ No. of allowed errors:\ 1-9 bp: 0; 10-19 bp: 1; 20 bp: 2\ \ Overview of removed sequences\ length count expect max.err error counts\ 3 78 7114.7 0 78\ 4 20 1778.7 0 20\ 15 1 0.0 1 1\ 17 2 0.0 1 0 2\ 18 3 0.0 1 1 2\ 19 15 0.0 1 4 11\ 20 68 0.0 2 35 18 15\ 21 443 0.0 2 148 83 212\ 22 3965 0.0 2 1121 2686 158\ 23 444350 0.0 2 426700 14692 2958\ 24 997 0.0 2 318 634 45\ 25 4 0.0 2 0 3 1\ 58 2 0.0 2 1 1\ 59 3 0.0 2 0 0 3\ 60 1 0.0 2 0 0 1\ 61 8 0.0 2 1 3 4\ 62 7 0.0 2 0 2 5\ 63 28 0.0 2 2 8 18\ 64 40 0.0 2 0 13 27\ 65 8 0.0 2 2 2 4\ 66 1 0.0 2 0 0 1\ \ Command: cutadapt --cores 3 --error-rate 0.1 --times 1 --overlap 3 --minimum-length 1 -q 0,0 --quality-base 33 -o /var/folders/kh/zt2dzkrx2x7df59wctc6jhqr0000gn/T/q2-CasavaOneEightSingleLanePerSampleDirFmt-40l92u2s/P01-07E-M3-SHAM-Feces-R1-F7R13_S53_L001_R1_001.fastq.gz -p /var/folders/kh/zt2dzkrx2x7df59wctc6jhqr0000gn/T/q2-CasavaOneEightSingleLanePerSampleDirFmt-40l92u2s/P01-07E-M3-SHAM-Feces-R1-F7R13_S53_L001_R2_001.fastq.gz --front GTGCCAGCMGCCGCGGTAA -G GGACTACHVGGGTWTCTAAT /var/folders/kh/zt2dzkrx2x7df59wctc6jhqr0000gn/T/qiime2/abcdef/data/d6e36ee0-da28-4588-bc05-68643a35716c/data/P01-07E-M3-SHAM-Feces-R1-F7R13_S53_L001_R1_001.fastq.gz /var/folders/kh/zt2dzkrx2x7df59wctc6jhqr0000gn/T/qiime2/abcdef/data/d6e36ee0-da28-4588-bc05-68643a35716c/data/P01-07E-M3-SHAM-Feces-R1-F7R13_S53_L001_R2_001.fastq.gz\ \ This is cutadapt 4.2 with Python 3.8.16\ Command line parameters: --cores 3 --error-rate 0.1 --times 1 --overlap 3 --minimum-length 1 -q 0,0 --quality-base 33 -o /var/folders/kh/zt2dzkrx2x7df59wctc6jhqr0000gn/T/q2-CasavaOneEightSingleLanePerSampleDirFmt-40l92u2s/P01-07E-M3-SHAM-Feces-R1-F7R13_S53_L001_R1_001.fastq.gz -p /var/folders/kh/zt2dzkrx2x7df59wctc6jhqr0000gn/T/q2-CasavaOneEightSingleLanePerSampleDirFmt-40l92u2s/P01-07E-M3-SHAM-Feces-R1-F7R13_S53_L001_R2_001.fastq.gz --front GTGCCAGCMGCCGCGGTAA -G GGACTACHVGGGTWTCTAAT /var/folders/kh/zt2dzkrx2x7df59wctc6jhqr0000gn/T/qiime2/abcdef/data/d6e36ee0-da28-4588-bc05-68643a35716c/data/P01-07E-M3-SHAM-Feces-R1-F7R13_S53_L001_R1_001.fastq.gz /var/folders/kh/zt2dzkrx2x7df59wctc6jhqr0000gn/T/qiime2/abcdef/data/d6e36ee0-da28-4588-bc05-68643a35716c/data/P01-07E-M3-SHAM-Feces-R1-F7R13_S53_L001_R2_001.fastq.gz\ Processing paired-end reads on 3 cores ...\ [8<----------] 00:00:01 56,989 reads @ 18.1 \'b5s/read; 3.32 M reads/minuDone 00:00:01 79,750 reads @ 18.4 \'b5s/read; 3.26 M reads/minute\ Finished in 1.484 s (18.602 \'b5s/read; 3.23 M reads/minute).\ \ === Summary ===\ \ Total read pairs processed: 79,750\ Read 1 with adapter: 79,542 (99.7%)\ Read 2 with adapter: 78,988 (99.0%)\ \ == Read fate breakdown ==\ Pairs that were too short: 0 (0.0%)\ Pairs written (passing filters): 79,750 (100.0%)\ \ Total basepairs processed: 40,034,500 bp\ Read 1: 20,017,250 bp\ Read 2: 20,017,250 bp\ Quality-trimmed: 0 bp (0.0%)\ Read 1: 0 bp\ Read 2: 0 bp\ Total written (filtered): 36,784,399 bp (91.9%)\ Read 1: 18,347,434 bp\ Read 2: 18,436,965 bp\ \ === First read: Adapter 1 ===\ \ Sequence: GTGCCAGCMGCCGCGGTAA; Type: regular 5'; Length: 19; Trimmed: 79542 times\ \ Minimum overlap: 3\ No. of allowed errors:\ 1-9 bp: 0; 10-19 bp: 1\ \ Overview of removed sequences\ length count expect max.err error counts\ 3 1 1246.1 0 1\ 17 2 0.0 1 0 2\ 18 5 0.0 1 1 4\ 19 24 0.0 1 9 15\ 20 698 0.0 1 205 493\ 21 78591 0.0 1 73984 4607\ 22 221 0.0 1 69 152\ \ \ === Second read: Adapter 2 ===\ \ Sequence: GGACTACHVGGGTWTCTAAT; Type: regular 5'; Length: 20; Trimmed: 78988 times\ \ Minimum overlap: 3\ No. of allowed errors:\ 1-9 bp: 0; 10-19 bp: 1; 20 bp: 2\ \ Overview of removed sequences\ length count expect max.err error counts\ 3 1 1246.1 0 1\ 4 1 311.5 0 1\ 14 1 0.0 1 1\ 15 1 0.0 1 1\ 17 3 0.0 1 1 2\ 18 63 0.0 1 3 6 54\ 19 690 0.0 1 89 579 22\ 20 77793 0.0 2 75087 2321 385\ 21 252 0.0 2 100 142 10\ 22 83 0.0 2 70 6 7\ 23 80 0.0 2 68 10 2\ 24 1 0.0 2 1\ 25 1 0.0 2 0 0 1\ 59 2 0.0 2 0 0 2\ 60 8 0.0 2 1 3 4\ 61 7 0.0 2 1 3 3\ 62 1 0.0 2 0 0 1\ \ Command: cutadapt --cores 3 --error-rate 0.1 --times 1 --overlap 3 --minimum-length 1 -q 0,0 --quality-base 33 -o /var/folders/kh/zt2dzkrx2x7df59wctc6jhqr0000gn/T/q2-CasavaOneEightSingleLanePerSampleDirFmt-40l92u2s/P01-07F-M3-SHAM-Feces-R2-F7R14_S54_L001_R1_001.fastq.gz -p /var/folders/kh/zt2dzkrx2x7df59wctc6jhqr0000gn/T/q2-CasavaOneEightSingleLanePerSampleDirFmt-40l92u2s/P01-07F-M3-SHAM-Feces-R2-F7R14_S54_L001_R2_001.fastq.gz --front GTGCCAGCMGCCGCGGTAA -G GGACTACHVGGGTWTCTAAT /var/folders/kh/zt2dzkrx2x7df59wctc6jhqr0000gn/T/qiime2/abcdef/data/d6e36ee0-da28-4588-bc05-68643a35716c/data/P01-07F-M3-SHAM-Feces-R2-F7R14_S54_L001_R1_001.fastq.gz /var/folders/kh/zt2dzkrx2x7df59wctc6jhqr0000gn/T/qiime2/abcdef/data/d6e36ee0-da28-4588-bc05-68643a35716c/data/P01-07F-M3-SHAM-Feces-R2-F7R14_S54_L001_R2_001.fastq.gz\ \ This is cutadapt 4.2 with Python 3.8.16\ Command line parameters: --cores 3 --error-rate 0.1 --times 1 --overlap 3 --minimum-length 1 -q 0,0 --quality-base 33 -o /var/folders/kh/zt2dzkrx2x7df59wctc6jhqr0000gn/T/q2-CasavaOneEightSingleLanePerSampleDirFmt-40l92u2s/P01-07F-M3-SHAM-Feces-R2-F7R14_S54_L001_R1_001.fastq.gz -p /var/folders/kh/zt2dzkrx2x7df59wctc6jhqr0000gn/T/q2-CasavaOneEightSingleLanePerSampleDirFmt-40l92u2s/P01-07F-M3-SHAM-Feces-R2-F7R14_S54_L001_R2_001.fastq.gz --front GTGCCAGCMGCCGCGGTAA -G GGACTACHVGGGTWTCTAAT /var/folders/kh/zt2dzkrx2x7df59wctc6jhqr0000gn/T/qiime2/abcdef/data/d6e36ee0-da28-4588-bc05-68643a35716c/data/P01-07F-M3-SHAM-Feces-R2-F7R14_S54_L001_R1_001.fastq.gz /var/folders/kh/zt2dzkrx2x7df59wctc6jhqr0000gn/T/qiime2/abcdef/data/d6e36ee0-da28-4588-bc05-68643a35716c/data/P01-07F-M3-SHAM-Feces-R2-F7R14_S54_L001_R2_001.fastq.gz\ Processing paired-end reads on 3 cores ...\ [8<----------] 00:00:01 56,988 reads @ 18.1 \'b5s/read; 3.32 M reads/minu[8=----------] 00:00:02 128,223 reads @ 14.8 \'b5s/read; 4.06 M reads/minu[ 8<---------] 00:00:03 199,457 reads @ 15.1 \'b5s/read; 3.98 M reads/minu[ 8=---------] 00:00:04 270,690 reads @ 15.2 \'b5s/read; 3.95 M reads/minu[ 8<--------] 00:00:05 341,922 reads @ 15.2 \'b5s/read; 3.95 M reads/minu[ 8=--------] 00:00:06 413,159 reads @ 15.9 \'b5s/read; 3.77 M reads/minu[ 8<-------] 00:00:07 484,390 reads @ 15.1 \'b5s/read; 3.98 M reads/minu[ 8=-------] 00:00:08 555,620 reads @ 15.7 \'b5s/read; 3.83 M reads/minu[ 8<------] 00:00:09 633,969 reads @ 14.2 \'b5s/read; 4.22 M reads/minuDone 00:00:09 641,362 reads @ 15.5 \'b5s/read; 3.86 M reads/minute\ Finished in 9.992 s (15.579 \'b5s/read; 3.85 M reads/minute).\ \ === Summary ===\ \ Total read pairs processed: 641,362\ Read 1 with adapter: 639,545 (99.7%)\ Read 2 with adapter: 634,972 (99.0%)\ \ == Read fate breakdown ==\ Pairs that were too short: 0 (0.0%)\ Pairs written (passing filters): 641,362 (100.0%)\ \ Total basepairs processed: 321,963,724 bp\ Read 1: 160,981,862 bp\ Read 2: 160,981,862 bp\ Quality-trimmed: 0 bp (0.0%)\ Read 1: 0 bp\ Read 2: 0 bp\ Total written (filtered): 295,205,632 bp (91.7%)\ Read 1: 147,556,224 bp\ Read 2: 147,649,408 bp\ \ === First read: Adapter 1 ===\ \ Sequence: GTGCCAGCMGCCGCGGTAA; Type: regular 5'; Length: 19; Trimmed: 639545 times\ \ Minimum overlap: 3\ No. of allowed errors:\ 1-9 bp: 0; 10-19 bp: 1\ \ Overview of removed sequences\ length count expect max.err error counts\ 3 3 10021.3 0 3\ 17 7 0.0 1 5 2\ 18 17 0.0 1 11 6\ 19 169 0.0 1 76 93\ 20 5917 0.0 1 1599 4318\ 21 631881 0.0 1 594100 37781\ 22 1541 0.0 1 353 1188\ 23 7 0.0 1 4 3\ 26 2 0.0 1 2\ 37 1 0.0 1 1\ \ \ === Second read: Adapter 2 ===\ \ Sequence: GGACTACHVGGGTWTCTAAT; Type: regular 5'; Length: 20; Trimmed: 634972 times\ \ Minimum overlap: 3\ No. of allowed errors:\ 1-9 bp: 0; 10-19 bp: 1; 20 bp: 2\ \ Overview of removed sequences\ length count expect max.err error counts\ 3 8 10021.3 0 8\ 4 54 2505.3 0 54\ 7 1 39.1 0 1\ 12 3 0.0 1 3\ 13 1 0.0 1 1\ 15 4 0.0 1 3 1\ 16 5 0.0 1 4 1\ 17 13 0.0 1 5 8\ 18 11 0.0 1 5 6\ 19 431 0.0 1 31 45 355\ 20 5006 0.0 2 586 4208 212\ 21 627460 0.0 2 603410 20252 3798\ 22 1630 0.0 2 432 1102 96\ 23 265 0.0 2 151 52 62\ 24 2 0.0 2 0 0 2\ 27 2 0.0 2 2\ 29 1 0.0 2 1\ 52 1 0.0 2 0 1\ 56 1 0.0 2 0 0 1\ 57 1 0.0 2 0 0 1\ 58 3 0.0 2 0 2 1\ 59 11 0.0 2 1 4 6\ 60 15 0.0 2 1 4 10\ 61 20 0.0 2 1 9 10\ 62 18 0.0 2 3 4 11\ 63 3 0.0 2 1 0 2\ 65 1 0.0 2 0 1\ 66 1 0.0 2 0 0 1\ \ Command: cutadapt --cores 3 --error-rate 0.1 --times 1 --overlap 3 --minimum-length 1 -q 0,0 --quality-base 33 -o /var/folders/kh/zt2dzkrx2x7df59wctc6jhqr0000gn/T/q2-CasavaOneEightSingleLanePerSampleDirFmt-40l92u2s/P01-07G-M4-SHAM-Feces-R1-F7R15_S55_L001_R1_001.fastq.gz -p /var/folders/kh/zt2dzkrx2x7df59wctc6jhqr0000gn/T/q2-CasavaOneEightSingleLanePerSampleDirFmt-40l92u2s/P01-07G-M4-SHAM-Feces-R1-F7R15_S55_L001_R2_001.fastq.gz --front GTGCCAGCMGCCGCGGTAA -G GGACTACHVGGGTWTCTAAT /var/folders/kh/zt2dzkrx2x7df59wctc6jhqr0000gn/T/qiime2/abcdef/data/d6e36ee0-da28-4588-bc05-68643a35716c/data/P01-07G-M4-SHAM-Feces-R1-F7R15_S55_L001_R1_001.fastq.gz /var/folders/kh/zt2dzkrx2x7df59wctc6jhqr0000gn/T/qiime2/abcdef/data/d6e36ee0-da28-4588-bc05-68643a35716c/data/P01-07G-M4-SHAM-Feces-R1-F7R15_S55_L001_R2_001.fastq.gz\ \ This is cutadapt 4.2 with Python 3.8.16\ Command line parameters: --cores 3 --error-rate 0.1 --times 1 --overlap 3 --minimum-length 1 -q 0,0 --quality-base 33 -o /var/folders/kh/zt2dzkrx2x7df59wctc6jhqr0000gn/T/q2-CasavaOneEightSingleLanePerSampleDirFmt-40l92u2s/P01-07G-M4-SHAM-Feces-R1-F7R15_S55_L001_R1_001.fastq.gz -p /var/folders/kh/zt2dzkrx2x7df59wctc6jhqr0000gn/T/q2-CasavaOneEightSingleLanePerSampleDirFmt-40l92u2s/P01-07G-M4-SHAM-Feces-R1-F7R15_S55_L001_R2_001.fastq.gz --front GTGCCAGCMGCCGCGGTAA -G GGACTACHVGGGTWTCTAAT /var/folders/kh/zt2dzkrx2x7df59wctc6jhqr0000gn/T/qiime2/abcdef/data/d6e36ee0-da28-4588-bc05-68643a35716c/data/P01-07G-M4-SHAM-Feces-R1-F7R15_S55_L001_R1_001.fastq.gz /var/folders/kh/zt2dzkrx2x7df59wctc6jhqr0000gn/T/qiime2/abcdef/data/d6e36ee0-da28-4588-bc05-68643a35716c/data/P01-07G-M4-SHAM-Feces-R1-F7R15_S55_L001_R2_001.fastq.gz\ Processing paired-end reads on 3 cores ...\ [8<----------] 00:00:01 56,994 reads @ 18.5 \'b5s/read; 3.25 M reads/minu[8=----------] 00:00:02 128,227 reads @ 16.3 \'b5s/read; 3.68 M reads/minu[ 8<---------] 00:00:03 199,459 reads @ 15.9 \'b5s/read; 3.77 M reads/minu[ 8=---------] 00:00:04 270,686 reads @ 16.0 \'b5s/read; 3.75 M reads/minu[ 8<--------] 00:00:05 341,918 reads @ 15.5 \'b5s/read; 3.86 M reads/minuDone 00:00:06 388,678 reads @ 16.6 \'b5s/read; 3.61 M reads/minute\ Finished in 6.479 s (16.670 \'b5s/read; 3.60 M reads/minute).\ \ === Summary ===\ \ Total read pairs processed: 388,678\ Read 1 with adapter: 387,629 (99.7%)\ Read 2 with adapter: 385,468 (99.2%)\ \ == Read fate breakdown ==\ Pairs that were too short: 0 (0.0%)\ Pairs written (passing filters): 388,678 (100.0%)\ \ Total basepairs processed: 195,116,356 bp\ Read 1: 97,558,178 bp\ Read 2: 97,558,178 bp\ Quality-trimmed: 0 bp (0.0%)\ Read 1: 0 bp\ Read 2: 0 bp\ Total written (filtered): 178,496,674 bp (91.5%)\ Read 1: 89,420,770 bp\ Read 2: 89,075,904 bp\ \ === First read: Adapter 1 ===\ \ Sequence: GTGCCAGCMGCCGCGGTAA; Type: regular 5'; Length: 19; Trimmed: 387629 times\ \ Minimum overlap: 3\ No. of allowed errors:\ 1-9 bp: 0; 10-19 bp: 1\ \ Overview of removed sequences\ length count expect max.err error counts\ 3 2 6073.1 0 2\ 5 1 379.6 0 1\ 15 2 0.0 1 0 2\ 17 8 0.0 1 7 1\ 18 12 0.0 1 6 6\ 19 110 0.0 1 54 56\ 20 3384 0.0 1 1005 2379\ 21 383185 0.0 1 360538 22647\ 22 920 0.0 1 192 728\ 23 3 0.0 1 2 1\ 24 1 0.0 1 1\ 27 1 0.0 1 1\ \ \ === Second read: Adapter 2 ===\ \ Sequence: GGACTACHVGGGTWTCTAAT; Type: regular 5'; Length: 20; Trimmed: 385468 times\ \ Minimum overlap: 3\ No. of allowed errors:\ 1-9 bp: 0; 10-19 bp: 1; 20 bp: 2\ \ Overview of removed sequences\ length count expect max.err error counts\ 3 37 6073.1 0 37\ 4 1 1518.3 0 1\ 10 1 0.4 1 0 1\ 14 2 0.0 1 0 2\ 15 4 0.0 1 2 2\ 16 1 0.0 1 1\ 17 6 0.0 1 3 3\ 18 5 0.0 1 2 3\ 19 20 0.0 1 8 10 2\ 20 291 0.0 2 67 39 185\ 21 2984 0.0 2 565 2332 87\ 22 380995 0.0 2 368291 10786 1918\ 23 971 0.0 2 281 645 45\ 24 5 0.0 2 2 0 3\ 25 3 0.0 2 1 0 2\ 27 2 0.0 2 2\ 28 1 0.0 2 1\ 29 1 0.0 2 1\ 30 1 0.0 2 1\ 35 1 0.0 2 1\ 53 1 0.0 2 0 0 1\ 54 2 0.0 2 1 1\ 55 2 0.0 2 0 0 2\ 56 1 0.0 2 0 0 1\ 57 4 0.0 2 0 3 1\ 58 2 0.0 2 1 0 1\ 59 2 0.0 2 0 1 1\ 60 12 0.0 2 5 5 2\ 61 17 0.0 2 3 5 9\ 62 29 0.0 2 4 9 16\ 63 48 0.0 2 10 12 26\ 64 13 0.0 2 1 5 7\ 65 3 0.0 2 0 0 3\ \ Command: cutadapt --cores 3 --error-rate 0.1 --times 1 --overlap 3 --minimum-length 1 -q 0,0 --quality-base 33 -o /var/folders/kh/zt2dzkrx2x7df59wctc6jhqr0000gn/T/q2-CasavaOneEightSingleLanePerSampleDirFmt-40l92u2s/P01-07H-M4-SHAM-Feces-R2-F7R16_S56_L001_R1_001.fastq.gz -p /var/folders/kh/zt2dzkrx2x7df59wctc6jhqr0000gn/T/q2-CasavaOneEightSingleLanePerSampleDirFmt-40l92u2s/P01-07H-M4-SHAM-Feces-R2-F7R16_S56_L001_R2_001.fastq.gz --front GTGCCAGCMGCCGCGGTAA -G GGACTACHVGGGTWTCTAAT /var/folders/kh/zt2dzkrx2x7df59wctc6jhqr0000gn/T/qiime2/abcdef/data/d6e36ee0-da28-4588-bc05-68643a35716c/data/P01-07H-M4-SHAM-Feces-R2-F7R16_S56_L001_R1_001.fastq.gz /var/folders/kh/zt2dzkrx2x7df59wctc6jhqr0000gn/T/qiime2/abcdef/data/d6e36ee0-da28-4588-bc05-68643a35716c/data/P01-07H-M4-SHAM-Feces-R2-F7R16_S56_L001_R2_001.fastq.gz\ \ This is cutadapt 4.2 with Python 3.8.16\ Command line parameters: --cores 3 --error-rate 0.1 --times 1 --overlap 3 --minimum-length 1 -q 0,0 --quality-base 33 -o /var/folders/kh/zt2dzkrx2x7df59wctc6jhqr0000gn/T/q2-CasavaOneEightSingleLanePerSampleDirFmt-40l92u2s/P01-07H-M4-SHAM-Feces-R2-F7R16_S56_L001_R1_001.fastq.gz -p /var/folders/kh/zt2dzkrx2x7df59wctc6jhqr0000gn/T/q2-CasavaOneEightSingleLanePerSampleDirFmt-40l92u2s/P01-07H-M4-SHAM-Feces-R2-F7R16_S56_L001_R2_001.fastq.gz --front GTGCCAGCMGCCGCGGTAA -G GGACTACHVGGGTWTCTAAT /var/folders/kh/zt2dzkrx2x7df59wctc6jhqr0000gn/T/qiime2/abcdef/data/d6e36ee0-da28-4588-bc05-68643a35716c/data/P01-07H-M4-SHAM-Feces-R2-F7R16_S56_L001_R1_001.fastq.gz /var/folders/kh/zt2dzkrx2x7df59wctc6jhqr0000gn/T/qiime2/abcdef/data/d6e36ee0-da28-4588-bc05-68643a35716c/data/P01-07H-M4-SHAM-Feces-R2-F7R16_S56_L001_R2_001.fastq.gz\ Processing paired-end reads on 3 cores ...\ [8<----------] 00:00:01 64,115 reads @ 17.1 \'b5s/read; 3.50 M reads/minu[8=----------] 00:00:02 142,464 reads @ 15.3 \'b5s/read; 3.92 M reads/minu[ 8<---------] 00:00:03 213,696 reads @ 15.5 \'b5s/read; 3.88 M reads/minu[ 8=---------] 00:00:04 284,926 reads @ 15.6 \'b5s/read; 3.84 M reads/minu[ 8<--------] 00:00:05 356,156 reads @ 16.8 \'b5s/read; 3.58 M reads/minuDone 00:00:06 411,159 reads @ 16.4 \'b5s/read; 3.66 M reads/minute\ Finished in 6.760 s (16.440 \'b5s/read; 3.65 M reads/minute).\ \ === Summary ===\ \ Total read pairs processed: 411,159\ Read 1 with adapter: 410,072 (99.7%)\ Read 2 with adapter: 407,123 (99.0%)\ \ == Read fate breakdown ==\ Pairs that were too short: 0 (0.0%)\ Pairs written (passing filters): 411,159 (100.0%)\ \ Total basepairs processed: 206,401,818 bp\ Read 1: 103,200,909 bp\ Read 2: 103,200,909 bp\ Quality-trimmed: 0 bp (0.0%)\ Read 1: 0 bp\ Read 2: 0 bp\ Total written (filtered): 188,434,355 bp (91.3%)\ Read 1: 94,592,256 bp\ Read 2: 93,842,099 bp\ \ === First read: Adapter 1 ===\ \ Sequence: GTGCCAGCMGCCGCGGTAA; Type: regular 5'; Length: 19; Trimmed: 410072 times\ \ Minimum overlap: 3\ No. of allowed errors:\ 1-9 bp: 0; 10-19 bp: 1\ \ Overview of removed sequences\ length count expect max.err error counts\ 3 1 6424.4 0 1\ 6 1 100.4 0 1\ 12 1 0.0 1 1\ 13 1 0.0 1 0 1\ 15 2 0.0 1 2\ 17 5 0.0 1 3 2\ 18 16 0.0 1 9 7\ 19 108 0.0 1 50 58\ 20 3533 0.0 1 966 2567\ 21 405386 0.0 1 381524 23862\ 22 1016 0.0 1 239 777\ 23 2 0.0 1 2\ \ \ === Second read: Adapter 2 ===\ \ Sequence: GGACTACHVGGGTWTCTAAT; Type: regular 5'; Length: 20; Trimmed: 407123 times\ \ Minimum overlap: 3\ No. of allowed errors:\ 1-9 bp: 0; 10-19 bp: 1; 20 bp: 2\ \ Overview of removed sequences\ length count expect max.err error counts\ 3 59 6424.4 0 59\ 4 23 1606.1 0 23\ 13 1 0.0 1 1\ 15 3 0.0 1 1 2\ 18 4 0.0 1 1 3\ 19 6 0.0 1 4 2\ 20 111 0.0 2 73 20 18\ 21 425 0.0 2 158 47 220\ 22 3578 0.0 2 738 2686 154\ 23 401973 0.0 2 388543 11301 2129\ 24 918 0.0 2 307 583 28\ 25 4 0.0 2 0 0 4\ 26 1 0.0 2 0 0 1\ 27 1 0.0 2 0 0 1\ 28 2 0.0 2 1 0 1\ 29 1 0.0 2 1\ 30 1 0.0 2 1\ 60 1 0.0 2 0 0 1\ 62 2 0.0 2 0 1 1\ 63 3 0.0 2 0 0 3\ 64 6 0.0 2 0 0 6\ \ Command: cutadapt --cores 3 --error-rate 0.1 --times 1 --overlap 3 --minimum-length 1 -q 0,0 --quality-base 33 -o /var/folders/kh/zt2dzkrx2x7df59wctc6jhqr0000gn/T/q2-CasavaOneEightSingleLanePerSampleDirFmt-40l92u2s/P01-08A-M5-MI-Feces-R1-F8R9_S57_L001_R1_001.fastq.gz -p /var/folders/kh/zt2dzkrx2x7df59wctc6jhqr0000gn/T/q2-CasavaOneEightSingleLanePerSampleDirFmt-40l92u2s/P01-08A-M5-MI-Feces-R1-F8R9_S57_L001_R2_001.fastq.gz --front GTGCCAGCMGCCGCGGTAA -G GGACTACHVGGGTWTCTAAT /var/folders/kh/zt2dzkrx2x7df59wctc6jhqr0000gn/T/qiime2/abcdef/data/d6e36ee0-da28-4588-bc05-68643a35716c/data/P01-08A-M5-MI-Feces-R1-F8R9_S57_L001_R1_001.fastq.gz /var/folders/kh/zt2dzkrx2x7df59wctc6jhqr0000gn/T/qiime2/abcdef/data/d6e36ee0-da28-4588-bc05-68643a35716c/data/P01-08A-M5-MI-Feces-R1-F8R9_S57_L001_R2_001.fastq.gz\ \ This is cutadapt 4.2 with Python 3.8.16\ Command line parameters: --cores 3 --error-rate 0.1 --times 1 --overlap 3 --minimum-length 1 -q 0,0 --quality-base 33 -o /var/folders/kh/zt2dzkrx2x7df59wctc6jhqr0000gn/T/q2-CasavaOneEightSingleLanePerSampleDirFmt-40l92u2s/P01-08A-M5-MI-Feces-R1-F8R9_S57_L001_R1_001.fastq.gz -p /var/folders/kh/zt2dzkrx2x7df59wctc6jhqr0000gn/T/q2-CasavaOneEightSingleLanePerSampleDirFmt-40l92u2s/P01-08A-M5-MI-Feces-R1-F8R9_S57_L001_R2_001.fastq.gz --front GTGCCAGCMGCCGCGGTAA -G GGACTACHVGGGTWTCTAAT /var/folders/kh/zt2dzkrx2x7df59wctc6jhqr0000gn/T/qiime2/abcdef/data/d6e36ee0-da28-4588-bc05-68643a35716c/data/P01-08A-M5-MI-Feces-R1-F8R9_S57_L001_R1_001.fastq.gz /var/folders/kh/zt2dzkrx2x7df59wctc6jhqr0000gn/T/qiime2/abcdef/data/d6e36ee0-da28-4588-bc05-68643a35716c/data/P01-08A-M5-MI-Feces-R1-F8R9_S57_L001_R2_001.fastq.gz\ Processing paired-end reads on 3 cores ...\ [8<----------] 00:00:01 56,987 reads @ 17.9 \'b5s/read; 3.35 M reads/minuDone 00:00:01 94,349 reads @ 17.7 \'b5s/read; 3.39 M reads/minute\ Finished in 1.693 s (17.943 \'b5s/read; 3.34 M reads/minute).\ \ === Summary ===\ \ Total read pairs processed: 94,349\ Read 1 with adapter: 94,079 (99.7%)\ Read 2 with adapter: 93,289 (98.9%)\ \ == Read fate breakdown ==\ Pairs that were too short: 0 (0.0%)\ Pairs written (passing filters): 94,349 (100.0%)\ \ Total basepairs processed: 47,363,198 bp\ Read 1: 23,681,599 bp\ Read 2: 23,681,599 bp\ Quality-trimmed: 0 bp (0.0%)\ Read 1: 0 bp\ Read 2: 0 bp\ Total written (filtered): 43,428,419 bp (91.7%)\ Read 1: 21,613,056 bp\ Read 2: 21,815,363 bp\ \ === First read: Adapter 1 ===\ \ Sequence: GTGCCAGCMGCCGCGGTAA; Type: regular 5'; Length: 19; Trimmed: 94079 times\ \ Minimum overlap: 3\ No. of allowed errors:\ 1-9 bp: 0; 10-19 bp: 1\ \ Overview of removed sequences\ length count expect max.err error counts\ 3 5 1474.2 0 5\ 4 1 368.6 0 1\ 17 1 0.0 1 1\ 18 4 0.0 1 3 1\ 19 8 0.0 1 4 4\ 20 46 0.0 1 20 26\ 21 1139 0.0 1 355 784\ 22 92681 0.0 1 87367 5314\ 23 194 0.0 1 46 148\ \ \ === Second read: Adapter 2 ===\ \ Sequence: GGACTACHVGGGTWTCTAAT; Type: regular 5'; Length: 20; Trimmed: 93289 times\ \ Minimum overlap: 3\ No. of allowed errors:\ 1-9 bp: 0; 10-19 bp: 1; 20 bp: 2\ \ Overview of removed sequences\ length count expect max.err error counts\ 3 7 1474.2 0 7\ 11 1 0.0 1 0 1\ 14 1 0.0 1 1\ 15 1 0.0 1 1\ 16 1 0.0 1 0 1\ 17 8 0.0 1 2 6\ 18 74 0.0 1 4 14 56\ 19 997 0.0 1 182 786 29\ 20 91962 0.0 2 88618 2853 491\ 21 163 0.0 2 38 115 10\ 22 12 0.0 2 5 3 4\ 23 24 0.0 2 12 9 3\ 53 1 0.0 2 0 0 1\ 57 1 0.0 2 0 0 1\ 58 3 0.0 2 0 1 2\ 59 7 0.0 2 0 1 6\ 60 14 0.0 2 1 2 11\ 61 12 0.0 2 0 4 8\ \ Command: cutadapt --cores 3 --error-rate 0.1 --times 1 --overlap 3 --minimum-length 1 -q 0,0 --quality-base 33 -o /var/folders/kh/zt2dzkrx2x7df59wctc6jhqr0000gn/T/q2-CasavaOneEightSingleLanePerSampleDirFmt-40l92u2s/P01-08B-M5-MI-Feces-R2-F8R10_S58_L001_R1_001.fastq.gz -p /var/folders/kh/zt2dzkrx2x7df59wctc6jhqr0000gn/T/q2-CasavaOneEightSingleLanePerSampleDirFmt-40l92u2s/P01-08B-M5-MI-Feces-R2-F8R10_S58_L001_R2_001.fastq.gz --front GTGCCAGCMGCCGCGGTAA -G GGACTACHVGGGTWTCTAAT /var/folders/kh/zt2dzkrx2x7df59wctc6jhqr0000gn/T/qiime2/abcdef/data/d6e36ee0-da28-4588-bc05-68643a35716c/data/P01-08B-M5-MI-Feces-R2-F8R10_S58_L001_R1_001.fastq.gz /var/folders/kh/zt2dzkrx2x7df59wctc6jhqr0000gn/T/qiime2/abcdef/data/d6e36ee0-da28-4588-bc05-68643a35716c/data/P01-08B-M5-MI-Feces-R2-F8R10_S58_L001_R2_001.fastq.gz\ \ This is cutadapt 4.2 with Python 3.8.16\ Command line parameters: --cores 3 --error-rate 0.1 --times 1 --overlap 3 --minimum-length 1 -q 0,0 --quality-base 33 -o /var/folders/kh/zt2dzkrx2x7df59wctc6jhqr0000gn/T/q2-CasavaOneEightSingleLanePerSampleDirFmt-40l92u2s/P01-08B-M5-MI-Feces-R2-F8R10_S58_L001_R1_001.fastq.gz -p /var/folders/kh/zt2dzkrx2x7df59wctc6jhqr0000gn/T/q2-CasavaOneEightSingleLanePerSampleDirFmt-40l92u2s/P01-08B-M5-MI-Feces-R2-F8R10_S58_L001_R2_001.fastq.gz --front GTGCCAGCMGCCGCGGTAA -G GGACTACHVGGGTWTCTAAT /var/folders/kh/zt2dzkrx2x7df59wctc6jhqr0000gn/T/qiime2/abcdef/data/d6e36ee0-da28-4588-bc05-68643a35716c/data/P01-08B-M5-MI-Feces-R2-F8R10_S58_L001_R1_001.fastq.gz /var/folders/kh/zt2dzkrx2x7df59wctc6jhqr0000gn/T/qiime2/abcdef/data/d6e36ee0-da28-4588-bc05-68643a35716c/data/P01-08B-M5-MI-Feces-R2-F8R10_S58_L001_R2_001.fastq.gz\ Processing paired-end reads on 3 cores ...\ [8<----------] 00:00:01 56,989 reads @ 18.1 \'b5s/read; 3.32 M reads/minu[8=----------] 00:00:02 135,348 reads @ 14.0 \'b5s/read; 4.30 M reads/minu[ 8<---------] 00:00:03 206,580 reads @ 15.2 \'b5s/read; 3.95 M reads/minu[ 8=---------] 00:00:04 277,813 reads @ 14.5 \'b5s/read; 4.12 M reads/minu[ 8<--------] 00:00:05 349,047 reads @ 15.3 \'b5s/read; 3.93 M reads/minu[ 8=--------] 00:00:06 420,271 reads @ 14.8 \'b5s/read; 4.06 M reads/minu[ 8<-------] 00:00:07 491,503 reads @ 16.7 \'b5s/read; 3.60 M reads/minu[ 8=-------] 00:00:08 557,898 reads @ 16.6 \'b5s/read; 3.62 M reads/minuDone 00:00:08 557,898 reads @ 15.6 \'b5s/read; 3.85 M reads/minute\ Finished in 8.722 s (15.633 \'b5s/read; 3.84 M reads/minute).\ \ === Summary ===\ \ Total read pairs processed: 557,898\ Read 1 with adapter: 556,164 (99.7%)\ Read 2 with adapter: 548,429 (98.3%)\ \ == Read fate breakdown ==\ Pairs that were too short: 0 (0.0%)\ Pairs written (passing filters): 557,898 (100.0%)\ \ Total basepairs processed: 280,064,796 bp\ Read 1: 140,032,398 bp\ Read 2: 140,032,398 bp\ Quality-trimmed: 0 bp (0.0%)\ Read 1: 0 bp\ Read 2: 0 bp\ Total written (filtered): 256,295,246 bp (91.5%)\ Read 1: 127,803,456 bp\ Read 2: 128,491,790 bp\ \ === First read: Adapter 1 ===\ \ Sequence: GTGCCAGCMGCCGCGGTAA; Type: regular 5'; Length: 19; Trimmed: 556164 times\ \ Minimum overlap: 3\ No. of allowed errors:\ 1-9 bp: 0; 10-19 bp: 1\ \ Overview of removed sequences\ length count expect max.err error counts\ 3 39 8717.2 0 39\ 13 1 0.0 1 0 1\ 15 3 0.0 1 2 1\ 17 4 0.0 1 3 1\ 18 10 0.0 1 5 5\ 19 36 0.0 1 18 18\ 20 273 0.0 1 141 132\ 21 6201 0.0 1 1803 4398\ 22 548583 0.0 1 516877 31706\ 23 1011 0.0 1 235 776\ 24 1 0.0 1 1\ 25 1 0.0 1 1\ 26 1 0.0 1 1\ \ \ === Second read: Adapter 2 ===\ \ Sequence: GGACTACHVGGGTWTCTAAT; Type: regular 5'; Length: 20; Trimmed: 548429 times\ \ Minimum overlap: 3\ No. of allowed errors:\ 1-9 bp: 0; 10-19 bp: 1; 20 bp: 2\ \ Overview of removed sequences\ length count expect max.err error counts\ 3 43 8717.2 0 43\ 4 4 2179.3 0 4\ 11 1 0.1 1 0 1\ 12 3 0.0 1 3\ 13 3 0.0 1 2 1\ 14 4 0.0 1 0 4\ 15 24 0.0 1 16 8\ 16 19 0.0 1 6 13\ 17 36 0.0 1 20 16\ 18 77 0.0 1 33 41 3\ 19 830 0.0 1 95 125 610\ 20 7447 0.0 2 1093 6051 303\ 21 538108 0.0 2 514354 19574 4180\ 22 868 0.0 2 224 577 67\ 23 118 0.0 2 39 31 48\ 24 1 0.0 2 1\ 25 1 0.0 2 1\ 46 1 0.0 2 0 0 1\ 53 2 0.0 2 0 2\ 54 2 0.0 2 0 0 2\ 55 6 0.0 2 0 1 5\ 56 5 0.0 2 0 2 3\ 57 15 0.0 2 2 4 9\ 58 51 0.0 2 9 20 22\ 59 129 0.0 2 31 34 64\ 60 199 0.0 2 48 71 80\ 61 222 0.0 2 36 88 98\ 62 185 0.0 2 24 67 94\ 63 24 0.0 2 2 11 11\ 64 1 0.0 2 1\ \ Command: cutadapt --cores 3 --error-rate 0.1 --times 1 --overlap 3 --minimum-length 1 -q 0,0 --quality-base 33 -o /var/folders/kh/zt2dzkrx2x7df59wctc6jhqr0000gn/T/q2-CasavaOneEightSingleLanePerSampleDirFmt-40l92u2s/P01-08C-M6-MI-Feces-R1-F8R11_S59_L001_R1_001.fastq.gz -p /var/folders/kh/zt2dzkrx2x7df59wctc6jhqr0000gn/T/q2-CasavaOneEightSingleLanePerSampleDirFmt-40l92u2s/P01-08C-M6-MI-Feces-R1-F8R11_S59_L001_R2_001.fastq.gz --front GTGCCAGCMGCCGCGGTAA -G GGACTACHVGGGTWTCTAAT /var/folders/kh/zt2dzkrx2x7df59wctc6jhqr0000gn/T/qiime2/abcdef/data/d6e36ee0-da28-4588-bc05-68643a35716c/data/P01-08C-M6-MI-Feces-R1-F8R11_S59_L001_R1_001.fastq.gz /var/folders/kh/zt2dzkrx2x7df59wctc6jhqr0000gn/T/qiime2/abcdef/data/d6e36ee0-da28-4588-bc05-68643a35716c/data/P01-08C-M6-MI-Feces-R1-F8R11_S59_L001_R2_001.fastq.gz\ \ This is cutadapt 4.2 with Python 3.8.16\ Command line parameters: --cores 3 --error-rate 0.1 --times 1 --overlap 3 --minimum-length 1 -q 0,0 --quality-base 33 -o /var/folders/kh/zt2dzkrx2x7df59wctc6jhqr0000gn/T/q2-CasavaOneEightSingleLanePerSampleDirFmt-40l92u2s/P01-08C-M6-MI-Feces-R1-F8R11_S59_L001_R1_001.fastq.gz -p /var/folders/kh/zt2dzkrx2x7df59wctc6jhqr0000gn/T/q2-CasavaOneEightSingleLanePerSampleDirFmt-40l92u2s/P01-08C-M6-MI-Feces-R1-F8R11_S59_L001_R2_001.fastq.gz --front GTGCCAGCMGCCGCGGTAA -G GGACTACHVGGGTWTCTAAT /var/folders/kh/zt2dzkrx2x7df59wctc6jhqr0000gn/T/qiime2/abcdef/data/d6e36ee0-da28-4588-bc05-68643a35716c/data/P01-08C-M6-MI-Feces-R1-F8R11_S59_L001_R1_001.fastq.gz /var/folders/kh/zt2dzkrx2x7df59wctc6jhqr0000gn/T/qiime2/abcdef/data/d6e36ee0-da28-4588-bc05-68643a35716c/data/P01-08C-M6-MI-Feces-R1-F8R11_S59_L001_R2_001.fastq.gz\ Processing paired-end reads on 3 cores ...\ [8<----------] 00:00:01 56,994 reads @ 18.0 \'b5s/read; 3.32 M reads/minu[8=----------] 00:00:02 128,221 reads @ 14.6 \'b5s/read; 4.11 M reads/minu[ 8<---------] 00:00:03 199,459 reads @ 14.1 \'b5s/read; 4.25 M reads/minu[ 8=---------] 00:00:04 270,692 reads @ 14.6 \'b5s/read; 4.10 M reads/minu[ 8<--------] 00:00:05 341,918 reads @ 15.2 \'b5s/read; 3.95 M reads/minu[ 8=--------] 00:00:06 413,158 reads @ 15.2 \'b5s/read; 3.94 M reads/minu[ 8<-------] 00:00:07 484,389 reads @ 14.4 \'b5s/read; 4.17 M reads/minu[ 8=-------] 00:00:08 555,613 reads @ 15.7 \'b5s/read; 3.83 M reads/minu[ 8<------] 00:00:09 626,847 reads @ 14.4 \'b5s/read; 4.18 M reads/minu[ 8=------] 00:00:10 698,078 reads @ 14.6 \'b5s/read; 4.10 M reads/minu[ 8<-----] 00:00:11 769,309 reads @ 14.3 \'b5s/read; 4.19 M reads/minu[ 8=-----] 00:00:12 838,720 reads @ 15.3 \'b5s/read; 3.91 M reads/minuDone 00:00:12 838,720 reads @ 15.1 \'b5s/read; 3.98 M reads/minute\ Finished in 12.667 s (15.103 \'b5s/read; 3.97 M reads/minute).\ \ === Summary ===\ \ Total read pairs processed: 838,720\ Read 1 with adapter: 836,308 (99.7%)\ Read 2 with adapter: 830,727 (99.0%)\ \ == Read fate breakdown ==\ Pairs that were too short: 0 (0.0%)\ Pairs written (passing filters): 838,720 (100.0%)\ \ Total basepairs processed: 421,037,440 bp\ Read 1: 210,518,720 bp\ Read 2: 210,518,720 bp\ Quality-trimmed: 0 bp (0.0%)\ Read 1: 0 bp\ Read 2: 0 bp\ Total written (filtered): 384,376,942 bp (91.3%)\ Read 1: 192,130,078 bp\ Read 2: 192,246,864 bp\ \ === First read: Adapter 1 ===\ \ Sequence: GTGCCAGCMGCCGCGGTAA; Type: regular 5'; Length: 19; Trimmed: 836308 times\ \ Minimum overlap: 3\ No. of allowed errors:\ 1-9 bp: 0; 10-19 bp: 1\ \ Overview of removed sequences\ length count expect max.err error counts\ 3 52 13105.0 0 52\ 13 1 0.0 1 0 1\ 14 1 0.0 1 0 1\ 15 1 0.0 1 0 1\ 16 4 0.0 1 2 2\ 17 6 0.0 1 4 2\ 18 21 0.0 1 11 10\ 19 62 0.0 1 31 31\ 20 413 0.0 1 206 207\ 21 9558 0.0 1 2762 6796\ 22 824610 0.0 1 778189 46421\ 23 1575 0.0 1 412 1163\ 24 2 0.0 1 2\ 25 1 0.0 1 1\ 26 1 0.0 1 1\ \ \ === Second read: Adapter 2 ===\ \ Sequence: GGACTACHVGGGTWTCTAAT; Type: regular 5'; Length: 20; Trimmed: 830727 times\ \ Minimum overlap: 3\ No. of allowed errors:\ 1-9 bp: 0; 10-19 bp: 1; 20 bp: 2\ \ Overview of removed sequences\ length count expect max.err error counts\ 3 23 13105.0 0 23\ 4 5 3276.2 0 5\ 12 2 0.0 1 2\ 16 2 0.0 1 0 2\ 17 1 0.0 1 0 1\ 18 9 0.0 1 2 7\ 19 17 0.0 1 7 8 2\ 20 635 0.0 2 279 64 292\ 21 7587 0.0 2 912 6360 315\ 22 819742 0.0 2 788270 26197 5275\ 23 2628 0.0 2 767 1720 141\ 24 6 0.0 2 0 2 4\ 48 1 0.0 2 0 0 1\ 49 1 0.0 2 0 1\ 51 1 0.0 2 0 0 1\ 54 1 0.0 2 0 0 1\ 55 2 0.0 2 0 1 1\ 57 1 0.0 2 0 0 1\ 58 3 0.0 2 0 1 2\ 59 3 0.0 2 0 1 2\ 60 5 0.0 2 3 0 2\ 61 13 0.0 2 0 4 9\ 62 12 0.0 2 1 2 9\ 63 17 0.0 2 1 6 10\ 64 8 0.0 2 0 3 5\ 65 2 0.0 2 0 2\ \ Command: cutadapt --cores 3 --error-rate 0.1 --times 1 --overlap 3 --minimum-length 1 -q 0,0 --quality-base 33 -o /var/folders/kh/zt2dzkrx2x7df59wctc6jhqr0000gn/T/q2-CasavaOneEightSingleLanePerSampleDirFmt-40l92u2s/P01-08D-M6-MI-Feces-R2-F8R12_S60_L001_R1_001.fastq.gz -p /var/folders/kh/zt2dzkrx2x7df59wctc6jhqr0000gn/T/q2-CasavaOneEightSingleLanePerSampleDirFmt-40l92u2s/P01-08D-M6-MI-Feces-R2-F8R12_S60_L001_R2_001.fastq.gz --front GTGCCAGCMGCCGCGGTAA -G GGACTACHVGGGTWTCTAAT /var/folders/kh/zt2dzkrx2x7df59wctc6jhqr0000gn/T/qiime2/abcdef/data/d6e36ee0-da28-4588-bc05-68643a35716c/data/P01-08D-M6-MI-Feces-R2-F8R12_S60_L001_R1_001.fastq.gz /var/folders/kh/zt2dzkrx2x7df59wctc6jhqr0000gn/T/qiime2/abcdef/data/d6e36ee0-da28-4588-bc05-68643a35716c/data/P01-08D-M6-MI-Feces-R2-F8R12_S60_L001_R2_001.fastq.gz\ \ This is cutadapt 4.2 with Python 3.8.16\ Command line parameters: --cores 3 --error-rate 0.1 --times 1 --overlap 3 --minimum-length 1 -q 0,0 --quality-base 33 -o /var/folders/kh/zt2dzkrx2x7df59wctc6jhqr0000gn/T/q2-CasavaOneEightSingleLanePerSampleDirFmt-40l92u2s/P01-08D-M6-MI-Feces-R2-F8R12_S60_L001_R1_001.fastq.gz -p /var/folders/kh/zt2dzkrx2x7df59wctc6jhqr0000gn/T/q2-CasavaOneEightSingleLanePerSampleDirFmt-40l92u2s/P01-08D-M6-MI-Feces-R2-F8R12_S60_L001_R2_001.fastq.gz --front GTGCCAGCMGCCGCGGTAA -G GGACTACHVGGGTWTCTAAT /var/folders/kh/zt2dzkrx2x7df59wctc6jhqr0000gn/T/qiime2/abcdef/data/d6e36ee0-da28-4588-bc05-68643a35716c/data/P01-08D-M6-MI-Feces-R2-F8R12_S60_L001_R1_001.fastq.gz /var/folders/kh/zt2dzkrx2x7df59wctc6jhqr0000gn/T/qiime2/abcdef/data/d6e36ee0-da28-4588-bc05-68643a35716c/data/P01-08D-M6-MI-Feces-R2-F8R12_S60_L001_R2_001.fastq.gz\ Processing paired-end reads on 3 cores ...\ [8<----------] 00:00:01 56,991 reads @ 18.0 \'b5s/read; 3.33 M reads/minu[8=----------] 00:00:02 135,343 reads @ 13.0 \'b5s/read; 4.61 M reads/minu[ 8<---------] 00:00:03 199,459 reads @ 16.3 \'b5s/read; 3.67 M reads/minu[ 8=---------] 00:00:04 270,683 reads @ 14.4 \'b5s/read; 4.18 M reads/minu[ 8<--------] 00:00:05 341,920 reads @ 15.2 \'b5s/read; 3.93 M reads/minu[ 8=--------] 00:00:06 413,148 reads @ 14.3 \'b5s/read; 4.18 M reads/minuDone 00:00:07 460,259 reads @ 15.2 \'b5s/read; 3.94 M reads/minute\ Finished in 7.032 s (15.277 \'b5s/read; 3.93 M reads/minute).\ \ === Summary ===\ \ Total read pairs processed: 460,259\ Read 1 with adapter: 458,936 (99.7%)\ Read 2 with adapter: 453,561 (98.5%)\ \ == Read fate breakdown ==\ Pairs that were too short: 0 (0.0%)\ Pairs written (passing filters): 460,259 (100.0%)\ \ Total basepairs processed: 231,050,018 bp\ Read 1: 115,525,009 bp\ Read 2: 115,525,009 bp\ Quality-trimmed: 0 bp (0.0%)\ Read 1: 0 bp\ Read 2: 0 bp\ Total written (filtered): 210,529,595 bp (91.1%)\ Read 1: 105,433,934 bp\ Read 2: 105,095,661 bp\ \ === First read: Adapter 1 ===\ \ Sequence: GTGCCAGCMGCCGCGGTAA; Type: regular 5'; Length: 19; Trimmed: 458936 times\ \ Minimum overlap: 3\ No. of allowed errors:\ 1-9 bp: 0; 10-19 bp: 1\ \ Overview of removed sequences\ length count expect max.err error counts\ 3 26 7191.5 0 26\ 4 1 1797.9 0 1\ 15 1 0.0 1 0 1\ 16 3 0.0 1 2 1\ 17 2 0.0 1 1 1\ 18 14 0.0 1 7 7\ 19 37 0.0 1 17 20\ 20 224 0.0 1 111 113\ 21 5202 0.0 1 1563 3639\ 22 452581 0.0 1 426820 25761\ 23 843 0.0 1 212 631\ 24 2 0.0 1 2\ \ \ === Second read: Adapter 2 ===\ \ Sequence: GGACTACHVGGGTWTCTAAT; Type: regular 5'; Length: 20; Trimmed: 453561 times\ \ Minimum overlap: 3\ No. of allowed errors:\ 1-9 bp: 0; 10-19 bp: 1; 20 bp: 2\ \ Overview of removed sequences\ length count expect max.err error counts\ 3 96 7191.5 0 96\ 4 11 1797.9 0 11\ 7 1 28.1 0 1\ 15 4 0.0 1 1 3\ 16 2 0.0 1 1 1\ 17 2 0.0 1 1 1\ 18 5 0.0 1 2 3\ 19 10 0.0 1 2 7 1\ 20 306 0.0 2 226 49 31\ 21 511 0.0 2 224 86 201\ 22 3951 0.0 2 1114 2643 194\ 23 447536 0.0 2 427892 15920 3724\ 24 1010 0.0 2 332 649 29\ 28 1 0.0 2 1\ 49 1 0.0 2 0 0 1\ 51 1 0.0 2 0 0 1\ 56 2 0.0 2 2\ 57 1 0.0 2 0 0 1\ 58 3 0.0 2 0 2 1\ 59 4 0.0 2 0 1 3\ 60 4 0.0 2 1 0 3\ 61 7 0.0 2 2 0 5\ 62 11 0.0 2 1 2 8\ 63 24 0.0 2 2 9 13\ 64 54 0.0 2 9 13 32\ 65 2 0.0 2 0 1 1\ 108 1 0.0 2 0 0 1\ \ Command: cutadapt --cores 3 --error-rate 0.1 --times 1 --overlap 3 --minimum-length 1 -q 0,0 --quality-base 33 -o /var/folders/kh/zt2dzkrx2x7df59wctc6jhqr0000gn/T/q2-CasavaOneEightSingleLanePerSampleDirFmt-40l92u2s/P01-08E-M7-MI-Feces-R1-F8R13_S61_L001_R1_001.fastq.gz -p /var/folders/kh/zt2dzkrx2x7df59wctc6jhqr0000gn/T/q2-CasavaOneEightSingleLanePerSampleDirFmt-40l92u2s/P01-08E-M7-MI-Feces-R1-F8R13_S61_L001_R2_001.fastq.gz --front GTGCCAGCMGCCGCGGTAA -G GGACTACHVGGGTWTCTAAT /var/folders/kh/zt2dzkrx2x7df59wctc6jhqr0000gn/T/qiime2/abcdef/data/d6e36ee0-da28-4588-bc05-68643a35716c/data/P01-08E-M7-MI-Feces-R1-F8R13_S61_L001_R1_001.fastq.gz /var/folders/kh/zt2dzkrx2x7df59wctc6jhqr0000gn/T/qiime2/abcdef/data/d6e36ee0-da28-4588-bc05-68643a35716c/data/P01-08E-M7-MI-Feces-R1-F8R13_S61_L001_R2_001.fastq.gz\ \ This is cutadapt 4.2 with Python 3.8.16\ Command line parameters: --cores 3 --error-rate 0.1 --times 1 --overlap 3 --minimum-length 1 -q 0,0 --quality-base 33 -o /var/folders/kh/zt2dzkrx2x7df59wctc6jhqr0000gn/T/q2-CasavaOneEightSingleLanePerSampleDirFmt-40l92u2s/P01-08E-M7-MI-Feces-R1-F8R13_S61_L001_R1_001.fastq.gz -p /var/folders/kh/zt2dzkrx2x7df59wctc6jhqr0000gn/T/q2-CasavaOneEightSingleLanePerSampleDirFmt-40l92u2s/P01-08E-M7-MI-Feces-R1-F8R13_S61_L001_R2_001.fastq.gz --front GTGCCAGCMGCCGCGGTAA -G GGACTACHVGGGTWTCTAAT /var/folders/kh/zt2dzkrx2x7df59wctc6jhqr0000gn/T/qiime2/abcdef/data/d6e36ee0-da28-4588-bc05-68643a35716c/data/P01-08E-M7-MI-Feces-R1-F8R13_S61_L001_R1_001.fastq.gz /var/folders/kh/zt2dzkrx2x7df59wctc6jhqr0000gn/T/qiime2/abcdef/data/d6e36ee0-da28-4588-bc05-68643a35716c/data/P01-08E-M7-MI-Feces-R1-F8R13_S61_L001_R2_001.fastq.gz\ Processing paired-end reads on 3 cores ...\ [8<----------] 00:00:01 64,124 reads @ 17.0 \'b5s/read; 3.54 M reads/minu[8=----------] 00:00:02 135,345 reads @ 14.3 \'b5s/read; 4.19 M reads/minu[ 8<---------] 00:00:03 206,589 reads @ 14.5 \'b5s/read; 4.15 M reads/minu[ 8=---------] 00:00:04 277,822 reads @ 15.2 \'b5s/read; 3.94 M reads/minu[ 8<--------] 00:00:05 349,054 reads @ 15.1 \'b5s/read; 3.99 M reads/minu[ 8=--------] 00:00:06 420,289 reads @ 15.3 \'b5s/read; 3.91 M reads/minu[ 8<-------] 00:00:07 491,516 reads @ 15.5 \'b5s/read; 3.86 M reads/minu[ 8=-------] 00:00:08 562,747 reads @ 15.7 \'b5s/read; 3.82 M reads/minu[ 8<------] 00:00:09 633,978 reads @ 15.0 \'b5s/read; 4.01 M reads/minu[ 8=------] 00:00:10 705,205 reads @ 15.5 \'b5s/read; 3.87 M reads/minu[ 8<-----] 00:00:11 776,437 reads @ 15.6 \'b5s/read; 3.84 M reads/minu[ 8=-----] 00:00:13 847,675 reads @ 15.5 \'b5s/read; 3.86 M reads/minu[ 8<----] 00:00:14 918,907 reads @ 15.4 \'b5s/read; 3.89 M reads/minu[ 8=----] 00:00:15 990,133 reads @ 15.2 \'b5s/read; 3.94 M reads/minu[ 8<---] 00:00:16 1,061,359 reads @ 15.8 \'b5s/read; 3.81 M reads/minu[ 8=---] 00:00:17 1,132,588 reads @ 15.6 \'b5s/read; 3.86 M reads/minu[ 8<--] 00:00:18 1,203,824 reads @ 15.8 \'b5s/read; 3.80 M reads/minu[ 8=--] 00:00:19 1,273,312 reads @ 15.5 \'b5s/read; 3.86 M reads/minuDone 00:00:19 1,280,432 reads @ 15.5 \'b5s/read; 3.88 M reads/minute\ Finished in 19.838 s (15.493 \'b5s/read; 3.87 M reads/minute).\ \ === Summary ===\ \ Total read pairs processed: 1,280,432\ Read 1 with adapter: 1,276,815 (99.7%)\ Read 2 with adapter: 1,269,366 (99.1%)\ \ == Read fate breakdown ==\ Pairs that were too short: 0 (0.0%)\ Pairs written (passing filters): 1,280,432 (100.0%)\ \ Total basepairs processed: 642,776,864 bp\ Read 1: 321,388,432 bp\ Read 2: 321,388,432 bp\ Quality-trimmed: 0 bp (0.0%)\ Read 1: 0 bp\ Read 2: 0 bp\ Total written (filtered): 589,314,123 bp (91.7%)\ Read 1: 293,313,834 bp\ Read 2: 296,000,289 bp\ \ === First read: Adapter 1 ===\ \ Sequence: GTGCCAGCMGCCGCGGTAA; Type: regular 5'; Length: 19; Trimmed: 1276815 times\ \ Minimum overlap: 3\ No. of allowed errors:\ 1-9 bp: 0; 10-19 bp: 1\ \ Overview of removed sequences\ length count expect max.err error counts\ 3 84 20006.8 0 84\ 4 3 5001.7 0 3\ 15 1 0.0 1 1\ 16 2 0.0 1 1 1\ 17 9 0.0 1 5 4\ 18 24 0.0 1 11 13\ 19 106 0.0 1 55 51\ 20 676 0.0 1 362 314\ 21 14206 0.0 1 4267 9939\ 22 1259384 0.0 1 1187819 71565\ 23 2306 0.0 1 609 1697\ 24 7 0.0 1 6 1\ 25 1 0.0 1 1\ 26 4 0.0 1 4\ 29 1 0.0 1 1\ 30 1 0.0 1 0 1\ \ \ === Second read: Adapter 2 ===\ \ Sequence: GGACTACHVGGGTWTCTAAT; Type: regular 5'; Length: 20; Trimmed: 1269366 times\ \ Minimum overlap: 3\ No. of allowed errors:\ 1-9 bp: 0; 10-19 bp: 1; 20 bp: 2\ \ Overview of removed sequences\ length count expect max.err error counts\ 3 25 20006.8 0 25\ 4 2 5001.7 0 2\ 11 1 0.3 1 1\ 12 3 0.1 1 3\ 13 5 0.0 1 2 3\ 14 3 0.0 1 2 1\ 15 22 0.0 1 20 2\ 16 13 0.0 1 4 9\ 17 40 0.0 1 22 18\ 18 668 0.0 1 37 100 531\ 19 11061 0.0 1 1358 9380 323\ 20 1254107 0.0 2 1210127 37625 6355\ 21 2692 0.0 2 669 1864 159\ 22 246 0.0 2 107 62 77\ 23 203 0.0 2 107 30 66\ 24 9 0.0 2 3 4 2\ 25 6 0.0 2 3 1 2\ 26 2 0.0 2 1 0 1\ 27 1 0.0 2 1\ 28 4 0.0 2 4\ 31 1 0.0 2 0 1\ 47 1 0.0 2 0 0 1\ 52 1 0.0 2 0 0 1\ 55 1 0.0 2 1\ 56 1 0.0 2 0 1\ 57 3 0.0 2 0 0 3\ 58 17 0.0 2 2 4 11\ 59 33 0.0 2 6 13 14\ 60 73 0.0 2 10 24 39\ 61 99 0.0 2 10 30 59\ 62 18 0.0 2 1 5 12\ 63 5 0.0 2 2 0 3\ \ Command: cutadapt --cores 3 --error-rate 0.1 --times 1 --overlap 3 --minimum-length 1 -q 0,0 --quality-base 33 -o /var/folders/kh/zt2dzkrx2x7df59wctc6jhqr0000gn/T/q2-CasavaOneEightSingleLanePerSampleDirFmt-40l92u2s/P01-08F-M7-MI-Feces-R2-F8R14_S62_L001_R1_001.fastq.gz -p /var/folders/kh/zt2dzkrx2x7df59wctc6jhqr0000gn/T/q2-CasavaOneEightSingleLanePerSampleDirFmt-40l92u2s/P01-08F-M7-MI-Feces-R2-F8R14_S62_L001_R2_001.fastq.gz --front GTGCCAGCMGCCGCGGTAA -G GGACTACHVGGGTWTCTAAT /var/folders/kh/zt2dzkrx2x7df59wctc6jhqr0000gn/T/qiime2/abcdef/data/d6e36ee0-da28-4588-bc05-68643a35716c/data/P01-08F-M7-MI-Feces-R2-F8R14_S62_L001_R1_001.fastq.gz /var/folders/kh/zt2dzkrx2x7df59wctc6jhqr0000gn/T/qiime2/abcdef/data/d6e36ee0-da28-4588-bc05-68643a35716c/data/P01-08F-M7-MI-Feces-R2-F8R14_S62_L001_R2_001.fastq.gz\ \ This is cutadapt 4.2 with Python 3.8.16\ Command line parameters: --cores 3 --error-rate 0.1 --times 1 --overlap 3 --minimum-length 1 -q 0,0 --quality-base 33 -o /var/folders/kh/zt2dzkrx2x7df59wctc6jhqr0000gn/T/q2-CasavaOneEightSingleLanePerSampleDirFmt-40l92u2s/P01-08F-M7-MI-Feces-R2-F8R14_S62_L001_R1_001.fastq.gz -p /var/folders/kh/zt2dzkrx2x7df59wctc6jhqr0000gn/T/q2-CasavaOneEightSingleLanePerSampleDirFmt-40l92u2s/P01-08F-M7-MI-Feces-R2-F8R14_S62_L001_R2_001.fastq.gz --front GTGCCAGCMGCCGCGGTAA -G GGACTACHVGGGTWTCTAAT /var/folders/kh/zt2dzkrx2x7df59wctc6jhqr0000gn/T/qiime2/abcdef/data/d6e36ee0-da28-4588-bc05-68643a35716c/data/P01-08F-M7-MI-Feces-R2-F8R14_S62_L001_R1_001.fastq.gz /var/folders/kh/zt2dzkrx2x7df59wctc6jhqr0000gn/T/qiime2/abcdef/data/d6e36ee0-da28-4588-bc05-68643a35716c/data/P01-08F-M7-MI-Feces-R2-F8R14_S62_L001_R2_001.fastq.gz\ Processing paired-end reads on 3 cores ...\ [8<----------] 00:00:01 56,991 reads @ 18.5 \'b5s/read; 3.24 M reads/minu[8=----------] 00:00:02 128,229 reads @ 16.3 \'b5s/read; 3.69 M reads/minu[ 8<---------] 00:00:03 199,454 reads @ 15.9 \'b5s/read; 3.77 M reads/minu[ 8=---------] 00:00:04 270,692 reads @ 16.1 \'b5s/read; 3.73 M reads/minu[ 8<--------] 00:00:05 341,923 reads @ 16.2 \'b5s/read; 3.70 M reads/minu[ 8=--------] 00:00:06 413,162 reads @ 16.3 \'b5s/read; 3.68 M reads/minu[ 8<-------] 00:00:07 484,379 reads @ 16.5 \'b5s/read; 3.63 M reads/minu[ 8=-------] 00:00:09 555,616 reads @ 16.2 \'b5s/read; 3.71 M reads/minu[ 8<------] 00:00:10 626,855 reads @ 16.7 \'b5s/read; 3.58 M reads/minu[ 8=------] 00:00:11 698,073 reads @ 16.4 \'b5s/read; 3.65 M reads/minu[ 8<-----] 00:00:12 769,308 reads @ 16.5 \'b5s/read; 3.63 M reads/minu[ 8=-----] 00:00:13 840,544 reads @ 16.6 \'b5s/read; 3.61 M reads/minuDone 00:00:14 873,957 reads @ 16.6 \'b5s/read; 3.61 M reads/minute\ Finished in 14.538 s (16.635 \'b5s/read; 3.61 M reads/minute).\ \ === Summary ===\ \ Total read pairs processed: 873,957\ Read 1 with adapter: 871,416 (99.7%)\ Read 2 with adapter: 864,416 (98.9%)\ \ == Read fate breakdown ==\ Pairs that were too short: 0 (0.0%)\ Pairs written (passing filters): 873,957 (100.0%)\ \ Total basepairs processed: 438,726,414 bp\ Read 1: 219,363,207 bp\ Read 2: 219,363,207 bp\ Quality-trimmed: 0 bp (0.0%)\ Read 1: 0 bp\ Read 2: 0 bp\ Total written (filtered): 401,415,933 bp (91.5%)\ Read 1: 200,202,808 bp\ Read 2: 201,213,125 bp\ \ === First read: Adapter 1 ===\ \ Sequence: GTGCCAGCMGCCGCGGTAA; Type: regular 5'; Length: 19; Trimmed: 871416 times\ \ Minimum overlap: 3\ No. of allowed errors:\ 1-9 bp: 0; 10-19 bp: 1\ \ Overview of removed sequences\ length count expect max.err error counts\ 3 60 13655.6 0 60\ 4 1 3413.9 0 1\ 14 1 0.0 1 0 1\ 15 1 0.0 1 1\ 17 9 0.0 1 7 2\ 18 14 0.0 1 8 6\ 19 84 0.0 1 39 45\ 20 469 0.0 1 252 217\ 21 9885 0.0 1 2979 6906\ 22 859302 0.0 1 809613 49689\ 23 1585 0.0 1 407 1178\ 24 4 0.0 1 3 1\ 25 1 0.0 1 1\ \ \ === Second read: Adapter 2 ===\ \ Sequence: GGACTACHVGGGTWTCTAAT; Type: regular 5'; Length: 20; Trimmed: 864416 times\ \ Minimum overlap: 3\ No. of allowed errors:\ 1-9 bp: 0; 10-19 bp: 1; 20 bp: 2\ \ Overview of removed sequences\ length count expect max.err error counts\ 3 14 13655.6 0 14\ 4 62 3413.9 0 62\ 10 1 0.8 1 0 1\ 11 1 0.2 1 0 1\ 13 1 0.0 1 0 1\ 14 4 0.0 1 2 2\ 15 5 0.0 1 3 2\ 16 5 0.0 1 2 3\ 17 13 0.0 1 8 5\ 18 25 0.0 1 14 11\ 19 494 0.0 1 45 56 393\ 20 6857 0.0 2 906 5643 308\ 21 854334 0.0 2 819028 29081 6225\ 22 2171 0.0 2 556 1503 112\ 23 318 0.0 2 159 83 76\ 24 4 0.0 2 1 1 2\ 25 1 0.0 2 1\ 26 2 0.0 2 1 1\ 27 4 0.0 2 4\ 28 1 0.0 2 0 0 1\ 29 2 0.0 2 2\ 47 1 0.0 2 0 0 1\ 57 2 0.0 2 0 0 2\ 58 3 0.0 2 0 2 1\ 59 14 0.0 2 2 4 8\ 60 14 0.0 2 3 2 9\ 61 22 0.0 2 2 3 17\ 62 34 0.0 2 2 10 22\ 63 6 0.0 2 1 0 5\ 64 1 0.0 2 0 0 1\ \ Command: cutadapt --cores 3 --error-rate 0.1 --times 1 --overlap 3 --minimum-length 1 -q 0,0 --quality-base 33 -o /var/folders/kh/zt2dzkrx2x7df59wctc6jhqr0000gn/T/q2-CasavaOneEightSingleLanePerSampleDirFmt-40l92u2s/P01-08G-M8-MI-Feces-R1-F8R15_S63_L001_R1_001.fastq.gz -p /var/folders/kh/zt2dzkrx2x7df59wctc6jhqr0000gn/T/q2-CasavaOneEightSingleLanePerSampleDirFmt-40l92u2s/P01-08G-M8-MI-Feces-R1-F8R15_S63_L001_R2_001.fastq.gz --front GTGCCAGCMGCCGCGGTAA -G GGACTACHVGGGTWTCTAAT /var/folders/kh/zt2dzkrx2x7df59wctc6jhqr0000gn/T/qiime2/abcdef/data/d6e36ee0-da28-4588-bc05-68643a35716c/data/P01-08G-M8-MI-Feces-R1-F8R15_S63_L001_R1_001.fastq.gz /var/folders/kh/zt2dzkrx2x7df59wctc6jhqr0000gn/T/qiime2/abcdef/data/d6e36ee0-da28-4588-bc05-68643a35716c/data/P01-08G-M8-MI-Feces-R1-F8R15_S63_L001_R2_001.fastq.gz\ \ This is cutadapt 4.2 with Python 3.8.16\ Command line parameters: --cores 3 --error-rate 0.1 --times 1 --overlap 3 --minimum-length 1 -q 0,0 --quality-base 33 -o /var/folders/kh/zt2dzkrx2x7df59wctc6jhqr0000gn/T/q2-CasavaOneEightSingleLanePerSampleDirFmt-40l92u2s/P01-08G-M8-MI-Feces-R1-F8R15_S63_L001_R1_001.fastq.gz -p /var/folders/kh/zt2dzkrx2x7df59wctc6jhqr0000gn/T/q2-CasavaOneEightSingleLanePerSampleDirFmt-40l92u2s/P01-08G-M8-MI-Feces-R1-F8R15_S63_L001_R2_001.fastq.gz --front GTGCCAGCMGCCGCGGTAA -G GGACTACHVGGGTWTCTAAT /var/folders/kh/zt2dzkrx2x7df59wctc6jhqr0000gn/T/qiime2/abcdef/data/d6e36ee0-da28-4588-bc05-68643a35716c/data/P01-08G-M8-MI-Feces-R1-F8R15_S63_L001_R1_001.fastq.gz /var/folders/kh/zt2dzkrx2x7df59wctc6jhqr0000gn/T/qiime2/abcdef/data/d6e36ee0-da28-4588-bc05-68643a35716c/data/P01-08G-M8-MI-Feces-R1-F8R15_S63_L001_R2_001.fastq.gz\ Processing paired-end reads on 3 cores ...\ [8<----------] 00:00:01 64,111 reads @ 17.0 \'b5s/read; 3.54 M reads/minu[8=----------] 00:00:02 142,467 reads @ 13.5 \'b5s/read; 4.45 M reads/minu[ 8<---------] 00:00:03 220,823 reads @ 13.8 \'b5s/read; 4.36 M reads/minu[ 8=---------] 00:00:04 299,180 reads @ 13.8 \'b5s/read; 4.35 M reads/minu[ 8<--------] 00:00:05 377,530 reads @ 14.1 \'b5s/read; 4.26 M reads/minu[ 8=--------] 00:00:06 455,885 reads @ 13.8 \'b5s/read; 4.35 M reads/minuDone 00:00:06 479,891 reads @ 14.4 \'b5s/read; 4.17 M reads/minute\ Finished in 6.923 s (14.426 \'b5s/read; 4.16 M reads/minute).\ \ === Summary ===\ \ Total read pairs processed: 479,891\ Read 1 with adapter: 478,481 (99.7%)\ Read 2 with adapter: 474,875 (99.0%)\ \ == Read fate breakdown ==\ Pairs that were too short: 0 (0.0%)\ Pairs written (passing filters): 479,891 (100.0%)\ \ Total basepairs processed: 240,905,282 bp\ Read 1: 120,452,641 bp\ Read 2: 120,452,641 bp\ Quality-trimmed: 0 bp (0.0%)\ Read 1: 0 bp\ Read 2: 0 bp\ Total written (filtered): 219,935,545 bp (91.3%)\ Read 1: 109,931,709 bp\ Read 2: 110,003,836 bp\ \ === First read: Adapter 1 ===\ \ Sequence: GTGCCAGCMGCCGCGGTAA; Type: regular 5'; Length: 19; Trimmed: 478481 times\ \ Minimum overlap: 3\ No. of allowed errors:\ 1-9 bp: 0; 10-19 bp: 1\ \ Overview of removed sequences\ length count expect max.err error counts\ 3 27 7498.3 0 27\ 4 1 1874.6 0 1\ 12 1 0.0 1 0 1\ 16 1 0.0 1 1\ 17 4 0.0 1 1 3\ 18 10 0.0 1 6 4\ 19 80 0.0 1 59 21\ 20 258 0.0 1 143 115\ 21 5194 0.0 1 1570 3624\ 22 472011 0.0 1 445150 26861\ 23 890 0.0 1 222 668\ 24 2 0.0 1 1 1\ 27 1 0.0 1 1\ 30 1 0.0 1 1\ \ \ === Second read: Adapter 2 ===\ \ Sequence: GGACTACHVGGGTWTCTAAT; Type: regular 5'; Length: 20; Trimmed: 474875 times\ \ Minimum overlap: 3\ No. of allowed errors:\ 1-9 bp: 0; 10-19 bp: 1; 20 bp: 2\ \ Overview of removed sequences\ length count expect max.err error counts\ 3 46 7498.3 0 46\ 13 2 0.0 1 1 1\ 14 3 0.0 1 0 3\ 15 8 0.0 1 4 4\ 16 2 0.0 1 2\ 17 3 0.0 1 2 1\ 18 6 0.0 1 5 1\ 19 25 0.0 1 8 15 2\ 20 528 0.0 2 186 69 273\ 21 3791 0.0 2 744 2876 171\ 22 469072 0.0 2 451524 14502 3046\ 23 1225 0.0 2 341 818 66\ 24 4 0.0 2 1 0 3\ 26 2 0.0 2 1 0 1\ 29 1 0.0 2 1\ 30 1 0.0 2 1\ 53 1 0.0 2 0 1\ 54 1 0.0 2 0 0 1\ 57 1 0.0 2 0 1\ 58 6 0.0 2 0 4 2\ 59 4 0.0 2 1 1 2\ 60 12 0.0 2 3 4 5\ 61 23 0.0 2 5 12 6\ 62 24 0.0 2 3 10 11\ 63 59 0.0 2 8 22 29\ 64 25 0.0 2 1 7 17\ \ Command: cutadapt --cores 3 --error-rate 0.1 --times 1 --overlap 3 --minimum-length 1 -q 0,0 --quality-base 33 -o /var/folders/kh/zt2dzkrx2x7df59wctc6jhqr0000gn/T/q2-CasavaOneEightSingleLanePerSampleDirFmt-40l92u2s/P01-08H-M8-MI-Feces-R2-F8R16_S64_L001_R1_001.fastq.gz -p /var/folders/kh/zt2dzkrx2x7df59wctc6jhqr0000gn/T/q2-CasavaOneEightSingleLanePerSampleDirFmt-40l92u2s/P01-08H-M8-MI-Feces-R2-F8R16_S64_L001_R2_001.fastq.gz --front GTGCCAGCMGCCGCGGTAA -G GGACTACHVGGGTWTCTAAT /var/folders/kh/zt2dzkrx2x7df59wctc6jhqr0000gn/T/qiime2/abcdef/data/d6e36ee0-da28-4588-bc05-68643a35716c/data/P01-08H-M8-MI-Feces-R2-F8R16_S64_L001_R1_001.fastq.gz /var/folders/kh/zt2dzkrx2x7df59wctc6jhqr0000gn/T/qiime2/abcdef/data/d6e36ee0-da28-4588-bc05-68643a35716c/data/P01-08H-M8-MI-Feces-R2-F8R16_S64_L001_R2_001.fastq.gz\ \ This is cutadapt 4.2 with Python 3.8.16\ Command line parameters: --cores 3 --error-rate 0.1 --times 1 --overlap 3 --minimum-length 1 -q 0,0 --quality-base 33 -o /var/folders/kh/zt2dzkrx2x7df59wctc6jhqr0000gn/T/q2-CasavaOneEightSingleLanePerSampleDirFmt-40l92u2s/P01-08H-M8-MI-Feces-R2-F8R16_S64_L001_R1_001.fastq.gz -p /var/folders/kh/zt2dzkrx2x7df59wctc6jhqr0000gn/T/q2-CasavaOneEightSingleLanePerSampleDirFmt-40l92u2s/P01-08H-M8-MI-Feces-R2-F8R16_S64_L001_R2_001.fastq.gz --front GTGCCAGCMGCCGCGGTAA -G GGACTACHVGGGTWTCTAAT /var/folders/kh/zt2dzkrx2x7df59wctc6jhqr0000gn/T/qiime2/abcdef/data/d6e36ee0-da28-4588-bc05-68643a35716c/data/P01-08H-M8-MI-Feces-R2-F8R16_S64_L001_R1_001.fastq.gz /var/folders/kh/zt2dzkrx2x7df59wctc6jhqr0000gn/T/qiime2/abcdef/data/d6e36ee0-da28-4588-bc05-68643a35716c/data/P01-08H-M8-MI-Feces-R2-F8R16_S64_L001_R2_001.fastq.gz\ Processing paired-end reads on 3 cores ...\ [8<----------] 00:00:01 64,113 reads @ 16.4 \'b5s/read; 3.65 M reads/minu[8=----------] 00:00:02 142,468 reads @ 13.5 \'b5s/read; 4.46 M reads/minu[ 8<---------] 00:00:03 220,829 reads @ 13.5 \'b5s/read; 4.45 M reads/minu[ 8=---------] 00:00:04 299,183 reads @ 13.9 \'b5s/read; 4.32 M reads/minu[ 8<--------] 00:00:05 377,536 reads @ 13.2 \'b5s/read; 4.54 M reads/minu[ 8=--------] 00:00:06 448,772 reads @ 14.5 \'b5s/read; 4.14 M reads/minu[ 8<-------] 00:00:07 527,125 reads @ 13.7 \'b5s/read; 4.39 M reads/minu[ 8=-------] 00:00:08 598,354 reads @ 15.0 \'b5s/read; 4.00 M reads/minuDone 00:00:09 652,272 reads @ 14.3 \'b5s/read; 4.21 M reads/minute\ Finished in 9.328 s (14.301 \'b5s/read; 4.20 M reads/minute).\ \ === Summary ===\ \ Total read pairs processed: 652,272\ Read 1 with adapter: 650,436 (99.7%)\ Read 2 with adapter: 644,044 (98.7%)\ \ == Read fate breakdown ==\ Pairs that were too short: 0 (0.0%)\ Pairs written (passing filters): 652,272 (100.0%)\ \ Total basepairs processed: 327,440,544 bp\ Read 1: 163,720,272 bp\ Read 2: 163,720,272 bp\ Quality-trimmed: 0 bp (0.0%)\ Read 1: 0 bp\ Read 2: 0 bp\ Total written (filtered): 298,334,055 bp (91.1%)\ Read 1: 149,418,092 bp\ Read 2: 148,915,963 bp\ \ === First read: Adapter 1 ===\ \ Sequence: GTGCCAGCMGCCGCGGTAA; Type: regular 5'; Length: 19; Trimmed: 650436 times\ \ Minimum overlap: 3\ No. of allowed errors:\ 1-9 bp: 0; 10-19 bp: 1\ \ Overview of removed sequences\ length count expect max.err error counts\ 3 20 10191.8 0 20\ 4 2 2547.9 0 2\ 14 1 0.0 1 0 1\ 15 1 0.0 1 0 1\ 16 1 0.0 1 1\ 17 6 0.0 1 5 1\ 18 15 0.0 1 8 7\ 19 86 0.0 1 58 28\ 20 366 0.0 1 216 150\ 21 7118 0.0 1 2130 4988\ 22 641615 0.0 1 605136 36479\ 23 1197 0.0 1 306 891\ 24 4 0.0 1 2 2\ 25 1 0.0 1 1\ 26 1 0.0 1 1\ 27 1 0.0 1 0 1\ 28 1 0.0 1 1\ \ \ === Second read: Adapter 2 ===\ \ Sequence: GGACTACHVGGGTWTCTAAT; Type: regular 5'; Length: 20; Trimmed: 644044 times\ \ Minimum overlap: 3\ No. of allowed errors:\ 1-9 bp: 0; 10-19 bp: 1; 20 bp: 2\ \ Overview of removed sequences\ length count expect max.err error counts\ 3 149 10191.8 0 149\ 4 31 2547.9 0 31\ 5 1 637.0 0 1\ 8 1 10.0 0 1\ 13 3 0.0 1 2 1\ 14 1 0.0 1 0 1\ 15 2 0.0 1 1 1\ 16 2 0.0 1 1 1\ 17 2 0.0 1 1 1\ 18 4 0.0 1 0 3 1\ 19 15 0.0 1 6 8 1\ 20 357 0.0 2 229 64 64\ 21 807 0.0 2 318 107 382\ 22 5520 0.0 2 1123 4198 199\ 23 635721 0.0 2 612382 18959 4380\ 24 1366 0.0 2 438 890 38\ 25 4 0.0 2 1 0 3\ 26 5 0.0 2 5\ 28 1 0.0 2 1\ 29 1 0.0 2 1\ 30 3 0.0 2 3\ 32 1 0.0 2 1\ 48 1 0.0 2 0 0 1\ 55 1 0.0 2 0 0 1\ 57 2 0.0 2 0 0 2\ 59 2 0.0 2 0 0 2\ 60 4 0.0 2 0 1 3\ 61 3 0.0 2 1 1 1\ 62 11 0.0 2 0 5 6\ 63 4 0.0 2 1 1 2\ 64 13 0.0 2 2 3 8\ 65 4 0.0 2 0 0 4\ 66 2 0.0 2 0 0 2\ \ Command: cutadapt --cores 3 --error-rate 0.1 --times 1 --overlap 3 --minimum-length 1 -q 0,0 --quality-base 33 -o /var/folders/kh/zt2dzkrx2x7df59wctc6jhqr0000gn/T/q2-CasavaOneEightSingleLanePerSampleDirFmt-40l92u2s/P01-12C-Control-EB-F10nR11_S91_L001_R1_001.fastq.gz -p /var/folders/kh/zt2dzkrx2x7df59wctc6jhqr0000gn/T/q2-CasavaOneEightSingleLanePerSampleDirFmt-40l92u2s/P01-12C-Control-EB-F10nR11_S91_L001_R2_001.fastq.gz --front GTGCCAGCMGCCGCGGTAA -G GGACTACHVGGGTWTCTAAT /var/folders/kh/zt2dzkrx2x7df59wctc6jhqr0000gn/T/qiime2/abcdef/data/d6e36ee0-da28-4588-bc05-68643a35716c/data/P01-12C-Control-EB-F10nR11_S91_L001_R1_001.fastq.gz /var/folders/kh/zt2dzkrx2x7df59wctc6jhqr0000gn/T/qiime2/abcdef/data/d6e36ee0-da28-4588-bc05-68643a35716c/data/P01-12C-Control-EB-F10nR11_S91_L001_R2_001.fastq.gz\ \ This is cutadapt 4.2 with Python 3.8.16\ Command line parameters: --cores 3 --error-rate 0.1 --times 1 --overlap 3 --minimum-length 1 -q 0,0 --quality-base 33 -o /var/folders/kh/zt2dzkrx2x7df59wctc6jhqr0000gn/T/q2-CasavaOneEightSingleLanePerSampleDirFmt-40l92u2s/P01-12C-Control-EB-F10nR11_S91_L001_R1_001.fastq.gz -p /var/folders/kh/zt2dzkrx2x7df59wctc6jhqr0000gn/T/q2-CasavaOneEightSingleLanePerSampleDirFmt-40l92u2s/P01-12C-Control-EB-F10nR11_S91_L001_R2_001.fastq.gz --front GTGCCAGCMGCCGCGGTAA -G GGACTACHVGGGTWTCTAAT /var/folders/kh/zt2dzkrx2x7df59wctc6jhqr0000gn/T/qiime2/abcdef/data/d6e36ee0-da28-4588-bc05-68643a35716c/data/P01-12C-Control-EB-F10nR11_S91_L001_R1_001.fastq.gz /var/folders/kh/zt2dzkrx2x7df59wctc6jhqr0000gn/T/qiime2/abcdef/data/d6e36ee0-da28-4588-bc05-68643a35716c/data/P01-12C-Control-EB-F10nR11_S91_L001_R2_001.fastq.gz\ Processing paired-end reads on 3 cores ...\ Done 00:00:00 4,380 reads @ 74.2 \'b5s/read; 0.81 M reads/minute\ Finished in 0.344 s (78.432 \'b5s/read; 0.76 M reads/minute).\ \ === Summary ===\ \ Total read pairs processed: 4,380\ Read 1 with adapter: 4,370 (99.8%)\ Read 2 with adapter: 4,321 (98.7%)\ \ == Read fate breakdown ==\ Pairs that were too short: 0 (0.0%)\ Pairs written (passing filters): 4,380 (100.0%)\ \ Total basepairs processed: 2,198,760 bp\ Read 1: 1,099,380 bp\ Read 2: 1,099,380 bp\ Quality-trimmed: 0 bp (0.0%)\ Read 1: 0 bp\ Read 2: 0 bp\ Total written (filtered): 2,007,756 bp (91.3%)\ Read 1: 1,003,294 bp\ Read 2: 1,004,462 bp\ \ === First read: Adapter 1 ===\ \ Sequence: GTGCCAGCMGCCGCGGTAA; Type: regular 5'; Length: 19; Trimmed: 4370 times\ \ Minimum overlap: 3\ No. of allowed errors:\ 1-9 bp: 0; 10-19 bp: 1\ \ Overview of removed sequences\ length count expect max.err error counts\ 21 65 0.0 1 12 53\ 22 4294 0.0 1 4089 205\ 23 11 0.0 1 2 9\ \ \ === Second read: Adapter 2 ===\ \ Sequence: GGACTACHVGGGTWTCTAAT; Type: regular 5'; Length: 20; Trimmed: 4321 times\ \ Minimum overlap: 3\ No. of allowed errors:\ 1-9 bp: 0; 10-19 bp: 1; 20 bp: 2\ \ Overview of removed sequences\ length count expect max.err error counts\ 20 4 0.0 2 1 0 3\ 21 184 0.0 2 9 166 9\ 22 4117 0.0 2 3955 137 25\ 23 15 0.0 2 7 8\ 55 1 0.0 2 0 1\ \ Command: cutadapt --cores 3 --error-rate 0.1 --times 1 --overlap 3 --minimum-length 1 -q 0,0 --quality-base 33 -o /var/folders/kh/zt2dzkrx2x7df59wctc6jhqr0000gn/T/q2-CasavaOneEightSingleLanePerSampleDirFmt-40l92u2s/P01-12D-Control-AATI-F10nR12_S92_L001_R1_001.fastq.gz -p /var/folders/kh/zt2dzkrx2x7df59wctc6jhqr0000gn/T/q2-CasavaOneEightSingleLanePerSampleDirFmt-40l92u2s/P01-12D-Control-AATI-F10nR12_S92_L001_R2_001.fastq.gz --front GTGCCAGCMGCCGCGGTAA -G GGACTACHVGGGTWTCTAAT /var/folders/kh/zt2dzkrx2x7df59wctc6jhqr0000gn/T/qiime2/abcdef/data/d6e36ee0-da28-4588-bc05-68643a35716c/data/P01-12D-Control-AATI-F10nR12_S92_L001_R1_001.fastq.gz /var/folders/kh/zt2dzkrx2x7df59wctc6jhqr0000gn/T/qiime2/abcdef/data/d6e36ee0-da28-4588-bc05-68643a35716c/data/P01-12D-Control-AATI-F10nR12_S92_L001_R2_001.fastq.gz\ \ This is cutadapt 4.2 with Python 3.8.16\ Command line parameters: --cores 3 --error-rate 0.1 --times 1 --overlap 3 --minimum-length 1 -q 0,0 --quality-base 33 -o /var/folders/kh/zt2dzkrx2x7df59wctc6jhqr0000gn/T/q2-CasavaOneEightSingleLanePerSampleDirFmt-40l92u2s/P01-12D-Control-AATI-F10nR12_S92_L001_R1_001.fastq.gz -p /var/folders/kh/zt2dzkrx2x7df59wctc6jhqr0000gn/T/q2-CasavaOneEightSingleLanePerSampleDirFmt-40l92u2s/P01-12D-Control-AATI-F10nR12_S92_L001_R2_001.fastq.gz --front GTGCCAGCMGCCGCGGTAA -G GGACTACHVGGGTWTCTAAT /var/folders/kh/zt2dzkrx2x7df59wctc6jhqr0000gn/T/qiime2/abcdef/data/d6e36ee0-da28-4588-bc05-68643a35716c/data/P01-12D-Control-AATI-F10nR12_S92_L001_R1_001.fastq.gz /var/folders/kh/zt2dzkrx2x7df59wctc6jhqr0000gn/T/qiime2/abcdef/data/d6e36ee0-da28-4588-bc05-68643a35716c/data/P01-12D-Control-AATI-F10nR12_S92_L001_R2_001.fastq.gz\ Processing paired-end reads on 3 cores ...\ Done 00:00:00 93 reads @ 1746.4 \'b5s/read; 0.03 M reads/minute\ Finished in 0.171 s (1842.883 \'b5s/read; 0.03 M reads/minute).\ \ === Summary ===\ \ Total read pairs processed: 93\ Read 1 with adapter: 85 (91.4%)\ Read 2 with adapter: 74 (79.6%)\ \ == Read fate breakdown ==\ Pairs that were too short: 0 (0.0%)\ Pairs written (passing filters): 93 (100.0%)\ \ Total basepairs processed: 46,686 bp\ Read 1: 23,343 bp\ Read 2: 23,343 bp\ Quality-trimmed: 0 bp (0.0%)\ Read 1: 0 bp\ Read 2: 0 bp\ Total written (filtered): 43,176 bp (92.5%)\ Read 1: 21,476 bp\ Read 2: 21,700 bp\ \ === First read: Adapter 1 ===\ \ Sequence: GTGCCAGCMGCCGCGGTAA; Type: regular 5'; Length: 19; Trimmed: 85 times\ \ Minimum overlap: 3\ No. of allowed errors:\ 1-9 bp: 0; 10-19 bp: 1\ \ Overview of removed sequences\ length count expect max.err error counts\ 20 1 0.0 1 1\ 21 2 0.0 1 1 1\ 22 81 0.0 1 76 5\ 23 1 0.0 1 0 1\ \ \ === Second read: Adapter 2 ===\ \ Sequence: GGACTACHVGGGTWTCTAAT; Type: regular 5'; Length: 20; Trimmed: 74 times\ \ Minimum overlap: 3\ No. of allowed errors:\ 1-9 bp: 0; 10-19 bp: 1; 20 bp: 2\ \ Overview of removed sequences\ length count expect max.err error counts\ 3 1 1.5 0 1\ 21 2 0.0 2 2\ 22 35 0.0 2 31 3 1\ 23 36 0.0 2 30 4 2\ \ Command: cutadapt --cores 3 --error-rate 0.1 --times 1 --overlap 3 --minimum-length 1 -q 0,0 --quality-base 33 -o /var/folders/kh/zt2dzkrx2x7df59wctc6jhqr0000gn/T/q2-CasavaOneEightSingleLanePerSampleDirFmt-40l92u2s/P01-12E-Control-NFW-F10nR13_S93_L001_R1_001.fastq.gz -p /var/folders/kh/zt2dzkrx2x7df59wctc6jhqr0000gn/T/q2-CasavaOneEightSingleLanePerSampleDirFmt-40l92u2s/P01-12E-Control-NFW-F10nR13_S93_L001_R2_001.fastq.gz --front GTGCCAGCMGCCGCGGTAA -G GGACTACHVGGGTWTCTAAT /var/folders/kh/zt2dzkrx2x7df59wctc6jhqr0000gn/T/qiime2/abcdef/data/d6e36ee0-da28-4588-bc05-68643a35716c/data/P01-12E-Control-NFW-F10nR13_S93_L001_R1_001.fastq.gz /var/folders/kh/zt2dzkrx2x7df59wctc6jhqr0000gn/T/qiime2/abcdef/data/d6e36ee0-da28-4588-bc05-68643a35716c/data/P01-12E-Control-NFW-F10nR13_S93_L001_R2_001.fastq.gz\ \ This is cutadapt 4.2 with Python 3.8.16\ Command line parameters: --cores 3 --error-rate 0.1 --times 1 --overlap 3 --minimum-length 1 -q 0,0 --quality-base 33 -o /var/folders/kh/zt2dzkrx2x7df59wctc6jhqr0000gn/T/q2-CasavaOneEightSingleLanePerSampleDirFmt-40l92u2s/P01-12E-Control-NFW-F10nR13_S93_L001_R1_001.fastq.gz -p /var/folders/kh/zt2dzkrx2x7df59wctc6jhqr0000gn/T/q2-CasavaOneEightSingleLanePerSampleDirFmt-40l92u2s/P01-12E-Control-NFW-F10nR13_S93_L001_R2_001.fastq.gz --front GTGCCAGCMGCCGCGGTAA -G GGACTACHVGGGTWTCTAAT /var/folders/kh/zt2dzkrx2x7df59wctc6jhqr0000gn/T/qiime2/abcdef/data/d6e36ee0-da28-4588-bc05-68643a35716c/data/P01-12E-Control-NFW-F10nR13_S93_L001_R1_001.fastq.gz /var/folders/kh/zt2dzkrx2x7df59wctc6jhqr0000gn/T/qiime2/abcdef/data/d6e36ee0-da28-4588-bc05-68643a35716c/data/P01-12E-Control-NFW-F10nR13_S93_L001_R2_001.fastq.gz\ Processing paired-end reads on 3 cores ...\ Done 00:00:00 1,703 reads @ 127.6 \'b5s/read; 0.47 M reads/minute\ Finished in 0.229 s (134.639 \'b5s/read; 0.45 M reads/minute).\ \ === Summary ===\ \ Total read pairs processed: 1,703\ Read 1 with adapter: 1,699 (99.8%)\ Read 2 with adapter: 1,674 (98.3%)\ \ == Read fate breakdown ==\ Pairs that were too short: 0 (0.0%)\ Pairs written (passing filters): 1,703 (100.0%)\ \ Total basepairs processed: 854,906 bp\ Read 1: 427,453 bp\ Read 2: 427,453 bp\ Quality-trimmed: 0 bp (0.0%)\ Read 1: 0 bp\ Read 2: 0 bp\ Total written (filtered): 784,025 bp (91.7%)\ Read 1: 390,094 bp\ Read 2: 393,931 bp\ \ === First read: Adapter 1 ===\ \ Sequence: GTGCCAGCMGCCGCGGTAA; Type: regular 5'; Length: 19; Trimmed: 1699 times\ \ Minimum overlap: 3\ No. of allowed errors:\ 1-9 bp: 0; 10-19 bp: 1\ \ Overview of removed sequences\ length count expect max.err error counts\ 20 1 0.0 1 1\ 21 22 0.0 1 4 18\ 22 1671 0.0 1 1589 82\ 23 5 0.0 1 2 3\ \ \ === Second read: Adapter 2 ===\ \ Sequence: GGACTACHVGGGTWTCTAAT; Type: regular 5'; Length: 20; Trimmed: 1674 times\ \ Minimum overlap: 3\ No. of allowed errors:\ 1-9 bp: 0; 10-19 bp: 1; 20 bp: 2\ \ Overview of removed sequences\ length count expect max.err error counts\ 19 14 0.0 1 1 11 2\ 20 1630 0.0 2 1561 57 12\ 21 4 0.0 2 0 4\ 22 26 0.0 2 23 2 1\ \ Command: cutadapt --cores 3 --error-rate 0.1 --times 1 --overlap 3 --minimum-length 1 -q 0,0 --quality-base 33 -o /var/folders/kh/zt2dzkrx2x7df59wctc6jhqr0000gn/T/q2-CasavaOneEightSingleLanePerSampleDirFmt-40l92u2s/P01-12F-Control-Mouse-F10nR14_S94_L001_R1_001.fastq.gz -p /var/folders/kh/zt2dzkrx2x7df59wctc6jhqr0000gn/T/q2-CasavaOneEightSingleLanePerSampleDirFmt-40l92u2s/P01-12F-Control-Mouse-F10nR14_S94_L001_R2_001.fastq.gz --front GTGCCAGCMGCCGCGGTAA -G GGACTACHVGGGTWTCTAAT /var/folders/kh/zt2dzkrx2x7df59wctc6jhqr0000gn/T/qiime2/abcdef/data/d6e36ee0-da28-4588-bc05-68643a35716c/data/P01-12F-Control-Mouse-F10nR14_S94_L001_R1_001.fastq.gz /var/folders/kh/zt2dzkrx2x7df59wctc6jhqr0000gn/T/qiime2/abcdef/data/d6e36ee0-da28-4588-bc05-68643a35716c/data/P01-12F-Control-Mouse-F10nR14_S94_L001_R2_001.fastq.gz\ \ This is cutadapt 4.2 with Python 3.8.16\ Command line parameters: --cores 3 --error-rate 0.1 --times 1 --overlap 3 --minimum-length 1 -q 0,0 --quality-base 33 -o /var/folders/kh/zt2dzkrx2x7df59wctc6jhqr0000gn/T/q2-CasavaOneEightSingleLanePerSampleDirFmt-40l92u2s/P01-12F-Control-Mouse-F10nR14_S94_L001_R1_001.fastq.gz -p /var/folders/kh/zt2dzkrx2x7df59wctc6jhqr0000gn/T/q2-CasavaOneEightSingleLanePerSampleDirFmt-40l92u2s/P01-12F-Control-Mouse-F10nR14_S94_L001_R2_001.fastq.gz --front GTGCCAGCMGCCGCGGTAA -G GGACTACHVGGGTWTCTAAT /var/folders/kh/zt2dzkrx2x7df59wctc6jhqr0000gn/T/qiime2/abcdef/data/d6e36ee0-da28-4588-bc05-68643a35716c/data/P01-12F-Control-Mouse-F10nR14_S94_L001_R1_001.fastq.gz /var/folders/kh/zt2dzkrx2x7df59wctc6jhqr0000gn/T/qiime2/abcdef/data/d6e36ee0-da28-4588-bc05-68643a35716c/data/P01-12F-Control-Mouse-F10nR14_S94_L001_R2_001.fastq.gz\ Processing paired-end reads on 3 cores ...\ Done 00:00:00 5,833 reads @ 61.6 \'b5s/read; 0.97 M reads/minute\ Finished in 0.381 s (65.360 \'b5s/read; 0.92 M reads/minute).\ \ === Summary ===\ \ Total read pairs processed: 5,833\ Read 1 with adapter: 5,820 (99.8%)\ Read 2 with adapter: 5,755 (98.7%)\ \ == Read fate breakdown ==\ Pairs that were too short: 0 (0.0%)\ Pairs written (passing filters): 5,833 (100.0%)\ \ Total basepairs processed: 2,928,166 bp\ Read 1: 1,464,083 bp\ Read 2: 1,464,083 bp\ Quality-trimmed: 0 bp (0.0%)\ Read 1: 0 bp\ Read 2: 0 bp\ Total written (filtered): 2,679,320 bp (91.5%)\ Read 1: 1,336,126 bp\ Read 2: 1,343,194 bp\ \ === First read: Adapter 1 ===\ \ Sequence: GTGCCAGCMGCCGCGGTAA; Type: regular 5'; Length: 19; Trimmed: 5820 times\ \ Minimum overlap: 3\ No. of allowed errors:\ 1-9 bp: 0; 10-19 bp: 1\ \ Overview of removed sequences\ length count expect max.err error counts\ 19 1 0.0 1 0 1\ 20 2 0.0 1 1 1\ 21 83 0.0 1 24 59\ 22 5727 0.0 1 5456 271\ 23 7 0.0 1 2 5\ \ \ === Second read: Adapter 2 ===\ \ Sequence: GGACTACHVGGGTWTCTAAT; Type: regular 5'; Length: 20; Trimmed: 5755 times\ \ Minimum overlap: 3\ No. of allowed errors:\ 1-9 bp: 0; 10-19 bp: 1; 20 bp: 2\ \ Overview of removed sequences\ length count expect max.err error counts\ 19 2 0.0 1 1 0 1\ 20 47 0.0 2 5 41 1\ 21 5650 0.0 2 5404 210 36\ 22 55 0.0 2 42 12 1\ 51 1 0.0 2 0 0 1\ \ Command: cutadapt --cores 3 --error-rate 0.1 --times 1 --overlap 3 --minimum-length 1 -q 0,0 --quality-base 33 -o /var/folders/kh/zt2dzkrx2x7df59wctc6jhqr0000gn/T/q2-CasavaOneEightSingleLanePerSampleDirFmt-40l92u2s/P01-12G-Control-BC-1ng-F10nR15_S95_L001_R1_001.fastq.gz -p /var/folders/kh/zt2dzkrx2x7df59wctc6jhqr0000gn/T/q2-CasavaOneEightSingleLanePerSampleDirFmt-40l92u2s/P01-12G-Control-BC-1ng-F10nR15_S95_L001_R2_001.fastq.gz --front GTGCCAGCMGCCGCGGTAA -G GGACTACHVGGGTWTCTAAT /var/folders/kh/zt2dzkrx2x7df59wctc6jhqr0000gn/T/qiime2/abcdef/data/d6e36ee0-da28-4588-bc05-68643a35716c/data/P01-12G-Control-BC-1ng-F10nR15_S95_L001_R1_001.fastq.gz /var/folders/kh/zt2dzkrx2x7df59wctc6jhqr0000gn/T/qiime2/abcdef/data/d6e36ee0-da28-4588-bc05-68643a35716c/data/P01-12G-Control-BC-1ng-F10nR15_S95_L001_R2_001.fastq.gz\ \ This is cutadapt 4.2 with Python 3.8.16\ Command line parameters: --cores 3 --error-rate 0.1 --times 1 --overlap 3 --minimum-length 1 -q 0,0 --quality-base 33 -o /var/folders/kh/zt2dzkrx2x7df59wctc6jhqr0000gn/T/q2-CasavaOneEightSingleLanePerSampleDirFmt-40l92u2s/P01-12G-Control-BC-1ng-F10nR15_S95_L001_R1_001.fastq.gz -p /var/folders/kh/zt2dzkrx2x7df59wctc6jhqr0000gn/T/q2-CasavaOneEightSingleLanePerSampleDirFmt-40l92u2s/P01-12G-Control-BC-1ng-F10nR15_S95_L001_R2_001.fastq.gz --front GTGCCAGCMGCCGCGGTAA -G GGACTACHVGGGTWTCTAAT /var/folders/kh/zt2dzkrx2x7df59wctc6jhqr0000gn/T/qiime2/abcdef/data/d6e36ee0-da28-4588-bc05-68643a35716c/data/P01-12G-Control-BC-1ng-F10nR15_S95_L001_R1_001.fastq.gz /var/folders/kh/zt2dzkrx2x7df59wctc6jhqr0000gn/T/qiime2/abcdef/data/d6e36ee0-da28-4588-bc05-68643a35716c/data/P01-12G-Control-BC-1ng-F10nR15_S95_L001_R2_001.fastq.gz\ Processing paired-end reads on 3 cores ...\ [8<----------] 00:00:01 64,112 reads @ 15.7 \'b5s/read; 3.82 M reads/minu[8=----------] 00:00:02 142,466 reads @ 13.1 \'b5s/read; 4.56 M reads/minu[ 8<---------] 00:00:03 220,823 reads @ 13.3 \'b5s/read; 4.50 M reads/minuDone 00:00:03 275,515 reads @ 14.2 \'b5s/read; 4.24 M reads/minute\ Finished in 3.916 s (14.212 \'b5s/read; 4.22 M reads/minute).\ \ === Summary ===\ \ Total read pairs processed: 275,515\ Read 1 with adapter: 274,940 (99.8%)\ Read 2 with adapter: 273,159 (99.1%)\ \ == Read fate breakdown ==\ Pairs that were too short: 0 (0.0%)\ Pairs written (passing filters): 275,515 (100.0%)\ \ Total basepairs processed: 138,308,530 bp\ Read 1: 69,154,265 bp\ Read 2: 69,154,265 bp\ Quality-trimmed: 0 bp (0.0%)\ Read 1: 0 bp\ Read 2: 0 bp\ Total written (filtered): 126,252,556 bp (91.3%)\ Read 1: 63,108,990 bp\ Read 2: 63,143,566 bp\ \ === First read: Adapter 1 ===\ \ Sequence: GTGCCAGCMGCCGCGGTAA; Type: regular 5'; Length: 19; Trimmed: 274940 times\ \ Minimum overlap: 3\ No. of allowed errors:\ 1-9 bp: 0; 10-19 bp: 1\ \ Overview of removed sequences\ length count expect max.err error counts\ 3 13 4304.9 0 13\ 4 1 1076.2 0 1\ 15 1 0.0 1 0 1\ 16 1 0.0 1 0 1\ 17 3 0.0 1 1 2\ 18 5 0.0 1 0 5\ 19 11 0.0 1 7 4\ 20 114 0.0 1 54 60\ 21 3239 0.0 1 936 2303\ 22 271145 0.0 1 258440 12705\ 23 406 0.0 1 123 283\ 24 1 0.0 1 1\ \ \ === Second read: Adapter 2 ===\ \ Sequence: GGACTACHVGGGTWTCTAAT; Type: regular 5'; Length: 20; Trimmed: 273159 times\ \ Minimum overlap: 3\ No. of allowed errors:\ 1-9 bp: 0; 10-19 bp: 1; 20 bp: 2\ \ Overview of removed sequences\ length count expect max.err error counts\ 3 26 4304.9 0 26\ 14 2 0.0 1 1 1\ 15 2 0.0 1 2\ 16 3 0.0 1 2 1\ 17 2 0.0 1 2\ 18 1 0.0 1 0 1\ 19 11 0.0 1 5 4 2\ 20 219 0.0 2 30 27 162\ 21 2139 0.0 2 376 1690 73\ 22 269983 0.0 2 260508 7844 1631\ 23 672 0.0 2 175 467 30\ 24 3 0.0 2 2 0 1\ 25 2 0.0 2 0 0 2\ 26 1 0.0 2 1\ 29 1 0.0 2 1\ 52 1 0.0 2 1\ 53 1 0.0 2 1\ 56 1 0.0 2 0 1\ 58 1 0.0 2 0 0 1\ 59 4 0.0 2 0 2 2\ 60 10 0.0 2 0 5 5\ 61 11 0.0 2 2 2 7\ 62 13 0.0 2 1 8 4\ 63 38 0.0 2 12 7 19\ 64 10 0.0 2 2 1 7\ 65 2 0.0 2 0 2\ \ Command: cutadapt --cores 3 --error-rate 0.1 --times 1 --overlap 3 --minimum-length 1 -q 0,0 --quality-base 33 -o /var/folders/kh/zt2dzkrx2x7df59wctc6jhqr0000gn/T/q2-CasavaOneEightSingleLanePerSampleDirFmt-40l92u2s/P01-12H-Control-AATI-F10nR16_S96_L001_R1_001.fastq.gz -p /var/folders/kh/zt2dzkrx2x7df59wctc6jhqr0000gn/T/q2-CasavaOneEightSingleLanePerSampleDirFmt-40l92u2s/P01-12H-Control-AATI-F10nR16_S96_L001_R2_001.fastq.gz --front GTGCCAGCMGCCGCGGTAA -G GGACTACHVGGGTWTCTAAT /var/folders/kh/zt2dzkrx2x7df59wctc6jhqr0000gn/T/qiime2/abcdef/data/d6e36ee0-da28-4588-bc05-68643a35716c/data/P01-12H-Control-AATI-F10nR16_S96_L001_R1_001.fastq.gz /var/folders/kh/zt2dzkrx2x7df59wctc6jhqr0000gn/T/qiime2/abcdef/data/d6e36ee0-da28-4588-bc05-68643a35716c/data/P01-12H-Control-AATI-F10nR16_S96_L001_R2_001.fastq.gz\ \ This is cutadapt 4.2 with Python 3.8.16\ Command line parameters: --cores 3 --error-rate 0.1 --times 1 --overlap 3 --minimum-length 1 -q 0,0 --quality-base 33 -o /var/folders/kh/zt2dzkrx2x7df59wctc6jhqr0000gn/T/q2-CasavaOneEightSingleLanePerSampleDirFmt-40l92u2s/P01-12H-Control-AATI-F10nR16_S96_L001_R1_001.fastq.gz -p /var/folders/kh/zt2dzkrx2x7df59wctc6jhqr0000gn/T/q2-CasavaOneEightSingleLanePerSampleDirFmt-40l92u2s/P01-12H-Control-AATI-F10nR16_S96_L001_R2_001.fastq.gz --front GTGCCAGCMGCCGCGGTAA -G GGACTACHVGGGTWTCTAAT /var/folders/kh/zt2dzkrx2x7df59wctc6jhqr0000gn/T/qiime2/abcdef/data/d6e36ee0-da28-4588-bc05-68643a35716c/data/P01-12H-Control-AATI-F10nR16_S96_L001_R1_001.fastq.gz /var/folders/kh/zt2dzkrx2x7df59wctc6jhqr0000gn/T/qiime2/abcdef/data/d6e36ee0-da28-4588-bc05-68643a35716c/data/P01-12H-Control-AATI-F10nR16_S96_L001_R2_001.fastq.gz\ Processing paired-end reads on 3 cores ...\ Done 00:00:00 83 reads @ 2050.2 \'b5s/read; 0.03 M reads/minute\ Finished in 0.177 s (2136.676 \'b5s/read; 0.03 M reads/minute).\ \ === Summary ===\ \ Total read pairs processed: 83\ Read 1 with adapter: 80 (96.4%)\ Read 2 with adapter: 66 (79.5%)\ \ == Read fate breakdown ==\ Pairs that were too short: 0 (0.0%)\ Pairs written (passing filters): 83 (100.0%)\ \ Total basepairs processed: 41,666 bp\ Read 1: 20,833 bp\ Read 2: 20,833 bp\ Quality-trimmed: 0 bp (0.0%)\ Read 1: 0 bp\ Read 2: 0 bp\ Total written (filtered): 38,423 bp (92.2%)\ Read 1: 19,079 bp\ Read 2: 19,344 bp\ \ === First read: Adapter 1 ===\ \ Sequence: GTGCCAGCMGCCGCGGTAA; Type: regular 5'; Length: 19; Trimmed: 80 times\ \ Minimum overlap: 3\ No. of allowed errors:\ 1-9 bp: 0; 10-19 bp: 1\ \ Overview of removed sequences\ length count expect max.err error counts\ 21 6 0.0 1 4 2\ 22 74 0.0 1 72 2\ \ \ === Second read: Adapter 2 ===\ \ Sequence: GGACTACHVGGGTWTCTAAT; Type: regular 5'; Length: 20; Trimmed: 66 times\ \ Minimum overlap: 3\ No. of allowed errors:\ 1-9 bp: 0; 10-19 bp: 1; 20 bp: 2\ \ Overview of removed sequences\ length count expect max.err error counts\ 21 2 0.0 2 2\ 22 25 0.0 2 21 4\ 23 39 0.0 2 31 6 2}