(qiime2-2021.4) Microbiomess-Mac-Pro:Mauritania_Test1 microbiomes$ qiime cutadapt trim-paired \ > --i-demultiplexed-sequences demux.qza \ > --p-adapter-f AMCVGGATTAGATACCCBG \ > --p-adapter-r ACGTCATCCCCACCTTCC \ > --o-trimmed-sequences demux_trimmed.qza \ > --verbose Running external command line application. This may print messages to stdout and/or stderr. The commands to be run are below. These commands cannot be manually re-run as they will depend on temporary files that no longer exist. Command: cutadapt --cores 1 --error-rate 0.1 --times 1 --overlap 3 --minimum-length 1 -o /var/folders/d7/0rpznrmn0rvfhz7qb56q0f2h0000gn/T/q2-CasavaOneEightSingleLanePerSampleDirFmt-oi5gnzse/1_S1_L001_R1_001.fastq.gz -p /var/folders/d7/0rpznrmn0rvfhz7qb56q0f2h0000gn/T/q2-CasavaOneEightSingleLanePerSampleDirFmt-oi5gnzse/1_S1_L001_R2_001.fastq.gz --adapter AMCVGGATTAGATACCCBG -A ACGTCATCCCCACCTTCC /var/folders/d7/0rpznrmn0rvfhz7qb56q0f2h0000gn/T/qiime2-archive-j16qc0cz/a04b10c8-5b78-4949-bb1f-7a895e9185ac/data/1_S1_L001_R1_001.fastq.gz /var/folders/d7/0rpznrmn0rvfhz7qb56q0f2h0000gn/T/qiime2-archive-j16qc0cz/a04b10c8-5b78-4949-bb1f-7a895e9185ac/data/1_S1_L001_R2_001.fastq.gz This is cutadapt 3.4 with Python 3.8.8 Command line parameters: --cores 1 --error-rate 0.1 --times 1 --overlap 3 --minimum-length 1 -o /var/folders/d7/0rpznrmn0rvfhz7qb56q0f2h0000gn/T/q2-CasavaOneEightSingleLanePerSampleDirFmt-oi5gnzse/1_S1_L001_R1_001.fastq.gz -p /var/folders/d7/0rpznrmn0rvfhz7qb56q0f2h0000gn/T/q2-CasavaOneEightSingleLanePerSampleDirFmt-oi5gnzse/1_S1_L001_R2_001.fastq.gz --adapter AMCVGGATTAGATACCCBG -A ACGTCATCCCCACCTTCC /var/folders/d7/0rpznrmn0rvfhz7qb56q0f2h0000gn/T/qiime2-archive-j16qc0cz/a04b10c8-5b78-4949-bb1f-7a895e9185ac/data/1_S1_L001_R1_001.fastq.gz /var/folders/d7/0rpznrmn0rvfhz7qb56q0f2h0000gn/T/qiime2-archive-j16qc0cz/a04b10c8-5b78-4949-bb1f-7a895e9185ac/data/1_S1_L001_R2_001.fastq.gz Processing reads on 1 core in paired-end mode ... [--------->8 ] 00:00:28 1,201,983 reads @ 23.6 µs/read; 2.55 M reads/minute Finished in 28.34 s (24 µs/read; 2.54 M reads/minute). === Summary === Total read pairs processed: 1,201,983 Read 1 with adapter: 1,200,316 (99.9%) Read 2 with adapter: 1,192,200 (99.2%) Pairs that were too short: 1,201,731 (100.0%) Pairs written (passing filters): 252 (0.0%) Total basepairs processed: 601,224,037 bp Read 1: 300,773,777 bp Read 2: 300,450,260 bp Total written (filtered): 121,520 bp (0.0%) Read 1: 59,043 bp Read 2: 62,477 bp === First read: Adapter 1 === Sequence: AMCVGGATTAGATACCCBG; Type: regular 3'; Length: 19; Trimmed: 1200316 times No. of allowed errors: 1-9 bp: 0; 10-19 bp: 1 Bases preceding removed adapters: A: 0.1% C: 0.0% G: 0.1% T: 0.0% none/other: 99.8% Overview of removed sequences length count expect max.err error counts 3 6 18781.0 0 6 4 19 4695.2 0 19 5 2 1173.8 0 2 7 1 73.4 0 1 35 50 0.0 1 49 1 36 77 0.0 1 75 2 37 29 0.0 1 28 1 38 3 0.0 1 3 39 4 0.0 1 4 40 78 0.0 1 77 1 41 121 0.0 1 111 10 42 374 0.0 1 366 8 43 148 0.0 1 146 2 44 71 0.0 1 68 3 45 35 0.0 1 34 1 46 16 0.0 1 14 2 47 8 0.0 1 8 48 5 0.0 1 5 49 14 0.0 1 14 50 3 0.0 1 3 52 1 0.0 1 1 56 1 0.0 1 1 62 1 0.0 1 1 87 1 0.0 1 1 90 6 0.0 1 6 99 1 0.0 1 1 102 1 0.0 1 1 104 1 0.0 1 0 1 106 2 0.0 1 2 107 19 0.0 1 17 2 108 12 0.0 1 12 117 3 0.0 1 3 123 1 0.0 1 1 126 6 0.0 1 6 127 37 0.0 1 36 1 128 21 0.0 1 20 1 129 2 0.0 1 2 130 1 0.0 1 1 139 1 0.0 1 1 150 3 0.0 1 3 153 1 0.0 1 1 159 1 0.0 1 1 160 1 0.0 1 1 161 1 0.0 1 1 162 1 0.0 1 1 163 1 0.0 1 1 165 3 0.0 1 3 166 1 0.0 1 1 167 1 0.0 1 1 168 1 0.0 1 1 169 2 0.0 1 2 170 6 0.0 1 6 177 1 0.0 1 1 185 1 0.0 1 1 187 1 0.0 1 0 1 188 3 0.0 1 3 189 40 0.0 1 39 1 190 8 0.0 1 7 1 191 7 0.0 1 7 192 7 0.0 1 6 1 193 1 0.0 1 0 1 197 1 0.0 1 1 201 3 0.0 1 3 202 7 0.0 1 6 1 203 1 0.0 1 1 209 1 0.0 1 1 210 1 0.0 1 1 211 1 0.0 1 1 213 4 0.0 1 4 214 9 0.0 1 8 1 216 3 0.0 1 3 219 1 0.0 1 1 221 1 0.0 1 1 222 2 0.0 1 2 223 4 0.0 1 4 224 1 0.0 1 1 225 4 0.0 1 3 1 226 20 0.0 1 20 227 5 0.0 1 5 228 2 0.0 1 2 229 2 0.0 1 2 230 3 0.0 1 3 231 5 0.0 1 5 234 2 0.0 1 2 235 1 0.0 1 1 236 1 0.0 1 1 237 2 0.0 1 2 238 2 0.0 1 2 239 2 0.0 1 2 240 5 0.0 1 5 241 34 0.0 1 34 242 9 0.0 1 8 1 243 10 0.0 1 7 3 244 18 0.0 1 17 1 245 85 0.0 1 84 1 246 202 0.0 1 195 7 247 854 0.0 1 811 43 248 21918 0.0 1 21375 543 249 114559 0.0 1 111957 2602 250 382110 0.0 1 374374 7736 251 679147 0.0 1 665309 13838 === Second read: Adapter 2 === Sequence: ACGTCATCCCCACCTTCC; Type: regular 3'; Length: 18; Trimmed: 1192200 times No. of allowed errors: 1-9 bp: 0; 10-18 bp: 1 Bases preceding removed adapters: A: 0.3% C: 0.0% G: 0.5% T: 0.0% none/other: 99.2% Overview of removed sequences length count expect max.err error counts 3 62 18781.0 0 62 4 8 4695.2 0 8 35 54 0.0 1 51 3 36 81 0.0 1 78 3 37 31 0.0 1 25 6 38 2 0.0 1 2 39 2 0.0 1 0 2 40 81 0.0 1 77 4 41 115 0.0 1 113 2 42 380 0.0 1 364 16 43 155 0.0 1 149 6 44 75 0.0 1 73 2 45 34 0.0 1 33 1 46 17 0.0 1 17 47 7 0.0 1 7 48 5 0.0 1 5 49 14 0.0 1 13 1 50 2 0.0 1 2 52 1 0.0 1 1 56 1 0.0 1 1 62 1 0.0 1 1 84 1 0.0 1 0 1 87 1 0.0 1 1 90 5 0.0 1 5 93 1 0.0 1 0 1 94 1 0.0 1 0 1 95 2 0.0 1 0 2 96 2 0.0 1 0 2 97 6 0.0 1 0 6 102 1 0.0 1 1 106 2 0.0 1 2 107 18 0.0 1 18 108 12 0.0 1 12 109 1 0.0 1 1 117 3 0.0 1 3 123 1 0.0 1 1 126 6 0.0 1 6 127 38 0.0 1 36 2 128 21 0.0 1 21 129 2 0.0 1 2 130 1 0.0 1 1 139 1 0.0 1 1 142 5 0.0 1 0 5 144 3 0.0 1 0 3 150 3 0.0 1 2 1 153 1 0.0 1 1 159 1 0.0 1 1 160 1 0.0 1 0 1 161 1 0.0 1 1 162 1 0.0 1 1 163 1 0.0 1 1 165 3 0.0 1 3 166 1 0.0 1 1 167 1 0.0 1 1 169 3 0.0 1 3 170 5 0.0 1 5 177 1 0.0 1 1 185 1 0.0 1 1 187 1 0.0 1 1 188 3 0.0 1 3 189 41 0.0 1 41 190 9 0.0 1 6 3 191 8 0.0 1 7 1 192 7 0.0 1 7 193 1 0.0 1 1 195 1 0.0 1 1 197 1 0.0 1 1 201 2 0.0 1 2 202 6 0.0 1 6 203 1 0.0 1 1 204 1 0.0 1 1 205 9 0.0 1 9 207 14 0.0 1 14 208 1 0.0 1 0 1 209 1 0.0 1 1 211 1 0.0 1 1 212 1 0.0 1 0 1 213 4 0.0 1 4 214 8 0.0 1 7 1 216 3 0.0 1 3 219 6 0.0 1 6 220 3 0.0 1 3 221 2 0.0 1 2 224 2 0.0 1 2 225 6 0.0 1 6 226 20 0.0 1 18 2 227 5 0.0 1 5 228 2 0.0 1 2 231 2 0.0 1 2 233 1 0.0 1 1 234 2 0.0 1 2 235 1 0.0 1 1 236 1 0.0 1 1 237 2 0.0 1 2 240 1 0.0 1 1 241 1 0.0 1 1 242 1 0.0 1 0 1 243 1 0.0 1 1 244 18 0.0 1 17 1 245 20 0.0 1 20 246 11 0.0 1 9 2 247 24 0.0 1 19 5 248 3198 0.0 1 3039 159 249 59066 0.0 1 56748 2318 250 863372 0.0 1 837697 25675 251 265022 0.0 1 255123 9899 Command: cutadapt --cores 1 --error-rate 0.1 --times 1 --overlap 3 --minimum-length 1 -o /var/folders/d7/0rpznrmn0rvfhz7qb56q0f2h0000gn/T/q2-CasavaOneEightSingleLanePerSampleDirFmt-oi5gnzse/4_S4_L001_R1_001.fastq.gz -p /var/folders/d7/0rpznrmn0rvfhz7qb56q0f2h0000gn/T/q2-CasavaOneEightSingleLanePerSampleDirFmt-oi5gnzse/4_S4_L001_R2_001.fastq.gz --adapter AMCVGGATTAGATACCCBG -A ACGTCATCCCCACCTTCC /var/folders/d7/0rpznrmn0rvfhz7qb56q0f2h0000gn/T/qiime2-archive-j16qc0cz/a04b10c8-5b78-4949-bb1f-7a895e9185ac/data/4_S4_L001_R1_001.fastq.gz /var/folders/d7/0rpznrmn0rvfhz7qb56q0f2h0000gn/T/qiime2-archive-j16qc0cz/a04b10c8-5b78-4949-bb1f-7a895e9185ac/data/4_S4_L001_R2_001.fastq.gz This is cutadapt 3.4 with Python 3.8.8 Command line parameters: --cores 1 --error-rate 0.1 --times 1 --overlap 3 --minimum-length 1 -o /var/folders/d7/0rpznrmn0rvfhz7qb56q0f2h0000gn/T/q2-CasavaOneEightSingleLanePerSampleDirFmt-oi5gnzse/4_S4_L001_R1_001.fastq.gz -p /var/folders/d7/0rpznrmn0rvfhz7qb56q0f2h0000gn/T/q2-CasavaOneEightSingleLanePerSampleDirFmt-oi5gnzse/4_S4_L001_R2_001.fastq.gz --adapter AMCVGGATTAGATACCCBG -A ACGTCATCCCCACCTTCC /var/folders/d7/0rpznrmn0rvfhz7qb56q0f2h0000gn/T/qiime2-archive-j16qc0cz/a04b10c8-5b78-4949-bb1f-7a895e9185ac/data/4_S4_L001_R1_001.fastq.gz /var/folders/d7/0rpznrmn0rvfhz7qb56q0f2h0000gn/T/qiime2-archive-j16qc0cz/a04b10c8-5b78-4949-bb1f-7a895e9185ac/data/4_S4_L001_R2_001.fastq.gz Processing reads on 1 core in paired-end mode ... [ 8=----] 00:00:16 694,034 reads @ 23.5 µs/read; 2.55 M reads/minute Finished in 16.35 s (24 µs/read; 2.55 M reads/minute). === Summary === Total read pairs processed: 694,034 Read 1 with adapter: 693,079 (99.9%) Read 2 with adapter: 688,486 (99.2%) Pairs that were too short: 693,874 (100.0%) Pairs written (passing filters): 160 (0.0%) Total basepairs processed: 345,934,806 bp Read 1: 172,917,570 bp Read 2: 173,017,236 bp Total written (filtered): 73,757 bp (0.0%) Read 1: 35,847 bp Read 2: 37,910 bp === First read: Adapter 1 === Sequence: AMCVGGATTAGATACCCBG; Type: regular 3'; Length: 19; Trimmed: 693079 times No. of allowed errors: 1-9 bp: 0; 10-19 bp: 1 Bases preceding removed adapters: A: 0.1% C: 0.0% G: 0.1% T: 0.0% none/other: 99.8% Overview of removed sequences length count expect max.err error counts 3 23 10844.3 0 23 4 13 2711.1 0 13 5 3 677.8 0 3 35 35 0.0 1 32 3 36 78 0.0 1 77 1 37 54 0.0 1 52 2 38 13 0.0 1 12 1 39 41 0.0 1 39 2 40 521 0.0 1 505 16 41 715 0.0 1 693 22 42 877 0.0 1 870 7 43 274 0.0 1 270 4 44 46 0.0 1 44 2 45 37 0.0 1 37 46 10 0.0 1 10 49 32 0.0 1 31 1 50 7 0.0 1 7 55 1 0.0 1 1 63 1 0.0 1 1 68 1 0.0 1 1 69 15 0.0 1 14 1 70 5 0.0 1 5 72 1 0.0 1 1 83 2 0.0 1 2 89 1 0.0 1 1 90 1 0.0 1 1 91 1 0.0 1 1 95 1 0.0 1 1 98 1 0.0 1 1 99 2 0.0 1 2 102 2 0.0 1 1 1 106 2 0.0 1 2 107 3 0.0 1 3 108 1 0.0 1 1 110 5 0.0 1 5 111 2 0.0 1 2 113 2 0.0 1 2 119 2 0.0 1 2 120 2 0.0 1 2 121 1 0.0 1 1 124 2 0.0 1 2 128 13 0.0 1 13 129 29 0.0 1 29 130 14 0.0 1 14 131 3 0.0 1 3 132 11 0.0 1 11 133 9 0.0 1 9 134 4 0.0 1 3 1 135 1 0.0 1 1 141 1 0.0 1 1 143 3 0.0 1 3 144 2 0.0 1 2 146 1 0.0 1 1 147 1 0.0 1 1 148 4 0.0 1 4 149 1 0.0 1 1 151 2 0.0 1 2 152 26 0.0 1 26 153 3 0.0 1 3 157 5 0.0 1 4 1 158 111 0.0 1 109 2 159 37 0.0 1 37 160 10 0.0 1 9 1 162 4 0.0 1 3 1 163 141 0.0 1 140 1 164 62 0.0 1 59 3 165 18 0.0 1 18 166 9 0.0 1 7 2 167 2 0.0 1 2 168 1 0.0 1 1 171 1 0.0 1 0 1 172 2 0.0 1 2 173 1 0.0 1 1 175 1 0.0 1 1 177 2 0.0 1 2 179 2 0.0 1 2 180 2 0.0 1 1 1 181 3 0.0 1 3 183 2 0.0 1 2 184 2 0.0 1 2 186 2 0.0 1 1 1 187 1 0.0 1 1 188 3 0.0 1 3 189 2 0.0 1 2 190 3 0.0 1 2 1 191 4 0.0 1 1 3 192 184 0.0 1 180 4 193 37 0.0 1 37 194 7 0.0 1 7 195 11 0.0 1 11 196 12 0.0 1 12 197 4 0.0 1 4 198 2 0.0 1 2 199 8 0.0 1 8 200 3 0.0 1 2 1 201 63 0.0 1 62 1 202 185 0.0 1 183 2 203 88 0.0 1 86 2 204 32 0.0 1 31 1 205 16 0.0 1 16 206 4 0.0 1 4 208 2 0.0 1 2 209 4 0.0 1 4 211 3 0.0 1 3 212 5 0.0 1 4 1 213 26 0.0 1 26 214 36 0.0 1 35 1 215 17 0.0 1 17 218 1 0.0 1 1 219 3 0.0 1 3 220 1 0.0 1 1 221 1 0.0 1 1 222 2 0.0 1 2 223 1 0.0 1 1 224 4 0.0 1 4 225 1 0.0 1 1 228 2 0.0 1 1 1 231 4 0.0 1 4 232 2 0.0 1 2 234 1 0.0 1 1 235 2 0.0 1 2 236 1 0.0 1 1 237 2 0.0 1 2 238 5 0.0 1 5 239 3 0.0 1 3 240 24 0.0 1 24 241 49 0.0 1 49 242 13 0.0 1 12 1 243 22 0.0 1 21 1 244 37 0.0 1 36 1 245 37 0.0 1 36 1 246 234 0.0 1 225 9 247 3019 0.0 1 2929 90 248 34891 0.0 1 34195 696 249 133723 0.0 1 131302 2421 250 215101 0.0 1 210907 4194 251 301747 0.0 1 295699 6048 === Second read: Adapter 2 === Sequence: ACGTCATCCCCACCTTCC; Type: regular 3'; Length: 18; Trimmed: 688486 times No. of allowed errors: 1-9 bp: 0; 10-18 bp: 1 Bases preceding removed adapters: A: 0.0% C: 0.0% G: 0.0% T: 0.0% none/other: 99.9% Overview of removed sequences length count expect max.err error counts 3 66 10844.3 0 66 5 1 677.8 0 1 35 32 0.0 1 28 4 36 82 0.0 1 76 6 37 60 0.0 1 57 3 38 10 0.0 1 10 39 40 0.0 1 34 6 40 500 0.0 1 480 20 41 708 0.0 1 686 22 42 890 0.0 1 863 27 43 274 0.0 1 263 11 44 43 0.0 1 43 45 38 0.0 1 37 1 46 12 0.0 1 12 48 1 0.0 1 0 1 49 31 0.0 1 30 1 50 7 0.0 1 6 1 55 1 0.0 1 1 69 16 0.0 1 16 70 5 0.0 1 5 83 1 0.0 1 1 85 1 0.0 1 1 89 1 0.0 1 1 90 1 0.0 1 1 91 1 0.0 1 1 96 1 0.0 1 0 1 97 3 0.0 1 0 3 98 3 0.0 1 0 3 99 2 0.0 1 2 102 1 0.0 1 1 106 2 0.0 1 1 1 107 3 0.0 1 3 108 1 0.0 1 1 110 5 0.0 1 5 111 4 0.0 1 4 113 2 0.0 1 2 119 2 0.0 1 2 120 2 0.0 1 2 121 1 0.0 1 1 124 2 0.0 1 2 128 12 0.0 1 12 129 27 0.0 1 27 130 13 0.0 1 12 1 131 3 0.0 1 3 132 11 0.0 1 11 133 9 0.0 1 9 134 3 0.0 1 3 135 1 0.0 1 1 140 1 0.0 1 0 1 141 2 0.0 1 1 1 142 6 0.0 1 0 6 143 3 0.0 1 3 144 6 0.0 1 2 4 146 1 0.0 1 1 147 1 0.0 1 1 148 5 0.0 1 5 149 1 0.0 1 1 151 2 0.0 1 2 152 27 0.0 1 27 153 3 0.0 1 3 156 6 0.0 1 6 157 5 0.0 1 3 2 158 108 0.0 1 103 5 159 38 0.0 1 38 160 13 0.0 1 12 1 161 1 0.0 1 1 162 5 0.0 1 5 163 142 0.0 1 137 5 164 61 0.0 1 60 1 165 18 0.0 1 18 166 9 0.0 1 9 167 2 0.0 1 2 168 2 0.0 1 2 171 1 0.0 1 1 172 2 0.0 1 2 173 1 0.0 1 1 175 2 0.0 1 2 176 1 0.0 1 1 177 2 0.0 1 2 179 2 0.0 1 2 180 3 0.0 1 3 181 8 0.0 1 8 183 2 0.0 1 2 184 6 0.0 1 6 185 2 0.0 1 2 186 8 0.0 1 8 187 3 0.0 1 3 188 5 0.0 1 5 189 7 0.0 1 7 190 6 0.0 1 5 1 191 7 0.0 1 6 1 192 176 0.0 1 173 3 193 38 0.0 1 37 1 194 8 0.0 1 7 1 195 11 0.0 1 10 1 196 12 0.0 1 12 197 3 0.0 1 3 198 2 0.0 1 2 199 8 0.0 1 8 200 3 0.0 1 3 201 61 0.0 1 56 5 202 187 0.0 1 185 2 203 91 0.0 1 90 1 204 33 0.0 1 33 205 16 0.0 1 16 206 5 0.0 1 5 207 15 0.0 1 15 208 2 0.0 1 2 209 5 0.0 1 5 210 2 0.0 1 2 211 3 0.0 1 3 212 6 0.0 1 6 213 26 0.0 1 23 3 214 37 0.0 1 37 215 16 0.0 1 16 216 1 0.0 1 0 1 218 1 0.0 1 0 1 219 5 0.0 1 5 220 4 0.0 1 4 221 1 0.0 1 1 222 2 0.0 1 2 223 1 0.0 1 1 224 3 0.0 1 3 225 2 0.0 1 2 228 2 0.0 1 2 230 1 0.0 1 1 231 5 0.0 1 5 232 1 0.0 1 1 234 1 0.0 1 1 235 1 0.0 1 1 236 1 0.0 1 0 1 237 2 0.0 1 2 238 2 0.0 1 2 239 2 0.0 1 2 240 3 0.0 1 2 1 242 2 0.0 1 2 243 1 0.0 1 1 244 10 0.0 1 8 2 245 9 0.0 1 7 2 246 9 0.0 1 9 247 44 0.0 1 39 5 248 1916 0.0 1 1828 88 249 67421 0.0 1 65452 1969 250 356964 0.0 1 346370 10594 251 257832 0.0 1 249461 8371 Command: cutadapt --cores 1 --error-rate 0.1 --times 1 --overlap 3 --minimum-length 1 -o /var/folders/d7/0rpznrmn0rvfhz7qb56q0f2h0000gn/T/q2-CasavaOneEightSingleLanePerSampleDirFmt-oi5gnzse/8_S8_L001_R1_001.fastq.gz -p /var/folders/d7/0rpznrmn0rvfhz7qb56q0f2h0000gn/T/q2-CasavaOneEightSingleLanePerSampleDirFmt-oi5gnzse/8_S8_L001_R2_001.fastq.gz --adapter AMCVGGATTAGATACCCBG -A ACGTCATCCCCACCTTCC /var/folders/d7/0rpznrmn0rvfhz7qb56q0f2h0000gn/T/qiime2-archive-j16qc0cz/a04b10c8-5b78-4949-bb1f-7a895e9185ac/data/8_S8_L001_R1_001.fastq.gz /var/folders/d7/0rpznrmn0rvfhz7qb56q0f2h0000gn/T/qiime2-archive-j16qc0cz/a04b10c8-5b78-4949-bb1f-7a895e9185ac/data/8_S8_L001_R2_001.fastq.gz This is cutadapt 3.4 with Python 3.8.8 Command line parameters: --cores 1 --error-rate 0.1 --times 1 --overlap 3 --minimum-length 1 -o /var/folders/d7/0rpznrmn0rvfhz7qb56q0f2h0000gn/T/q2-CasavaOneEightSingleLanePerSampleDirFmt-oi5gnzse/8_S8_L001_R1_001.fastq.gz -p /var/folders/d7/0rpznrmn0rvfhz7qb56q0f2h0000gn/T/q2-CasavaOneEightSingleLanePerSampleDirFmt-oi5gnzse/8_S8_L001_R2_001.fastq.gz --adapter AMCVGGATTAGATACCCBG -A ACGTCATCCCCACCTTCC /var/folders/d7/0rpznrmn0rvfhz7qb56q0f2h0000gn/T/qiime2-archive-j16qc0cz/a04b10c8-5b78-4949-bb1f-7a895e9185ac/data/8_S8_L001_R1_001.fastq.gz /var/folders/d7/0rpznrmn0rvfhz7qb56q0f2h0000gn/T/qiime2-archive-j16qc0cz/a04b10c8-5b78-4949-bb1f-7a895e9185ac/data/8_S8_L001_R2_001.fastq.gz Processing reads on 1 core in paired-end mode ... [ 8<---] 00:00:17 715,767 reads @ 24.5 µs/read; 2.45 M reads/minute Finished in 17.52 s (24 µs/read; 2.45 M reads/minute). === Summary === Total read pairs processed: 715,767 Read 1 with adapter: 714,969 (99.9%) Read 2 with adapter: 710,480 (99.3%) Pairs that were too short: 715,651 (100.0%) Pairs written (passing filters): 116 (0.0%) Total basepairs processed: 356,073,566 bp Read 1: 177,896,993 bp Read 2: 178,176,573 bp Total written (filtered): 53,811 bp (0.0%) Read 1: 25,747 bp Read 2: 28,064 bp === First read: Adapter 1 === Sequence: AMCVGGATTAGATACCCBG; Type: regular 3'; Length: 19; Trimmed: 714969 times No. of allowed errors: 1-9 bp: 0; 10-19 bp: 1 Bases preceding removed adapters: A: 0.2% C: 0.0% G: 0.1% T: 0.0% none/other: 99.7% Overview of removed sequences length count expect max.err error counts 3 28 11183.9 0 28 4 10 2796.0 0 10 5 6 699.0 0 6 6 1 174.7 0 1 35 121 0.0 1 117 4 36 180 0.0 1 176 4 37 78 0.0 1 76 2 38 12 0.0 1 12 39 59 0.0 1 55 4 40 1204 0.0 1 1181 23 41 1295 0.0 1 1281 14 42 1149 0.0 1 1133 16 43 407 0.0 1 398 9 44 121 0.0 1 120 1 45 40 0.0 1 38 2 46 13 0.0 1 13 47 30 0.0 1 29 1 48 28 0.0 1 28 49 12 0.0 1 12 50 5 0.0 1 5 52 3 0.0 1 3 54 32 0.0 1 31 1 55 75 0.0 1 74 1 56 48 0.0 1 48 57 18 0.0 1 18 58 3 0.0 1 3 59 1 0.0 1 1 63 1 0.0 1 1 64 1 0.0 1 1 67 1 0.0 1 1 69 4 0.0 1 4 73 1 0.0 1 1 74 1 0.0 1 1 75 2 0.0 1 2 83 2 0.0 1 2 84 2 0.0 1 2 91 2 0.0 1 1 1 95 1 0.0 1 1 97 2 0.0 1 2 99 2 0.0 1 2 103 1 0.0 1 0 1 108 2 0.0 1 2 110 1 0.0 1 1 111 4 0.0 1 4 112 2 0.0 1 2 116 1 0.0 1 1 121 1 0.0 1 1 128 2 0.0 1 2 129 34 0.0 1 34 130 34 0.0 1 32 2 131 8 0.0 1 8 138 53 0.0 1 52 1 139 8 0.0 1 8 146 1 0.0 1 1 148 1 0.0 1 1 158 1 0.0 1 1 163 1 0.0 1 1 168 1 0.0 1 1 169 4 0.0 1 4 170 1 0.0 1 1 171 2 0.0 1 1 1 175 1 0.0 1 1 178 1 0.0 1 1 180 5 0.0 1 5 184 1 0.0 1 1 185 2 0.0 1 2 186 1 0.0 1 1 187 13 0.0 1 5 8 188 2 0.0 1 2 189 3 0.0 1 2 1 190 2 0.0 1 2 193 1 0.0 1 1 194 4 0.0 1 4 195 3 0.0 1 3 197 1 0.0 1 1 198 3 0.0 1 3 199 6 0.0 1 6 201 5 0.0 1 4 1 202 11 0.0 1 10 1 203 12 0.0 1 9 3 204 6 0.0 1 5 1 205 2 0.0 1 2 206 2 0.0 1 2 207 1 0.0 1 1 208 3 0.0 1 3 209 2 0.0 1 2 210 1 0.0 1 1 211 3 0.0 1 3 212 22 0.0 1 20 2 213 29 0.0 1 28 1 214 18 0.0 1 18 215 5 0.0 1 5 216 5 0.0 1 4 1 217 1 0.0 1 1 218 7 0.0 1 7 220 1 0.0 1 1 221 2 0.0 1 2 222 3 0.0 1 3 223 1 0.0 1 1 224 1 0.0 1 1 225 2 0.0 1 2 231 4 0.0 1 4 232 2 0.0 1 2 233 1 0.0 1 1 234 1 0.0 1 1 236 2 0.0 1 2 237 1 0.0 1 1 238 6 0.0 1 6 239 1 0.0 1 1 240 9 0.0 1 9 241 36 0.0 1 33 3 242 24 0.0 1 23 1 243 74 0.0 1 73 1 244 68 0.0 1 68 245 43 0.0 1 42 1 246 228 0.0 1 222 6 247 6528 0.0 1 6341 187 248 47172 0.0 1 46287 885 249 141010 0.0 1 138586 2424 250 237744 0.0 1 233585 4159 251 276657 0.0 1 271647 5010 === Second read: Adapter 2 === Sequence: ACGTCATCCCCACCTTCC; Type: regular 3'; Length: 18; Trimmed: 710480 times No. of allowed errors: 1-9 bp: 0; 10-18 bp: 1 Bases preceding removed adapters: A: 0.4% C: 0.1% G: 0.5% T: 0.0% none/other: 98.9% Overview of removed sequences length count expect max.err error counts 3 84 11183.9 0 84 4 1 2796.0 0 1 11 1 0.2 1 0 1 35 113 0.0 1 101 12 36 171 0.0 1 168 3 37 78 0.0 1 73 5 38 14 0.0 1 12 2 39 53 0.0 1 46 7 40 1157 0.0 1 1117 40 41 1273 0.0 1 1238 35 42 1163 0.0 1 1126 37 43 394 0.0 1 383 11 44 126 0.0 1 118 8 45 41 0.0 1 41 46 13 0.0 1 13 47 27 0.0 1 26 1 48 27 0.0 1 27 49 12 0.0 1 12 50 5 0.0 1 5 52 3 0.0 1 3 54 31 0.0 1 30 1 55 82 0.0 1 81 1 56 49 0.0 1 48 1 57 17 0.0 1 17 58 5 0.0 1 5 59 1 0.0 1 1 67 1 0.0 1 1 69 4 0.0 1 4 73 1 0.0 1 1 74 1 0.0 1 1 75 2 0.0 1 2 83 2 0.0 1 2 84 2 0.0 1 2 85 1 0.0 1 0 1 91 1 0.0 1 1 95 3 0.0 1 1 2 97 5 0.0 1 2 3 98 1 0.0 1 0 1 108 2 0.0 1 1 1 110 1 0.0 1 1 111 4 0.0 1 4 112 2 0.0 1 2 116 1 0.0 1 1 121 1 0.0 1 1 128 2 0.0 1 2 129 36 0.0 1 34 2 130 33 0.0 1 33 131 8 0.0 1 8 138 49 0.0 1 49 139 10 0.0 1 9 1 141 2 0.0 1 0 2 142 5 0.0 1 0 5 144 1 0.0 1 0 1 146 2 0.0 1 2 148 2 0.0 1 2 158 1 0.0 1 1 161 1 0.0 1 1 163 1 0.0 1 1 168 1 0.0 1 1 169 3 0.0 1 3 170 1 0.0 1 1 171 2 0.0 1 2 174 1 0.0 1 1 175 4 0.0 1 4 176 1 0.0 1 1 177 1 0.0 1 1 178 1 0.0 1 1 180 5 0.0 1 5 181 5 0.0 1 5 182 1 0.0 1 1 183 4 0.0 1 4 184 4 0.0 1 4 185 4 0.0 1 4 186 3 0.0 1 3 187 13 0.0 1 13 188 4 0.0 1 4 189 4 0.0 1 4 190 6 0.0 1 6 191 2 0.0 1 2 193 1 0.0 1 1 194 4 0.0 1 4 195 3 0.0 1 3 197 1 0.0 1 1 198 3 0.0 1 3 199 7 0.0 1 7 201 6 0.0 1 6 202 13 0.0 1 13 203 15 0.0 1 13 2 204 7 0.0 1 7 205 3 0.0 1 3 206 3 0.0 1 3 207 14 0.0 1 13 1 208 3 0.0 1 3 209 3 0.0 1 3 210 1 0.0 1 1 211 3 0.0 1 3 212 19 0.0 1 19 213 32 0.0 1 32 214 19 0.0 1 19 215 5 0.0 1 5 216 5 0.0 1 5 218 8 0.0 1 8 220 4 0.0 1 4 221 1 0.0 1 1 222 2 0.0 1 2 224 1 0.0 1 1 225 2 0.0 1 2 229 1 0.0 1 1 231 1 0.0 1 1 232 2 0.0 1 2 234 1 0.0 1 1 238 4 0.0 1 2 2 239 1 0.0 1 1 240 2 0.0 1 1 1 241 3 0.0 1 2 1 242 1 0.0 1 1 243 1 0.0 1 1 244 13 0.0 1 12 1 245 7 0.0 1 4 3 246 9 0.0 1 8 1 247 44 0.0 1 40 4 248 2102 0.0 1 1993 109 249 52118 0.0 1 50443 1675 250 312265 0.0 1 302647 9618 251 338518 0.0 1 328312 10206 Command: cutadapt --cores 1 --error-rate 0.1 --times 1 --overlap 3 --minimum-length 1 -o /var/folders/d7/0rpznrmn0rvfhz7qb56q0f2h0000gn/T/q2-CasavaOneEightSingleLanePerSampleDirFmt-oi5gnzse/14_S14_L001_R1_001.fastq.gz -p /var/folders/d7/0rpznrmn0rvfhz7qb56q0f2h0000gn/T/q2-CasavaOneEightSingleLanePerSampleDirFmt-oi5gnzse/14_S14_L001_R2_001.fastq.gz --adapter AMCVGGATTAGATACCCBG -A ACGTCATCCCCACCTTCC /var/folders/d7/0rpznrmn0rvfhz7qb56q0f2h0000gn/T/qiime2-archive-j16qc0cz/a04b10c8-5b78-4949-bb1f-7a895e9185ac/data/14_S14_L001_R1_001.fastq.gz /var/folders/d7/0rpznrmn0rvfhz7qb56q0f2h0000gn/T/qiime2-archive-j16qc0cz/a04b10c8-5b78-4949-bb1f-7a895e9185ac/data/14_S14_L001_R2_001.fastq.gz This is cutadapt 3.4 with Python 3.8.8 Command line parameters: --cores 1 --error-rate 0.1 --times 1 --overlap 3 --minimum-length 1 -o /var/folders/d7/0rpznrmn0rvfhz7qb56q0f2h0000gn/T/q2-CasavaOneEightSingleLanePerSampleDirFmt-oi5gnzse/14_S14_L001_R1_001.fastq.gz -p /var/folders/d7/0rpznrmn0rvfhz7qb56q0f2h0000gn/T/q2-CasavaOneEightSingleLanePerSampleDirFmt-oi5gnzse/14_S14_L001_R2_001.fastq.gz --adapter AMCVGGATTAGATACCCBG -A ACGTCATCCCCACCTTCC /var/folders/d7/0rpznrmn0rvfhz7qb56q0f2h0000gn/T/qiime2-archive-j16qc0cz/a04b10c8-5b78-4949-bb1f-7a895e9185ac/data/14_S14_L001_R1_001.fastq.gz /var/folders/d7/0rpznrmn0rvfhz7qb56q0f2h0000gn/T/qiime2-archive-j16qc0cz/a04b10c8-5b78-4949-bb1f-7a895e9185ac/data/14_S14_L001_R2_001.fastq.gz Processing reads on 1 core in paired-end mode ... [ 8=---] 00:00:18 767,127 reads @ 24.2 µs/read; 2.48 M reads/minute Finished in 18.60 s (24 µs/read; 2.48 M reads/minute). === Summary === Total read pairs processed: 767,127 Read 1 with adapter: 765,965 (99.8%) Read 2 with adapter: 761,386 (99.3%) Pairs that were too short: 766,930 (100.0%) Pairs written (passing filters): 197 (0.0%) Total basepairs processed: 383,290,356 bp Read 1: 191,675,103 bp Read 2: 191,615,253 bp Total written (filtered): 93,172 bp (0.0%) Read 1: 45,703 bp Read 2: 47,469 bp === First read: Adapter 1 === Sequence: AMCVGGATTAGATACCCBG; Type: regular 3'; Length: 19; Trimmed: 765965 times No. of allowed errors: 1-9 bp: 0; 10-19 bp: 1 Bases preceding removed adapters: A: 0.1% C: 0.0% G: 0.1% T: 0.0% none/other: 99.8% Overview of removed sequences length count expect max.err error counts 3 26 11986.4 0 26 4 7 2996.6 0 7 5 5 749.1 0 5 7 1 46.8 0 1 35 26 0.0 1 26 36 44 0.0 1 42 2 37 11 0.0 1 11 38 2 0.0 1 1 1 39 5 0.0 1 4 1 40 139 0.0 1 135 4 41 173 0.0 1 168 5 42 172 0.0 1 169 3 43 67 0.0 1 65 2 44 15 0.0 1 15 45 5 0.0 1 4 1 46 2 0.0 1 2 47 2 0.0 1 2 48 12 0.0 1 11 1 49 12 0.0 1 12 50 4 0.0 1 4 56 1 0.0 1 1 57 1 0.0 1 1 61 1 0.0 1 1 62 2 0.0 1 2 63 1 0.0 1 1 67 1 0.0 1 1 68 2 0.0 1 2 70 3 0.0 1 3 71 9 0.0 1 9 72 6 0.0 1 6 73 1 0.0 1 1 74 4 0.0 1 4 75 3 0.0 1 3 76 2 0.0 1 2 77 1 0.0 1 1 78 2 0.0 1 2 81 1 0.0 1 1 84 1 0.0 1 1 86 4 0.0 1 4 87 43 0.0 1 43 88 5 0.0 1 5 89 4 0.0 1 4 90 12 0.0 1 11 1 91 5 0.0 1 5 92 10 0.0 1 10 93 40 0.0 1 37 3 94 24 0.0 1 24 95 4 0.0 1 4 96 1 0.0 1 1 98 3 0.0 1 2 1 99 4 0.0 1 3 1 100 2 0.0 1 2 101 4 0.0 1 4 102 2 0.0 1 2 104 1 0.0 1 1 107 4 0.0 1 4 108 3 0.0 1 3 109 1 0.0 1 1 110 6 0.0 1 6 114 1 0.0 1 1 116 1 0.0 1 1 117 2 0.0 1 2 118 3 0.0 1 3 119 1 0.0 1 1 120 3 0.0 1 3 121 2 0.0 1 2 123 2 0.0 1 2 124 2 0.0 1 2 125 2 0.0 1 2 126 1 0.0 1 0 1 127 45 0.0 1 44 1 128 8 0.0 1 7 1 129 2 0.0 1 2 130 2 0.0 1 2 132 2 0.0 1 2 133 4 0.0 1 4 134 1 0.0 1 1 138 2 0.0 1 1 1 139 9 0.0 1 9 140 1 0.0 1 1 141 2 0.0 1 2 142 2 0.0 1 2 145 1 0.0 1 1 146 1 0.0 1 1 147 1 0.0 1 1 149 1 0.0 1 1 150 1 0.0 1 1 155 2 0.0 1 2 156 13 0.0 1 13 157 2 0.0 1 2 158 3 0.0 1 3 160 1 0.0 1 1 161 1 0.0 1 1 162 1 0.0 1 1 163 5 0.0 1 5 164 2 0.0 1 2 165 2 0.0 1 2 166 1 0.0 1 1 168 1 0.0 1 1 171 1 0.0 1 1 173 1 0.0 1 1 174 1 0.0 1 1 177 2 0.0 1 2 178 1 0.0 1 1 179 6 0.0 1 4 2 180 157 0.0 1 149 8 181 67 0.0 1 65 2 182 28 0.0 1 26 2 183 2 0.0 1 2 184 1 0.0 1 1 185 1 0.0 1 1 186 176 0.0 1 172 4 187 134 0.0 1 132 2 188 13 0.0 1 13 189 4 0.0 1 4 191 2 0.0 1 2 194 8 0.0 1 7 1 195 6 0.0 1 6 196 4 0.0 1 4 197 14 0.0 1 14 198 3 0.0 1 3 199 1 0.0 1 1 201 1 0.0 1 1 202 8 0.0 1 8 203 16 0.0 1 16 205 1 0.0 1 1 206 1 0.0 1 1 207 1 0.0 1 1 209 3 0.0 1 3 212 11 0.0 1 11 213 22 0.0 1 21 1 214 28 0.0 1 28 215 9 0.0 1 9 216 1 0.0 1 1 217 4 0.0 1 4 218 1 0.0 1 1 219 2 0.0 1 2 220 1 0.0 1 1 221 3 0.0 1 1 2 223 4 0.0 1 3 1 224 9 0.0 1 9 225 1 0.0 1 1 226 1 0.0 1 1 228 3 0.0 1 3 229 1 0.0 1 1 230 1 0.0 1 1 231 2 0.0 1 2 233 2 0.0 1 2 234 2 0.0 1 2 236 1 0.0 1 1 237 7 0.0 1 7 238 2 0.0 1 2 239 4 0.0 1 4 240 25 0.0 1 22 3 241 45 0.0 1 45 242 18 0.0 1 18 243 61 0.0 1 60 1 244 43 0.0 1 43 245 44 0.0 1 41 3 246 248 0.0 1 241 7 247 1639 0.0 1 1594 45 248 30412 0.0 1 29727 685 249 162214 0.0 1 159292 2922 250 199905 0.0 1 195370 4535 251 369432 0.0 1 361851 7581 === Second read: Adapter 2 === Sequence: ACGTCATCCCCACCTTCC; Type: regular 3'; Length: 18; Trimmed: 761386 times No. of allowed errors: 1-9 bp: 0; 10-18 bp: 1 Bases preceding removed adapters: A: 0.4% C: 0.1% G: 0.5% T: 0.0% none/other: 99.1% Overview of removed sequences length count expect max.err error counts 3 56 11986.4 0 56 4 2 2996.6 0 2 35 26 0.0 1 21 5 36 44 0.0 1 40 4 37 12 0.0 1 12 38 2 0.0 1 2 39 4 0.0 1 2 2 40 135 0.0 1 131 4 41 158 0.0 1 151 7 42 177 0.0 1 172 5 43 63 0.0 1 61 2 44 15 0.0 1 13 2 45 4 0.0 1 4 46 2 0.0 1 1 1 47 2 0.0 1 2 48 8 0.0 1 8 49 11 0.0 1 11 50 4 0.0 1 3 1 56 1 0.0 1 1 57 1 0.0 1 1 62 2 0.0 1 2 63 1 0.0 1 1 70 2 0.0 1 2 71 9 0.0 1 9 72 6 0.0 1 6 73 1 0.0 1 1 74 4 0.0 1 4 75 3 0.0 1 3 76 2 0.0 1 2 77 1 0.0 1 1 78 2 0.0 1 1 1 81 1 0.0 1 1 82 2 0.0 1 1 1 84 2 0.0 1 1 1 86 4 0.0 1 3 1 87 40 0.0 1 37 3 88 4 0.0 1 4 89 4 0.0 1 4 90 15 0.0 1 15 91 5 0.0 1 5 92 11 0.0 1 11 93 37 0.0 1 36 1 94 24 0.0 1 24 95 5 0.0 1 4 1 96 1 0.0 1 1 97 4 0.0 1 0 4 98 4 0.0 1 3 1 99 2 0.0 1 2 100 2 0.0 1 2 101 4 0.0 1 4 102 2 0.0 1 2 104 1 0.0 1 1 107 4 0.0 1 4 108 3 0.0 1 3 109 1 0.0 1 1 110 7 0.0 1 7 114 1 0.0 1 1 116 1 0.0 1 1 117 2 0.0 1 2 118 4 0.0 1 3 1 119 1 0.0 1 1 120 3 0.0 1 3 121 2 0.0 1 2 123 2 0.0 1 2 124 2 0.0 1 2 125 2 0.0 1 2 126 1 0.0 1 1 127 46 0.0 1 45 1 128 7 0.0 1 7 129 2 0.0 1 2 130 2 0.0 1 2 132 2 0.0 1 2 133 4 0.0 1 4 134 1 0.0 1 1 138 4 0.0 1 4 139 10 0.0 1 9 1 140 3 0.0 1 3 141 3 0.0 1 2 1 142 9 0.0 1 2 7 144 1 0.0 1 0 1 145 1 0.0 1 1 146 2 0.0 1 2 147 5 0.0 1 5 149 2 0.0 1 2 150 1 0.0 1 1 152 1 0.0 1 1 155 2 0.0 1 0 2 156 14 0.0 1 14 157 1 0.0 1 1 158 3 0.0 1 3 160 2 0.0 1 2 161 1 0.0 1 1 162 1 0.0 1 1 163 5 0.0 1 5 164 2 0.0 1 2 165 2 0.0 1 1 1 166 1 0.0 1 1 168 1 0.0 1 1 169 1 0.0 1 1 171 1 0.0 1 1 172 1 0.0 1 1 173 1 0.0 1 1 174 1 0.0 1 1 176 1 0.0 1 1 177 4 0.0 1 4 178 3 0.0 1 3 179 6 0.0 1 5 1 180 159 0.0 1 157 2 181 64 0.0 1 62 2 182 27 0.0 1 27 183 2 0.0 1 2 184 4 0.0 1 4 185 2 0.0 1 1 1 186 178 0.0 1 176 2 187 135 0.0 1 131 4 188 15 0.0 1 14 1 189 6 0.0 1 6 191 2 0.0 1 2 193 1 0.0 1 1 194 8 0.0 1 7 1 195 5 0.0 1 5 196 4 0.0 1 3 1 197 14 0.0 1 13 1 198 3 0.0 1 3 199 2 0.0 1 2 201 1 0.0 1 1 202 10 0.0 1 9 1 203 18 0.0 1 18 205 2 0.0 1 2 206 4 0.0 1 3 1 207 15 0.0 1 15 209 5 0.0 1 5 212 11 0.0 1 11 213 22 0.0 1 22 214 27 0.0 1 26 1 215 8 0.0 1 8 217 4 0.0 1 4 218 2 0.0 1 2 219 5 0.0 1 5 220 1 0.0 1 1 221 5 0.0 1 5 223 3 0.0 1 3 224 6 0.0 1 6 225 1 0.0 1 1 226 2 0.0 1 2 228 1 0.0 1 1 231 2 0.0 1 2 234 1 0.0 1 1 235 1 0.0 1 1 237 8 0.0 1 8 238 1 0.0 1 0 1 239 1 0.0 1 1 241 2 0.0 1 0 2 242 1 0.0 1 0 1 243 25 0.0 1 25 244 24 0.0 1 24 245 12 0.0 1 12 246 12 0.0 1 10 2 247 50 0.0 1 44 6 248 3854 0.0 1 3729 125 249 115939 0.0 1 112754 3185 250 439511 0.0 1 425984 13527 251 200028 0.0 1 192701 7327 Command: cutadapt --cores 1 --error-rate 0.1 --times 1 --overlap 3 --minimum-length 1 -o /var/folders/d7/0rpznrmn0rvfhz7qb56q0f2h0000gn/T/q2-CasavaOneEightSingleLanePerSampleDirFmt-oi5gnzse/19_S19_L001_R1_001.fastq.gz -p /var/folders/d7/0rpznrmn0rvfhz7qb56q0f2h0000gn/T/q2-CasavaOneEightSingleLanePerSampleDirFmt-oi5gnzse/19_S19_L001_R2_001.fastq.gz --adapter AMCVGGATTAGATACCCBG -A ACGTCATCCCCACCTTCC /var/folders/d7/0rpznrmn0rvfhz7qb56q0f2h0000gn/T/qiime2-archive-j16qc0cz/a04b10c8-5b78-4949-bb1f-7a895e9185ac/data/19_S19_L001_R1_001.fastq.gz /var/folders/d7/0rpznrmn0rvfhz7qb56q0f2h0000gn/T/qiime2-archive-j16qc0cz/a04b10c8-5b78-4949-bb1f-7a895e9185ac/data/19_S19_L001_R2_001.fastq.gz This is cutadapt 3.4 with Python 3.8.8 Command line parameters: --cores 1 --error-rate 0.1 --times 1 --overlap 3 --minimum-length 1 -o /var/folders/d7/0rpznrmn0rvfhz7qb56q0f2h0000gn/T/q2-CasavaOneEightSingleLanePerSampleDirFmt-oi5gnzse/19_S19_L001_R1_001.fastq.gz -p /var/folders/d7/0rpznrmn0rvfhz7qb56q0f2h0000gn/T/q2-CasavaOneEightSingleLanePerSampleDirFmt-oi5gnzse/19_S19_L001_R2_001.fastq.gz --adapter AMCVGGATTAGATACCCBG -A ACGTCATCCCCACCTTCC /var/folders/d7/0rpznrmn0rvfhz7qb56q0f2h0000gn/T/qiime2-archive-j16qc0cz/a04b10c8-5b78-4949-bb1f-7a895e9185ac/data/19_S19_L001_R1_001.fastq.gz /var/folders/d7/0rpznrmn0rvfhz7qb56q0f2h0000gn/T/qiime2-archive-j16qc0cz/a04b10c8-5b78-4949-bb1f-7a895e9185ac/data/19_S19_L001_R2_001.fastq.gz Processing reads on 1 core in paired-end mode ... [ 8=-----] 00:00:14 594,540 reads @ 23.7 µs/read; 2.53 M reads/minute Finished in 14.09 s (24 µs/read; 2.53 M reads/minute). === Summary === Total read pairs processed: 594,540 Read 1 with adapter: 593,744 (99.9%) Read 2 with adapter: 589,696 (99.2%) Pairs that were too short: 594,408 (100.0%) Pairs written (passing filters): 132 (0.0%) Total basepairs processed: 296,554,817 bp Read 1: 148,181,345 bp Read 2: 148,373,472 bp Total written (filtered): 63,955 bp (0.0%) Read 1: 31,330 bp Read 2: 32,625 bp === First read: Adapter 1 === Sequence: AMCVGGATTAGATACCCBG; Type: regular 3'; Length: 19; Trimmed: 593744 times No. of allowed errors: 1-9 bp: 0; 10-19 bp: 1 Bases preceding removed adapters: A: 0.6% C: 0.0% G: 0.4% T: 0.0% none/other: 99.0% Overview of removed sequences length count expect max.err error counts 3 17 9289.7 0 17 4 14 2322.4 0 14 5 10 580.6 0 10 35 47 0.0 1 47 36 117 0.0 1 116 1 37 22 0.0 1 21 1 38 3 0.0 1 3 39 19 0.0 1 17 2 40 397 0.0 1 389 8 41 462 0.0 1 455 7 42 747 0.0 1 732 15 43 225 0.0 1 221 4 44 34 0.0 1 34 45 5 0.0 1 5 46 1 0.0 1 1 47 1 0.0 1 1 49 2 0.0 1 2 55 2 0.0 1 2 56 8 0.0 1 8 57 3 0.0 1 3 61 3 0.0 1 3 65 2 0.0 1 2 66 1 0.0 1 1 70 1 0.0 1 1 72 1 0.0 1 1 74 5 0.0 1 5 80 1 0.0 1 1 81 3 0.0 1 3 82 7 0.0 1 7 87 7 0.0 1 7 88 1 0.0 1 1 89 10 0.0 1 10 90 9 0.0 1 9 91 2 0.0 1 2 94 1 0.0 1 1 95 2 0.0 1 2 99 1 0.0 1 1 100 6 0.0 1 6 112 3 0.0 1 3 113 8 0.0 1 8 117 1 0.0 1 1 119 1 0.0 1 1 121 1 0.0 1 1 126 5 0.0 1 5 127 1 0.0 1 1 128 1 0.0 1 1 136 1 0.0 1 1 139 16 0.0 1 16 140 7 0.0 1 7 141 3 0.0 1 3 149 1 0.0 1 1 151 1 0.0 1 1 155 1 0.0 1 1 162 1 0.0 1 1 167 1 0.0 1 1 168 1 0.0 1 1 169 1 0.0 1 1 170 1 0.0 1 0 1 173 3 0.0 1 3 174 2 0.0 1 2 176 1 0.0 1 1 178 4 0.0 1 4 179 1 0.0 1 1 180 2 0.0 1 2 181 2 0.0 1 2 182 2 0.0 1 2 183 4 0.0 1 4 184 2 0.0 1 2 187 1 0.0 1 1 188 2 0.0 1 2 189 1 0.0 1 1 190 2 0.0 1 2 195 6 0.0 1 6 196 1 0.0 1 1 197 1 0.0 1 1 198 3 0.0 1 3 199 3 0.0 1 3 200 1 0.0 1 1 202 1 0.0 1 1 203 2 0.0 1 2 204 4 0.0 1 3 1 205 5 0.0 1 1 4 211 1 0.0 1 1 212 4 0.0 1 4 213 8 0.0 1 8 214 23 0.0 1 23 215 1 0.0 1 1 218 2 0.0 1 2 219 1 0.0 1 1 222 1 0.0 1 1 223 1 0.0 1 1 224 1 0.0 1 1 225 1 0.0 1 1 227 2 0.0 1 2 228 3 0.0 1 3 229 67 0.0 1 67 230 6 0.0 1 6 231 3 0.0 1 2 1 232 2 0.0 1 2 233 1 0.0 1 1 234 4 0.0 1 4 235 3 0.0 1 3 237 1 0.0 1 1 238 3 0.0 1 3 239 1 0.0 1 1 240 10 0.0 1 10 241 28 0.0 1 28 242 8 0.0 1 7 1 243 11 0.0 1 10 1 244 26 0.0 1 25 1 245 27 0.0 1 27 246 370 0.0 1 364 6 247 2851 0.0 1 2752 99 248 38126 0.0 1 37384 742 249 129146 0.0 1 126759 2387 250 195836 0.0 1 191911 3925 251 224854 0.0 1 220180 4674 === Second read: Adapter 2 === Sequence: ACGTCATCCCCACCTTCC; Type: regular 3'; Length: 18; Trimmed: 589696 times No. of allowed errors: 1-9 bp: 0; 10-18 bp: 1 Bases preceding removed adapters: A: 0.0% C: 0.0% G: 0.1% T: 0.0% none/other: 99.9% Overview of removed sequences length count expect max.err error counts 3 53 9289.7 0 53 4 3 2322.4 0 3 35 47 0.0 1 43 4 36 103 0.0 1 101 2 37 22 0.0 1 21 1 38 1 0.0 1 1 39 16 0.0 1 9 7 40 381 0.0 1 370 11 41 460 0.0 1 436 24 42 728 0.0 1 715 13 43 226 0.0 1 220 6 44 33 0.0 1 32 1 45 5 0.0 1 5 46 1 0.0 1 1 47 1 0.0 1 1 49 2 0.0 1 2 55 2 0.0 1 2 56 8 0.0 1 8 57 3 0.0 1 3 61 3 0.0 1 3 65 2 0.0 1 2 66 1 0.0 1 1 74 4 0.0 1 4 80 1 0.0 1 0 1 81 3 0.0 1 3 82 7 0.0 1 7 87 8 0.0 1 8 88 1 0.0 1 1 89 10 0.0 1 10 90 8 0.0 1 7 1 91 2 0.0 1 1 1 94 2 0.0 1 1 1 95 2 0.0 1 0 2 99 1 0.0 1 0 1 100 6 0.0 1 5 1 112 3 0.0 1 0 3 113 8 0.0 1 8 117 1 0.0 1 1 119 1 0.0 1 1 121 1 0.0 1 1 126 5 0.0 1 5 127 1 0.0 1 1 128 1 0.0 1 1 136 1 0.0 1 1 137 1 0.0 1 0 1 139 14 0.0 1 13 1 140 7 0.0 1 7 141 3 0.0 1 3 142 2 0.0 1 0 2 146 2 0.0 1 2 149 1 0.0 1 1 151 1 0.0 1 1 155 3 0.0 1 3 160 1 0.0 1 0 1 162 1 0.0 1 1 167 1 0.0 1 1 168 1 0.0 1 1 169 1 0.0 1 1 170 1 0.0 1 1 171 1 0.0 1 1 174 2 0.0 1 2 176 1 0.0 1 1 178 1 0.0 1 1 179 1 0.0 1 1 180 2 0.0 1 2 181 3 0.0 1 3 182 2 0.0 1 2 183 4 0.0 1 4 184 4 0.0 1 4 185 6 0.0 1 6 186 1 0.0 1 0 1 187 3 0.0 1 3 188 2 0.0 1 2 189 4 0.0 1 4 190 4 0.0 1 4 192 1 0.0 1 1 195 7 0.0 1 7 197 1 0.0 1 1 198 3 0.0 1 3 199 2 0.0 1 2 200 1 0.0 1 1 201 1 0.0 1 0 1 202 1 0.0 1 1 203 3 0.0 1 3 204 4 0.0 1 4 205 5 0.0 1 5 206 2 0.0 1 2 207 11 0.0 1 11 208 1 0.0 1 1 209 1 0.0 1 1 211 1 0.0 1 1 212 5 0.0 1 5 213 8 0.0 1 8 214 25 0.0 1 24 1 215 1 0.0 1 0 1 219 4 0.0 1 4 220 1 0.0 1 1 221 1 0.0 1 1 222 1 0.0 1 1 223 3 0.0 1 3 224 3 0.0 1 3 226 1 0.0 1 1 227 1 0.0 1 1 228 4 0.0 1 4 229 60 0.0 1 59 1 230 6 0.0 1 6 231 2 0.0 1 2 233 1 0.0 1 0 1 238 1 0.0 1 1 241 1 0.0 1 1 242 1 0.0 1 0 1 243 1 0.0 1 1 244 3 0.0 1 3 245 7 0.0 1 7 246 11 0.0 1 7 4 247 32 0.0 1 30 2 248 1277 0.0 1 1194 83 249 69188 0.0 1 67110 2078 250 255351 0.0 1 247260 8091 251 261392 0.0 1 252985 8407 Command: cutadapt --cores 1 --error-rate 0.1 --times 1 --overlap 3 --minimum-length 1 -o /var/folders/d7/0rpznrmn0rvfhz7qb56q0f2h0000gn/T/q2-CasavaOneEightSingleLanePerSampleDirFmt-oi5gnzse/31_S31_L001_R1_001.fastq.gz -p /var/folders/d7/0rpznrmn0rvfhz7qb56q0f2h0000gn/T/q2-CasavaOneEightSingleLanePerSampleDirFmt-oi5gnzse/31_S31_L001_R2_001.fastq.gz --adapter AMCVGGATTAGATACCCBG -A ACGTCATCCCCACCTTCC /var/folders/d7/0rpznrmn0rvfhz7qb56q0f2h0000gn/T/qiime2-archive-j16qc0cz/a04b10c8-5b78-4949-bb1f-7a895e9185ac/data/31_S31_L001_R1_001.fastq.gz /var/folders/d7/0rpznrmn0rvfhz7qb56q0f2h0000gn/T/qiime2-archive-j16qc0cz/a04b10c8-5b78-4949-bb1f-7a895e9185ac/data/31_S31_L001_R2_001.fastq.gz This is cutadapt 3.4 with Python 3.8.8 Command line parameters: --cores 1 --error-rate 0.1 --times 1 --overlap 3 --minimum-length 1 -o /var/folders/d7/0rpznrmn0rvfhz7qb56q0f2h0000gn/T/q2-CasavaOneEightSingleLanePerSampleDirFmt-oi5gnzse/31_S31_L001_R1_001.fastq.gz -p /var/folders/d7/0rpznrmn0rvfhz7qb56q0f2h0000gn/T/q2-CasavaOneEightSingleLanePerSampleDirFmt-oi5gnzse/31_S31_L001_R2_001.fastq.gz --adapter AMCVGGATTAGATACCCBG -A ACGTCATCCCCACCTTCC /var/folders/d7/0rpznrmn0rvfhz7qb56q0f2h0000gn/T/qiime2-archive-j16qc0cz/a04b10c8-5b78-4949-bb1f-7a895e9185ac/data/31_S31_L001_R1_001.fastq.gz /var/folders/d7/0rpznrmn0rvfhz7qb56q0f2h0000gn/T/qiime2-archive-j16qc0cz/a04b10c8-5b78-4949-bb1f-7a895e9185ac/data/31_S31_L001_R2_001.fastq.gz Processing reads on 1 core in paired-end mode ... [ 8=----] 00:00:16 682,181 reads @ 23.6 µs/read; 2.54 M reads/minute Finished in 16.12 s (24 µs/read; 2.54 M reads/minute). === Summary === Total read pairs processed: 682,181 Read 1 with adapter: 681,209 (99.9%) Read 2 with adapter: 676,905 (99.2%) Pairs that were too short: 681,994 (100.0%) Pairs written (passing filters): 187 (0.0%) Total basepairs processed: 340,042,833 bp Read 1: 170,073,610 bp Read 2: 169,969,223 bp Total written (filtered): 86,828 bp (0.0%) Read 1: 41,568 bp Read 2: 45,260 bp === First read: Adapter 1 === Sequence: AMCVGGATTAGATACCCBG; Type: regular 3'; Length: 19; Trimmed: 681209 times No. of allowed errors: 1-9 bp: 0; 10-19 bp: 1 Bases preceding removed adapters: A: 0.1% C: 0.0% G: 0.1% T: 0.0% none/other: 99.8% Overview of removed sequences length count expect max.err error counts 3 4 10659.1 0 4 4 16 2664.8 0 16 5 1 666.2 0 1 6 1 166.5 0 1 35 62 0.0 1 61 1 36 136 0.0 1 135 1 37 78 0.0 1 77 1 38 6 0.0 1 6 39 20 0.0 1 20 40 549 0.0 1 534 15 41 636 0.0 1 618 18 42 582 0.0 1 575 7 43 135 0.0 1 130 5 44 11 0.0 1 11 45 7 0.0 1 7 46 2 0.0 1 2 50 2 0.0 1 2 53 1 0.0 1 1 59 24 0.0 1 21 3 60 35 0.0 1 35 61 15 0.0 1 15 62 2 0.0 1 2 66 1 0.0 1 1 69 1 0.0 1 1 71 3 0.0 1 3 72 2 0.0 1 2 77 7 0.0 1 7 78 2 0.0 1 2 90 1 0.0 1 1 91 1 0.0 1 1 95 1 0.0 1 1 96 3 0.0 1 3 97 7 0.0 1 6 1 98 1 0.0 1 1 99 4 0.0 1 4 102 1 0.0 1 1 103 1 0.0 1 1 104 1 0.0 1 1 106 2 0.0 1 2 107 2 0.0 1 2 109 1 0.0 1 1 110 12 0.0 1 11 1 111 550 0.0 1 542 8 112 191 0.0 1 188 3 113 20 0.0 1 19 1 114 1 0.0 1 1 121 36 0.0 1 36 122 9 0.0 1 9 123 18 0.0 1 15 3 124 145 0.0 1 141 4 125 33 0.0 1 33 126 6 0.0 1 6 127 1 0.0 1 1 130 1 0.0 1 1 133 2 0.0 1 2 134 3 0.0 1 2 1 136 1 0.0 1 1 137 2 0.0 1 2 138 46 0.0 1 45 1 139 53 0.0 1 53 140 11 0.0 1 11 141 2 0.0 1 1 1 143 1 0.0 1 1 144 1 0.0 1 1 147 1 0.0 1 1 148 1 0.0 1 1 149 3 0.0 1 3 150 1 0.0 1 1 154 1 0.0 1 1 155 6 0.0 1 6 156 38 0.0 1 35 3 157 10 0.0 1 10 158 3 0.0 1 3 159 1 0.0 1 1 160 5 0.0 1 5 161 11 0.0 1 11 162 29 0.0 1 29 163 23 0.0 1 21 2 164 2 0.0 1 2 166 2 0.0 1 2 167 10 0.0 1 9 1 168 40 0.0 1 40 169 192 0.0 1 184 8 170 73 0.0 1 72 1 171 7 0.0 1 7 173 2 0.0 1 2 174 7 0.0 1 7 175 1 0.0 1 1 177 2 0.0 1 2 178 4 0.0 1 4 179 2 0.0 1 2 180 182 0.0 1 181 1 181 49 0.0 1 48 1 182 6 0.0 1 6 183 2 0.0 1 2 185 1 0.0 1 0 1 187 3 0.0 1 3 188 1 0.0 1 1 189 2 0.0 1 2 192 4 0.0 1 4 193 3 0.0 1 3 194 4 0.0 1 4 195 2 0.0 1 2 196 6 0.0 1 6 197 3 0.0 1 3 198 2 0.0 1 1 1 201 2 0.0 1 2 205 1 0.0 1 1 206 1 0.0 1 0 1 207 11 0.0 1 11 208 25 0.0 1 25 209 9 0.0 1 8 1 210 4 0.0 1 4 211 2 0.0 1 2 212 3 0.0 1 3 213 3 0.0 1 3 214 2 0.0 1 2 215 6 0.0 1 3 3 216 4 0.0 1 3 1 217 6 0.0 1 6 218 2 0.0 1 2 219 13 0.0 1 7 6 220 654 0.0 1 638 16 221 1128 0.0 1 1101 27 222 292 0.0 1 283 9 223 27 0.0 1 27 224 3 0.0 1 3 225 18 0.0 1 18 226 2 0.0 1 2 227 6 0.0 1 6 228 3 0.0 1 3 230 5 0.0 1 5 231 11 0.0 1 10 1 232 5 0.0 1 5 233 4 0.0 1 4 235 1 0.0 1 1 236 4 0.0 1 4 237 4 0.0 1 4 238 5 0.0 1 4 1 239 5 0.0 1 5 240 3 0.0 1 3 241 90 0.0 1 88 2 242 118 0.0 1 118 243 200 0.0 1 196 4 244 83 0.0 1 78 5 245 46 0.0 1 46 246 90 0.0 1 87 3 247 423 0.0 1 401 22 248 13209 0.0 1 12866 343 249 84944 0.0 1 83223 1721 250 161726 0.0 1 158475 3251 251 413747 0.0 1 405626 8121 === Second read: Adapter 2 === Sequence: ACGTCATCCCCACCTTCC; Type: regular 3'; Length: 18; Trimmed: 676905 times No. of allowed errors: 1-9 bp: 0; 10-18 bp: 1 Bases preceding removed adapters: A: 0.0% C: 0.0% G: 0.1% T: 0.0% none/other: 99.9% Overview of removed sequences length count expect max.err error counts 3 44 10659.1 0 44 9 1 2.6 0 1 10 1 0.7 1 0 1 35 59 0.0 1 51 8 36 131 0.0 1 124 7 37 72 0.0 1 69 3 38 5 0.0 1 5 39 20 0.0 1 6 14 40 532 0.0 1 515 17 41 632 0.0 1 604 28 42 559 0.0 1 544 15 43 136 0.0 1 129 7 44 15 0.0 1 15 45 6 0.0 1 6 46 2 0.0 1 2 50 2 0.0 1 2 53 2 0.0 1 2 58 1 0.0 1 1 59 23 0.0 1 23 60 29 0.0 1 27 2 61 13 0.0 1 12 1 62 1 0.0 1 1 66 1 0.0 1 1 69 1 0.0 1 1 71 2 0.0 1 2 72 1 0.0 1 1 77 7 0.0 1 7 78 2 0.0 1 2 85 1 0.0 1 0 1 86 1 0.0 1 0 1 90 1 0.0 1 0 1 91 1 0.0 1 1 93 1 0.0 1 0 1 96 3 0.0 1 3 97 10 0.0 1 8 2 98 1 0.0 1 1 99 2 0.0 1 2 102 1 0.0 1 1 103 1 0.0 1 1 106 2 0.0 1 1 1 107 3 0.0 1 2 1 109 1 0.0 1 1 110 12 0.0 1 6 6 111 544 0.0 1 530 14 112 186 0.0 1 181 5 113 20 0.0 1 19 1 114 2 0.0 1 2 121 37 0.0 1 35 2 122 7 0.0 1 7 123 18 0.0 1 16 2 124 145 0.0 1 142 3 125 33 0.0 1 33 126 6 0.0 1 6 127 1 0.0 1 1 130 1 0.0 1 1 133 2 0.0 1 2 134 3 0.0 1 1 2 136 1 0.0 1 1 137 2 0.0 1 2 138 46 0.0 1 42 4 139 52 0.0 1 50 2 140 11 0.0 1 11 141 3 0.0 1 2 1 142 7 0.0 1 0 7 143 1 0.0 1 1 144 3 0.0 1 1 2 146 3 0.0 1 3 147 4 0.0 1 4 148 1 0.0 1 1 149 3 0.0 1 3 150 1 0.0 1 1 153 1 0.0 1 1 154 1 0.0 1 0 1 155 7 0.0 1 7 156 36 0.0 1 36 157 11 0.0 1 10 1 158 2 0.0 1 2 159 1 0.0 1 1 160 5 0.0 1 5 161 11 0.0 1 9 2 162 27 0.0 1 27 163 23 0.0 1 23 164 2 0.0 1 2 166 3 0.0 1 3 167 10 0.0 1 7 3 168 42 0.0 1 40 2 169 191 0.0 1 187 4 170 73 0.0 1 71 2 171 8 0.0 1 7 1 173 2 0.0 1 2 174 13 0.0 1 12 1 175 1 0.0 1 1 177 2 0.0 1 2 178 6 0.0 1 5 1 179 2 0.0 1 1 1 180 184 0.0 1 179 5 181 40 0.0 1 39 1 182 7 0.0 1 6 1 183 1 0.0 1 1 184 2 0.0 1 2 185 2 0.0 1 2 187 4 0.0 1 4 188 1 0.0 1 0 1 191 7 0.0 1 7 192 4 0.0 1 3 1 193 3 0.0 1 3 194 4 0.0 1 4 195 3 0.0 1 3 196 6 0.0 1 6 197 4 0.0 1 4 198 4 0.0 1 4 199 1 0.0 1 1 201 2 0.0 1 2 203 1 0.0 1 1 204 3 0.0 1 3 205 6 0.0 1 6 206 2 0.0 1 2 207 21 0.0 1 20 1 208 25 0.0 1 25 209 10 0.0 1 10 210 5 0.0 1 4 1 211 1 0.0 1 1 212 1 0.0 1 1 213 2 0.0 1 2 214 2 0.0 1 1 1 215 6 0.0 1 6 216 4 0.0 1 4 217 6 0.0 1 6 218 7 0.0 1 7 219 15 0.0 1 9 6 220 642 0.0 1 630 12 221 1096 0.0 1 1072 24 222 290 0.0 1 283 7 223 29 0.0 1 29 224 4 0.0 1 4 225 19 0.0 1 18 1 226 2 0.0 1 2 227 3 0.0 1 3 228 3 0.0 1 3 230 5 0.0 1 4 1 231 7 0.0 1 7 232 3 0.0 1 2 1 233 2 0.0 1 2 235 2 0.0 1 2 236 4 0.0 1 4 237 1 0.0 1 1 238 1 0.0 1 1 239 1 0.0 1 1 240 2 0.0 1 2 241 3 0.0 1 1 2 242 2 0.0 1 2 243 1 0.0 1 1 244 6 0.0 1 6 245 3 0.0 1 2 1 246 6 0.0 1 4 2 247 14 0.0 1 12 2 248 1720 0.0 1 1632 88 249 18625 0.0 1 17760 865 250 450122 0.0 1 436438 13684 251 199927 0.0 1 193223 6704 Command: cutadapt --cores 1 --error-rate 0.1 --times 1 --overlap 3 --minimum-length 1 -o /var/folders/d7/0rpznrmn0rvfhz7qb56q0f2h0000gn/T/q2-CasavaOneEightSingleLanePerSampleDirFmt-oi5gnzse/46_S46_L001_R1_001.fastq.gz -p /var/folders/d7/0rpznrmn0rvfhz7qb56q0f2h0000gn/T/q2-CasavaOneEightSingleLanePerSampleDirFmt-oi5gnzse/46_S46_L001_R2_001.fastq.gz --adapter AMCVGGATTAGATACCCBG -A ACGTCATCCCCACCTTCC /var/folders/d7/0rpznrmn0rvfhz7qb56q0f2h0000gn/T/qiime2-archive-j16qc0cz/a04b10c8-5b78-4949-bb1f-7a895e9185ac/data/46_S46_L001_R1_001.fastq.gz /var/folders/d7/0rpznrmn0rvfhz7qb56q0f2h0000gn/T/qiime2-archive-j16qc0cz/a04b10c8-5b78-4949-bb1f-7a895e9185ac/data/46_S46_L001_R2_001.fastq.gz This is cutadapt 3.4 with Python 3.8.8 Command line parameters: --cores 1 --error-rate 0.1 --times 1 --overlap 3 --minimum-length 1 -o /var/folders/d7/0rpznrmn0rvfhz7qb56q0f2h0000gn/T/q2-CasavaOneEightSingleLanePerSampleDirFmt-oi5gnzse/46_S46_L001_R1_001.fastq.gz -p /var/folders/d7/0rpznrmn0rvfhz7qb56q0f2h0000gn/T/q2-CasavaOneEightSingleLanePerSampleDirFmt-oi5gnzse/46_S46_L001_R2_001.fastq.gz --adapter AMCVGGATTAGATACCCBG -A ACGTCATCCCCACCTTCC /var/folders/d7/0rpznrmn0rvfhz7qb56q0f2h0000gn/T/qiime2-archive-j16qc0cz/a04b10c8-5b78-4949-bb1f-7a895e9185ac/data/46_S46_L001_R1_001.fastq.gz /var/folders/d7/0rpznrmn0rvfhz7qb56q0f2h0000gn/T/qiime2-archive-j16qc0cz/a04b10c8-5b78-4949-bb1f-7a895e9185ac/data/46_S46_L001_R2_001.fastq.gz Processing reads on 1 core in paired-end mode ... [ 8=-----] 00:00:13 567,334 reads @ 24.6 µs/read; 2.44 M reads/minute Finished in 13.96 s (25 µs/read; 2.44 M reads/minute). === Summary === Total read pairs processed: 567,334 Read 1 with adapter: 566,295 (99.8%) Read 2 with adapter: 564,075 (99.4%) Pairs that were too short: 567,175 (100.0%) Pairs written (passing filters): 159 (0.0%) Total basepairs processed: 281,533,185 bp Read 1: 140,837,853 bp Read 2: 140,695,332 bp Total written (filtered): 74,066 bp (0.0%) Read 1: 36,504 bp Read 2: 37,562 bp === First read: Adapter 1 === Sequence: AMCVGGATTAGATACCCBG; Type: regular 3'; Length: 19; Trimmed: 566295 times No. of allowed errors: 1-9 bp: 0; 10-19 bp: 1 Bases preceding removed adapters: A: 0.1% C: 0.0% G: 0.1% T: 0.0% none/other: 99.8% Overview of removed sequences length count expect max.err error counts 3 4 8864.6 0 4 4 28 2216.1 0 28 5 1 554.0 0 1 7 1 34.6 0 1 35 16 0.0 1 15 1 36 48 0.0 1 47 1 37 24 0.0 1 24 38 14 0.0 1 14 39 9 0.0 1 8 1 40 73 0.0 1 70 3 41 125 0.0 1 121 4 42 295 0.0 1 291 4 43 109 0.0 1 107 2 44 18 0.0 1 15 3 45 6 0.0 1 5 1 46 1 0.0 1 1 47 2 0.0 1 2 48 16 0.0 1 15 1 49 36 0.0 1 35 1 50 16 0.0 1 15 1 51 13 0.0 1 11 2 52 3 0.0 1 3 53 1 0.0 1 1 54 1 0.0 1 1 55 1 0.0 1 1 57 1 0.0 1 1 58 1 0.0 1 1 60 5 0.0 1 5 61 1 0.0 1 1 62 2 0.0 1 2 63 2 0.0 1 1 1 69 2 0.0 1 2 75 1 0.0 1 1 81 2 0.0 1 2 89 1 0.0 1 1 92 1 0.0 1 1 94 1 0.0 1 1 95 1 0.0 1 1 97 1 0.0 1 1 101 2 0.0 1 2 103 1 0.0 1 1 104 4 0.0 1 4 105 1 0.0 1 1 106 2 0.0 1 2 107 1 0.0 1 1 108 5 0.0 1 4 1 109 4 0.0 1 2 2 110 61 0.0 1 40 21 111 2331 0.0 1 2278 53 112 921 0.0 1 897 24 113 131 0.0 1 128 3 114 11 0.0 1 11 117 1 0.0 1 1 118 1 0.0 1 1 119 12 0.0 1 12 120 5 0.0 1 5 121 9 0.0 1 9 122 3 0.0 1 3 124 2 0.0 1 1 1 125 2 0.0 1 2 126 4 0.0 1 4 127 8 0.0 1 8 128 11 0.0 1 11 129 3 0.0 1 3 130 1 0.0 1 1 132 1 0.0 1 1 133 6 0.0 1 5 1 134 26 0.0 1 23 3 135 42 0.0 1 40 2 136 63 0.0 1 63 137 25 0.0 1 25 138 2 0.0 1 2 139 2 0.0 1 2 140 2 0.0 1 2 141 4 0.0 1 4 142 1 0.0 1 1 146 1 0.0 1 1 149 2 0.0 1 2 150 1 0.0 1 1 151 1 0.0 1 1 152 2 0.0 1 2 157 1 0.0 1 1 158 1 0.0 1 1 159 28 0.0 1 27 1 160 54 0.0 1 54 161 29 0.0 1 28 1 162 12 0.0 1 10 2 163 19 0.0 1 19 164 20 0.0 1 20 165 7 0.0 1 6 1 166 1 0.0 1 1 167 18 0.0 1 18 168 202 0.0 1 186 16 169 601 0.0 1 592 9 170 160 0.0 1 156 4 171 9 0.0 1 8 1 172 4 0.0 1 4 173 1 0.0 1 1 174 8 0.0 1 8 175 4 0.0 1 4 176 2 0.0 1 2 177 19 0.0 1 19 178 2 0.0 1 2 179 4 0.0 1 1 3 180 66 0.0 1 66 181 21 0.0 1 21 182 3 0.0 1 2 1 183 7 0.0 1 7 184 1 0.0 1 1 185 1 0.0 1 1 187 23 0.0 1 21 2 188 10 0.0 1 9 1 189 4 0.0 1 4 190 18 0.0 1 18 191 29 0.0 1 29 192 22 0.0 1 22 193 27 0.0 1 24 3 194 22 0.0 1 20 2 195 10 0.0 1 10 196 9 0.0 1 8 1 197 23 0.0 1 23 198 21 0.0 1 21 199 14 0.0 1 14 200 3 0.0 1 3 201 1 0.0 1 1 202 3 0.0 1 3 203 32 0.0 1 25 7 204 923 0.0 1 906 17 205 279 0.0 1 269 10 206 81 0.0 1 80 1 207 8 0.0 1 8 208 1 0.0 1 1 209 4 0.0 1 4 210 12 0.0 1 10 2 211 100 0.0 1 100 212 30 0.0 1 28 2 213 2 0.0 1 2 214 1 0.0 1 1 215 1 0.0 1 1 216 18 0.0 1 18 217 25 0.0 1 23 2 218 29 0.0 1 26 3 219 126 0.0 1 93 33 220 4061 0.0 1 3928 133 221 6511 0.0 1 6371 140 222 1766 0.0 1 1727 39 223 174 0.0 1 169 5 224 3 0.0 1 3 225 4 0.0 1 4 226 3 0.0 1 3 227 1 0.0 1 1 228 3 0.0 1 1 2 229 4 0.0 1 4 230 5 0.0 1 5 231 15 0.0 1 13 2 232 2 0.0 1 2 233 4 0.0 1 4 234 6 0.0 1 6 235 3 0.0 1 3 236 8 0.0 1 8 237 1 0.0 1 1 238 4 0.0 1 4 239 2 0.0 1 2 240 7 0.0 1 6 1 241 15 0.0 1 15 242 14 0.0 1 14 243 16 0.0 1 15 1 244 31 0.0 1 31 245 61 0.0 1 60 1 246 117 0.0 1 113 4 247 805 0.0 1 771 34 248 10976 0.0 1 10669 307 249 62560 0.0 1 61206 1354 250 131213 0.0 1 128201 3012 251 340083 0.0 1 332390 7693 === Second read: Adapter 2 === Sequence: ACGTCATCCCCACCTTCC; Type: regular 3'; Length: 18; Trimmed: 564075 times No. of allowed errors: 1-9 bp: 0; 10-18 bp: 1 Bases preceding removed adapters: A: 0.1% C: 0.0% G: 0.1% T: 0.0% none/other: 99.7% Overview of removed sequences length count expect max.err error counts 3 46 8864.6 0 46 4 1 2216.1 0 1 35 12 0.0 1 10 2 36 41 0.0 1 37 4 37 21 0.0 1 20 1 38 15 0.0 1 14 1 39 9 0.0 1 9 40 75 0.0 1 71 4 41 125 0.0 1 120 5 42 299 0.0 1 292 7 43 108 0.0 1 103 5 44 19 0.0 1 19 45 6 0.0 1 6 46 2 0.0 1 2 47 2 0.0 1 2 48 17 0.0 1 16 1 49 36 0.0 1 35 1 50 15 0.0 1 15 51 13 0.0 1 13 52 3 0.0 1 3 53 1 0.0 1 1 55 1 0.0 1 1 57 1 0.0 1 1 60 6 0.0 1 5 1 61 1 0.0 1 1 63 1 0.0 1 1 69 2 0.0 1 2 81 2 0.0 1 1 1 84 1 0.0 1 0 1 89 1 0.0 1 1 94 1 0.0 1 1 95 2 0.0 1 0 2 96 1 0.0 1 0 1 97 7 0.0 1 1 6 101 2 0.0 1 2 102 2 0.0 1 0 2 103 1 0.0 1 1 104 4 0.0 1 4 105 1 0.0 1 1 106 2 0.0 1 2 107 1 0.0 1 1 108 4 0.0 1 4 109 4 0.0 1 2 2 110 56 0.0 1 32 24 111 2304 0.0 1 2242 62 112 932 0.0 1 900 32 113 129 0.0 1 129 114 13 0.0 1 13 117 1 0.0 1 0 1 118 1 0.0 1 1 119 12 0.0 1 12 120 5 0.0 1 5 121 8 0.0 1 8 122 3 0.0 1 2 1 124 2 0.0 1 2 125 2 0.0 1 2 126 3 0.0 1 3 127 8 0.0 1 8 128 11 0.0 1 11 129 3 0.0 1 3 130 1 0.0 1 1 132 1 0.0 1 1 133 7 0.0 1 7 134 26 0.0 1 26 135 42 0.0 1 40 2 136 64 0.0 1 62 2 137 26 0.0 1 24 2 138 3 0.0 1 3 139 2 0.0 1 2 140 2 0.0 1 2 141 4 0.0 1 4 142 1 0.0 1 1 144 4 0.0 1 0 4 146 4 0.0 1 4 147 1 0.0 1 1 149 2 0.0 1 2 150 1 0.0 1 1 151 1 0.0 1 1 152 2 0.0 1 2 157 1 0.0 1 1 158 1 0.0 1 1 159 30 0.0 1 30 160 53 0.0 1 53 161 27 0.0 1 26 1 162 12 0.0 1 10 2 163 20 0.0 1 19 1 164 22 0.0 1 22 165 8 0.0 1 8 166 1 0.0 1 1 167 17 0.0 1 15 2 168 204 0.0 1 194 10 169 601 0.0 1 585 16 170 159 0.0 1 152 7 171 11 0.0 1 11 172 4 0.0 1 4 173 2 0.0 1 2 174 8 0.0 1 7 1 175 4 0.0 1 3 1 176 2 0.0 1 2 177 18 0.0 1 18 178 2 0.0 1 2 179 2 0.0 1 1 1 180 69 0.0 1 68 1 181 18 0.0 1 18 182 3 0.0 1 3 183 4 0.0 1 3 1 184 1 0.0 1 1 185 1 0.0 1 1 187 21 0.0 1 21 188 12 0.0 1 12 189 4 0.0 1 4 190 19 0.0 1 18 1 191 37 0.0 1 35 2 192 21 0.0 1 21 193 27 0.0 1 27 194 22 0.0 1 21 1 195 10 0.0 1 10 196 7 0.0 1 7 197 25 0.0 1 24 1 198 21 0.0 1 21 199 14 0.0 1 14 200 3 0.0 1 3 201 2 0.0 1 2 202 3 0.0 1 3 203 34 0.0 1 21 13 204 907 0.0 1 887 20 205 280 0.0 1 273 7 206 83 0.0 1 83 207 16 0.0 1 16 208 3 0.0 1 3 209 4 0.0 1 3 1 210 10 0.0 1 9 1 211 98 0.0 1 97 1 212 31 0.0 1 30 1 213 1 0.0 1 1 214 3 0.0 1 2 1 215 1 0.0 1 1 216 17 0.0 1 17 217 27 0.0 1 25 2 218 30 0.0 1 29 1 219 124 0.0 1 78 46 220 3984 0.0 1 3809 175 221 6443 0.0 1 6310 133 222 1747 0.0 1 1711 36 223 169 0.0 1 163 6 224 5 0.0 1 5 225 4 0.0 1 4 226 3 0.0 1 3 228 3 0.0 1 3 229 2 0.0 1 2 230 4 0.0 1 4 231 13 0.0 1 13 232 2 0.0 1 2 233 2 0.0 1 1 1 234 6 0.0 1 6 235 2 0.0 1 2 236 8 0.0 1 8 237 4 0.0 1 4 238 4 0.0 1 3 1 239 3 0.0 1 3 240 4 0.0 1 4 241 5 0.0 1 4 1 242 5 0.0 1 5 243 4 0.0 1 4 244 27 0.0 1 25 2 245 12 0.0 1 12 246 10 0.0 1 6 4 247 6 0.0 1 4 2 248 959 0.0 1 891 68 249 11077 0.0 1 10560 517 250 416514 0.0 1 404849 11665 251 115221 0.0 1 111138 4083 Command: cutadapt --cores 1 --error-rate 0.1 --times 1 --overlap 3 --minimum-length 1 -o /var/folders/d7/0rpznrmn0rvfhz7qb56q0f2h0000gn/T/q2-CasavaOneEightSingleLanePerSampleDirFmt-oi5gnzse/55_S52_L001_R1_001.fastq.gz -p /var/folders/d7/0rpznrmn0rvfhz7qb56q0f2h0000gn/T/q2-CasavaOneEightSingleLanePerSampleDirFmt-oi5gnzse/55_S52_L001_R2_001.fastq.gz --adapter AMCVGGATTAGATACCCBG -A ACGTCATCCCCACCTTCC /var/folders/d7/0rpznrmn0rvfhz7qb56q0f2h0000gn/T/qiime2-archive-j16qc0cz/a04b10c8-5b78-4949-bb1f-7a895e9185ac/data/55_S52_L001_R1_001.fastq.gz /var/folders/d7/0rpznrmn0rvfhz7qb56q0f2h0000gn/T/qiime2-archive-j16qc0cz/a04b10c8-5b78-4949-bb1f-7a895e9185ac/data/55_S52_L001_R2_001.fastq.gz This is cutadapt 3.4 with Python 3.8.8 Command line parameters: --cores 1 --error-rate 0.1 --times 1 --overlap 3 --minimum-length 1 -o /var/folders/d7/0rpznrmn0rvfhz7qb56q0f2h0000gn/T/q2-CasavaOneEightSingleLanePerSampleDirFmt-oi5gnzse/55_S52_L001_R1_001.fastq.gz -p /var/folders/d7/0rpznrmn0rvfhz7qb56q0f2h0000gn/T/q2-CasavaOneEightSingleLanePerSampleDirFmt-oi5gnzse/55_S52_L001_R2_001.fastq.gz --adapter AMCVGGATTAGATACCCBG -A ACGTCATCCCCACCTTCC /var/folders/d7/0rpznrmn0rvfhz7qb56q0f2h0000gn/T/qiime2-archive-j16qc0cz/a04b10c8-5b78-4949-bb1f-7a895e9185ac/data/55_S52_L001_R1_001.fastq.gz /var/folders/d7/0rpznrmn0rvfhz7qb56q0f2h0000gn/T/qiime2-archive-j16qc0cz/a04b10c8-5b78-4949-bb1f-7a895e9185ac/data/55_S52_L001_R2_001.fastq.gz Processing reads on 1 core in paired-end mode ... [ 8=---] 00:00:18 791,852 reads @ 23.8 µs/read; 2.52 M reads/minute Finished in 18.85 s (24 µs/read; 2.52 M reads/minute). === Summary === Total read pairs processed: 791,852 Read 1 with adapter: 789,486 (99.7%) Read 2 with adapter: 789,076 (99.6%) Pairs that were too short: 791,708 (100.0%) Pairs written (passing filters): 144 (0.0%) Total basepairs processed: 396,604,324 bp Read 1: 198,652,225 bp Read 2: 197,952,099 bp Total written (filtered): 70,690 bp (0.0%) Read 1: 35,361 bp Read 2: 35,329 bp === First read: Adapter 1 === Sequence: AMCVGGATTAGATACCCBG; Type: regular 3'; Length: 19; Trimmed: 789486 times No. of allowed errors: 1-9 bp: 0; 10-19 bp: 1 Bases preceding removed adapters: A: 0.1% C: 0.0% G: 0.1% T: 0.0% none/other: 99.8% Overview of removed sequences length count expect max.err error counts 4 16 3093.2 0 16 5 9 773.3 0 9 35 1 0.0 1 1 36 1 0.0 1 1 37 1 0.0 1 1 39 1 0.0 1 1 40 24 0.0 1 20 4 41 54 0.0 1 48 6 42 76 0.0 1 70 6 43 23 0.0 1 22 1 44 2 0.0 1 2 95 2 0.0 1 1 1 101 2 0.0 1 2 175 1 0.0 1 1 207 1 0.0 1 1 213 1 0.0 1 1 215 3 0.0 1 3 216 1 0.0 1 1 219 1 0.0 1 1 224 1 0.0 1 1 225 1 0.0 1 1 228 1 0.0 1 1 231 1 0.0 1 1 233 1 0.0 1 1 235 2 0.0 1 2 237 1 0.0 1 1 239 4 0.0 1 4 240 1 0.0 1 1 241 1 0.0 1 1 243 4 0.0 1 4 244 4 0.0 1 3 1 245 6 0.0 1 5 1 246 13 0.0 1 12 1 247 6680 0.0 1 6426 254 248 2804 0.0 1 2683 121 249 10813 0.0 1 10200 613 250 6214 0.0 1 4544 1670 251 762714 0.0 1 738504 24210 === Second read: Adapter 2 === Sequence: ACGTCATCCCCACCTTCC; Type: regular 3'; Length: 18; Trimmed: 789076 times No. of allowed errors: 1-9 bp: 0; 10-18 bp: 1 Bases preceding removed adapters: A: 0.3% C: 0.0% G: 0.4% T: 0.0% none/other: 99.3% Overview of removed sequences length count expect max.err error counts 3 12 12372.7 0 12 4 1 3093.2 0 1 35 1 0.0 1 1 36 1 0.0 1 1 37 1 0.0 1 1 40 26 0.0 1 25 1 41 54 0.0 1 50 4 42 77 0.0 1 77 43 25 0.0 1 24 1 44 2 0.0 1 2 85 1 0.0 1 0 1 100 1 0.0 1 0 1 132 1 0.0 1 0 1 137 4 0.0 1 0 4 144 7 0.0 1 0 7 146 6 0.0 1 5 1 163 1 0.0 1 0 1 175 1 0.0 1 1 204 4 0.0 1 4 207 1 0.0 1 1 208 1 0.0 1 0 1 214 1 0.0 1 1 215 2 0.0 1 2 219 2 0.0 1 1 1 220 12 0.0 1 12 221 1 0.0 1 1 223 1 0.0 1 1 226 1 0.0 1 1 232 1 0.0 1 1 234 2 0.0 1 2 237 1 0.0 1 1 238 1 0.0 1 1 240 1 0.0 1 1 241 1 0.0 1 1 243 1 0.0 1 0 1 246 52 0.0 1 47 5 247 14 0.0 1 14 248 48 0.0 1 31 17 249 7228 0.0 1 2377 4851 250 744182 0.0 1 729830 14352 251 37296 0.0 1 34437 2859 Command: cutadapt --cores 1 --error-rate 0.1 --times 1 --overlap 3 --minimum-length 1 -o /var/folders/d7/0rpznrmn0rvfhz7qb56q0f2h0000gn/T/q2-CasavaOneEightSingleLanePerSampleDirFmt-oi5gnzse/60_S57_L001_R1_001.fastq.gz -p /var/folders/d7/0rpznrmn0rvfhz7qb56q0f2h0000gn/T/q2-CasavaOneEightSingleLanePerSampleDirFmt-oi5gnzse/60_S57_L001_R2_001.fastq.gz --adapter AMCVGGATTAGATACCCBG -A ACGTCATCCCCACCTTCC /var/folders/d7/0rpznrmn0rvfhz7qb56q0f2h0000gn/T/qiime2-archive-j16qc0cz/a04b10c8-5b78-4949-bb1f-7a895e9185ac/data/60_S57_L001_R1_001.fastq.gz /var/folders/d7/0rpznrmn0rvfhz7qb56q0f2h0000gn/T/qiime2-archive-j16qc0cz/a04b10c8-5b78-4949-bb1f-7a895e9185ac/data/60_S57_L001_R2_001.fastq.gz This is cutadapt 3.4 with Python 3.8.8 Command line parameters: --cores 1 --error-rate 0.1 --times 1 --overlap 3 --minimum-length 1 -o /var/folders/d7/0rpznrmn0rvfhz7qb56q0f2h0000gn/T/q2-CasavaOneEightSingleLanePerSampleDirFmt-oi5gnzse/60_S57_L001_R1_001.fastq.gz -p /var/folders/d7/0rpznrmn0rvfhz7qb56q0f2h0000gn/T/q2-CasavaOneEightSingleLanePerSampleDirFmt-oi5gnzse/60_S57_L001_R2_001.fastq.gz --adapter AMCVGGATTAGATACCCBG -A ACGTCATCCCCACCTTCC /var/folders/d7/0rpznrmn0rvfhz7qb56q0f2h0000gn/T/qiime2-archive-j16qc0cz/a04b10c8-5b78-4949-bb1f-7a895e9185ac/data/60_S57_L001_R1_001.fastq.gz /var/folders/d7/0rpznrmn0rvfhz7qb56q0f2h0000gn/T/qiime2-archive-j16qc0cz/a04b10c8-5b78-4949-bb1f-7a895e9185ac/data/60_S57_L001_R2_001.fastq.gz Processing reads on 1 core in paired-end mode ... [ 8=---] 00:00:17 743,960 reads @ 23.9 µs/read; 2.51 M reads/minute Finished in 17.79 s (24 µs/read; 2.51 M reads/minute). === Summary === Total read pairs processed: 743,960 Read 1 with adapter: 742,963 (99.9%) Read 2 with adapter: 739,549 (99.4%) Pairs that were too short: 743,798 (100.0%) Pairs written (passing filters): 162 (0.0%) Total basepairs processed: 370,899,744 bp Read 1: 185,493,147 bp Read 2: 185,406,597 bp Total written (filtered): 60,287 bp (0.0%) Read 1: 29,096 bp Read 2: 31,191 bp === First read: Adapter 1 === Sequence: AMCVGGATTAGATACCCBG; Type: regular 3'; Length: 19; Trimmed: 742963 times No. of allowed errors: 1-9 bp: 0; 10-19 bp: 1 Bases preceding removed adapters: A: 0.1% C: 0.0% G: 0.1% T: 0.0% none/other: 99.8% Overview of removed sequences length count expect max.err error counts 3 6 11624.4 0 6 4 13 2906.1 0 13 5 1 726.5 0 1 35 260 0.0 1 253 7 36 467 0.0 1 451 16 37 178 0.0 1 170 8 38 27 0.0 1 27 39 104 0.0 1 97 7 40 657 0.0 1 647 10 41 822 0.0 1 801 21 42 944 0.0 1 926 18 43 245 0.0 1 241 4 44 25 0.0 1 24 1 45 13 0.0 1 13 46 1 0.0 1 1 47 1 0.0 1 1 53 4 0.0 1 4 54 9 0.0 1 9 55 4 0.0 1 4 62 1 0.0 1 1 69 1 0.0 1 1 74 1 0.0 1 0 1 80 1 0.0 1 1 91 1 0.0 1 1 94 1 0.0 1 1 96 1 0.0 1 0 1 97 1 0.0 1 1 103 2 0.0 1 2 107 1 0.0 1 1 114 1 0.0 1 1 118 3 0.0 1 3 119 1 0.0 1 1 120 2 0.0 1 2 121 2 0.0 1 2 124 3 0.0 1 3 125 2 0.0 1 2 126 2 0.0 1 2 127 1 0.0 1 1 134 1 0.0 1 1 135 1 0.0 1 1 136 2 0.0 1 2 137 14 0.0 1 14 138 10 0.0 1 10 141 13 0.0 1 13 142 2 0.0 1 2 148 2 0.0 1 2 151 1 0.0 1 1 152 1 0.0 1 1 153 8 0.0 1 8 154 130 0.0 1 128 2 155 163 0.0 1 161 2 156 63 0.0 1 59 4 157 3 0.0 1 3 160 1 0.0 1 1 161 2 0.0 1 2 162 1 0.0 1 1 164 1 0.0 1 0 1 174 1 0.0 1 1 175 1 0.0 1 1 176 1 0.0 1 1 179 1 0.0 1 1 180 2 0.0 1 2 181 1 0.0 1 1 183 2 0.0 1 2 185 2 0.0 1 2 187 2 0.0 1 2 188 2 0.0 1 2 189 1 0.0 1 1 192 1 0.0 1 1 195 1 0.0 1 1 196 1 0.0 1 1 197 1 0.0 1 1 198 1 0.0 1 1 199 5 0.0 1 3 2 200 5 0.0 1 5 201 3 0.0 1 2 1 202 2 0.0 1 2 203 1 0.0 1 1 205 2 0.0 1 2 207 2 0.0 1 2 208 3 0.0 1 3 209 1 0.0 1 1 210 1 0.0 1 1 212 3 0.0 1 3 213 11 0.0 1 10 1 214 26 0.0 1 26 215 6 0.0 1 6 218 4 0.0 1 4 219 4 0.0 1 4 220 2 0.0 1 2 221 1 0.0 1 1 223 2 0.0 1 2 224 4 0.0 1 3 1 225 8 0.0 1 6 2 226 9 0.0 1 9 227 2 0.0 1 2 228 5 0.0 1 5 229 4 0.0 1 4 230 4 0.0 1 4 231 2 0.0 1 2 232 6 0.0 1 6 233 2 0.0 1 1 1 234 3 0.0 1 3 235 1 0.0 1 0 1 236 1 0.0 1 1 237 4 0.0 1 4 238 2 0.0 1 2 239 2 0.0 1 2 240 4 0.0 1 4 241 8 0.0 1 8 242 2 0.0 1 2 243 1 0.0 1 1 244 1 0.0 1 1 245 86 0.0 1 83 3 246 108 0.0 1 104 4 247 496 0.0 1 474 22 248 12201 0.0 1 11924 277 249 46552 0.0 1 45607 945 250 248841 0.0 1 244741 4100 251 430271 0.0 1 421950 8321 === Second read: Adapter 2 === Sequence: ACGTCATCCCCACCTTCC; Type: regular 3'; Length: 18; Trimmed: 739549 times No. of allowed errors: 1-9 bp: 0; 10-18 bp: 1 Bases preceding removed adapters: A: 0.0% C: 0.0% G: 0.1% T: 0.0% none/other: 99.9% Overview of removed sequences length count expect max.err error counts 3 17 11624.4 0 17 35 254 0.0 1 229 25 36 472 0.0 1 452 20 37 180 0.0 1 175 5 38 27 0.0 1 27 39 96 0.0 1 86 10 40 630 0.0 1 600 30 41 795 0.0 1 769 26 42 942 0.0 1 907 35 43 253 0.0 1 244 9 44 26 0.0 1 26 45 12 0.0 1 11 1 47 1 0.0 1 1 53 1 0.0 1 1 54 9 0.0 1 9 55 4 0.0 1 4 62 1 0.0 1 1 67 1 0.0 1 1 69 1 0.0 1 1 80 1 0.0 1 1 84 2 0.0 1 0 2 85 3 0.0 1 0 3 91 1 0.0 1 1 94 1 0.0 1 0 1 95 2 0.0 1 0 2 96 3 0.0 1 1 2 97 4 0.0 1 1 3 98 1 0.0 1 0 1 100 1 0.0 1 0 1 103 2 0.0 1 2 107 1 0.0 1 1 118 2 0.0 1 2 119 1 0.0 1 1 120 2 0.0 1 2 121 2 0.0 1 2 124 3 0.0 1 3 125 2 0.0 1 2 126 2 0.0 1 2 127 1 0.0 1 1 134 1 0.0 1 0 1 135 1 0.0 1 1 136 2 0.0 1 2 137 15 0.0 1 11 4 138 10 0.0 1 10 141 13 0.0 1 13 142 4 0.0 1 2 2 144 3 0.0 1 0 3 146 1 0.0 1 1 147 2 0.0 1 2 148 3 0.0 1 3 151 1 0.0 1 1 152 1 0.0 1 1 153 8 0.0 1 7 1 154 131 0.0 1 128 3 155 159 0.0 1 151 8 156 65 0.0 1 62 3 157 3 0.0 1 3 160 1 0.0 1 1 161 1 0.0 1 1 162 2 0.0 1 2 163 3 0.0 1 3 164 2 0.0 1 2 167 1 0.0 1 0 1 172 1 0.0 1 1 174 2 0.0 1 2 175 1 0.0 1 1 176 2 0.0 1 1 1 179 2 0.0 1 2 180 3 0.0 1 3 181 1 0.0 1 1 182 1 0.0 1 1 183 1 0.0 1 1 184 3 0.0 1 3 185 2 0.0 1 2 187 2 0.0 1 2 188 8 0.0 1 8 189 4 0.0 1 4 191 1 0.0 1 1 192 1 0.0 1 1 195 1 0.0 1 1 196 3 0.0 1 2 1 197 1 0.0 1 1 198 3 0.0 1 3 199 5 0.0 1 5 200 5 0.0 1 5 201 3 0.0 1 3 202 3 0.0 1 3 203 1 0.0 1 1 204 3 0.0 1 3 205 7 0.0 1 6 1 206 1 0.0 1 1 207 2 0.0 1 2 208 5 0.0 1 5 209 13 0.0 1 13 210 3 0.0 1 3 212 1 0.0 1 1 213 12 0.0 1 10 2 214 25 0.0 1 25 215 6 0.0 1 6 217 1 0.0 1 1 218 5 0.0 1 5 219 8 0.0 1 8 220 1 0.0 1 1 221 1 0.0 1 0 1 223 3 0.0 1 3 224 3 0.0 1 2 1 225 7 0.0 1 5 2 226 8 0.0 1 7 1 227 4 0.0 1 4 228 1 0.0 1 1 230 3 0.0 1 3 231 1 0.0 1 1 232 7 0.0 1 5 2 233 1 0.0 1 1 234 2 0.0 1 2 236 1 0.0 1 1 237 1 0.0 1 1 239 2 0.0 1 1 1 240 2 0.0 1 2 241 1 0.0 1 1 242 2 0.0 1 1 1 243 2 0.0 1 2 244 6 0.0 1 6 245 2 0.0 1 2 246 7 0.0 1 7 247 21 0.0 1 9 12 248 8310 0.0 1 8012 298 249 11641 0.0 1 11085 556 250 426967 0.0 1 414045 12922 251 288198 0.0 1 280542 7656 Command: cutadapt --cores 1 --error-rate 0.1 --times 1 --overlap 3 --minimum-length 1 -o /var/folders/d7/0rpznrmn0rvfhz7qb56q0f2h0000gn/T/q2-CasavaOneEightSingleLanePerSampleDirFmt-oi5gnzse/65_S62_L001_R1_001.fastq.gz -p /var/folders/d7/0rpznrmn0rvfhz7qb56q0f2h0000gn/T/q2-CasavaOneEightSingleLanePerSampleDirFmt-oi5gnzse/65_S62_L001_R2_001.fastq.gz --adapter AMCVGGATTAGATACCCBG -A ACGTCATCCCCACCTTCC /var/folders/d7/0rpznrmn0rvfhz7qb56q0f2h0000gn/T/qiime2-archive-j16qc0cz/a04b10c8-5b78-4949-bb1f-7a895e9185ac/data/65_S62_L001_R1_001.fastq.gz /var/folders/d7/0rpznrmn0rvfhz7qb56q0f2h0000gn/T/qiime2-archive-j16qc0cz/a04b10c8-5b78-4949-bb1f-7a895e9185ac/data/65_S62_L001_R2_001.fastq.gz This is cutadapt 3.4 with Python 3.8.8 Command line parameters: --cores 1 --error-rate 0.1 --times 1 --overlap 3 --minimum-length 1 -o /var/folders/d7/0rpznrmn0rvfhz7qb56q0f2h0000gn/T/q2-CasavaOneEightSingleLanePerSampleDirFmt-oi5gnzse/65_S62_L001_R1_001.fastq.gz -p /var/folders/d7/0rpznrmn0rvfhz7qb56q0f2h0000gn/T/q2-CasavaOneEightSingleLanePerSampleDirFmt-oi5gnzse/65_S62_L001_R2_001.fastq.gz --adapter AMCVGGATTAGATACCCBG -A ACGTCATCCCCACCTTCC /var/folders/d7/0rpznrmn0rvfhz7qb56q0f2h0000gn/T/qiime2-archive-j16qc0cz/a04b10c8-5b78-4949-bb1f-7a895e9185ac/data/65_S62_L001_R1_001.fastq.gz /var/folders/d7/0rpznrmn0rvfhz7qb56q0f2h0000gn/T/qiime2-archive-j16qc0cz/a04b10c8-5b78-4949-bb1f-7a895e9185ac/data/65_S62_L001_R2_001.fastq.gz Processing reads on 1 core in paired-end mode ... [ 8<----] 00:00:14 608,223 reads @ 23.5 µs/read; 2.56 M reads/minute Finished in 14.28 s (23 µs/read; 2.56 M reads/minute). === Summary === Total read pairs processed: 608,223 Read 1 with adapter: 607,319 (99.9%) Read 2 with adapter: 604,242 (99.3%) Pairs that were too short: 608,068 (100.0%) Pairs written (passing filters): 155 (0.0%) Total basepairs processed: 304,558,538 bp Read 1: 152,317,829 bp Read 2: 152,240,709 bp Total written (filtered): 74,459 bp (0.0%) Read 1: 36,721 bp Read 2: 37,738 bp === First read: Adapter 1 === Sequence: AMCVGGATTAGATACCCBG; Type: regular 3'; Length: 19; Trimmed: 607319 times No. of allowed errors: 1-9 bp: 0; 10-19 bp: 1 Bases preceding removed adapters: A: 0.5% C: 0.0% G: 0.4% T: 0.0% none/other: 99.1% Overview of removed sequences length count expect max.err error counts 3 1 9503.5 0 1 4 5 2375.9 0 5 38 1 0.0 1 1 40 4 0.0 1 4 41 4 0.0 1 4 42 1 0.0 1 1 44 1 0.0 1 1 95 2 0.0 1 2 102 2 0.0 1 0 2 110 1 0.0 1 1 117 1 0.0 1 1 118 1 0.0 1 1 127 1 0.0 1 1 132 1 0.0 1 1 134 2 0.0 1 2 139 1 0.0 1 1 143 1 0.0 1 1 148 1 0.0 1 1 152 2 0.0 1 2 174 1 0.0 1 1 182 1 0.0 1 1 205 1 0.0 1 1 207 1 0.0 1 1 209 1 0.0 1 1 213 1 0.0 1 1 214 1 0.0 1 1 215 1 0.0 1 1 224 3 0.0 1 3 226 4 0.0 1 4 228 1 0.0 1 1 229 3 0.0 1 3 231 1 0.0 1 1 232 1 0.0 1 1 233 1 0.0 1 0 1 235 1 0.0 1 1 238 2 0.0 1 1 1 239 3 0.0 1 3 241 35 0.0 1 35 242 5 0.0 1 4 1 243 3 0.0 1 3 246 22 0.0 1 19 3 247 116 0.0 1 87 29 248 7509 0.0 1 7301 208 249 7127 0.0 1 6784 343 250 303153 0.0 1 298368 4785 251 289288 0.0 1 281850 7438 === Second read: Adapter 2 === Sequence: ACGTCATCCCCACCTTCC; Type: regular 3'; Length: 18; Trimmed: 604242 times No. of allowed errors: 1-9 bp: 0; 10-18 bp: 1 Bases preceding removed adapters: A: 0.0% C: 0.0% G: 0.1% T: 0.0% none/other: 99.9% Overview of removed sequences length count expect max.err error counts 3 9 9503.5 0 9 36 1 0.0 1 1 38 1 0.0 1 1 40 3 0.0 1 3 41 4 0.0 1 3 1 42 1 0.0 1 1 44 1 0.0 1 0 1 84 1 0.0 1 0 1 86 1 0.0 1 0 1 91 1 0.0 1 0 1 95 2 0.0 1 0 2 96 1 0.0 1 0 1 97 2 0.0 1 0 2 98 2 0.0 1 0 2 100 1 0.0 1 0 1 110 1 0.0 1 1 118 1 0.0 1 1 127 1 0.0 1 1 134 2 0.0 1 2 139 1 0.0 1 1 142 2 0.0 1 0 2 143 1 0.0 1 1 144 4 0.0 1 0 4 148 1 0.0 1 1 164 3 0.0 1 3 165 1 0.0 1 0 1 169 1 0.0 1 1 174 1 0.0 1 1 181 2 0.0 1 2 182 2 0.0 1 2 203 1 0.0 1 1 204 1 0.0 1 0 1 205 2 0.0 1 2 207 1 0.0 1 1 208 2 0.0 1 2 209 1 0.0 1 1 210 1 0.0 1 1 215 1 0.0 1 1 219 4 0.0 1 4 223 2 0.0 1 2 224 3 0.0 1 3 226 2 0.0 1 2 238 1 0.0 1 1 239 2 0.0 1 2 242 2 0.0 1 2 244 3 0.0 1 2 1 245 1 0.0 1 0 1 246 6 0.0 1 4 2 247 4 0.0 1 4 248 295 0.0 1 280 15 249 3093 0.0 1 2781 312 250 405476 0.0 1 393338 12138 251 195283 0.0 1 188724 6559 Command: cutadapt --cores 1 --error-rate 0.1 --times 1 --overlap 3 --minimum-length 1 -o /var/folders/d7/0rpznrmn0rvfhz7qb56q0f2h0000gn/T/q2-CasavaOneEightSingleLanePerSampleDirFmt-oi5gnzse/72_S69_L001_R1_001.fastq.gz -p /var/folders/d7/0rpznrmn0rvfhz7qb56q0f2h0000gn/T/q2-CasavaOneEightSingleLanePerSampleDirFmt-oi5gnzse/72_S69_L001_R2_001.fastq.gz --adapter AMCVGGATTAGATACCCBG -A ACGTCATCCCCACCTTCC /var/folders/d7/0rpznrmn0rvfhz7qb56q0f2h0000gn/T/qiime2-archive-j16qc0cz/a04b10c8-5b78-4949-bb1f-7a895e9185ac/data/72_S69_L001_R1_001.fastq.gz /var/folders/d7/0rpznrmn0rvfhz7qb56q0f2h0000gn/T/qiime2-archive-j16qc0cz/a04b10c8-5b78-4949-bb1f-7a895e9185ac/data/72_S69_L001_R2_001.fastq.gz This is cutadapt 3.4 with Python 3.8.8 Command line parameters: --cores 1 --error-rate 0.1 --times 1 --overlap 3 --minimum-length 1 -o /var/folders/d7/0rpznrmn0rvfhz7qb56q0f2h0000gn/T/q2-CasavaOneEightSingleLanePerSampleDirFmt-oi5gnzse/72_S69_L001_R1_001.fastq.gz -p /var/folders/d7/0rpznrmn0rvfhz7qb56q0f2h0000gn/T/q2-CasavaOneEightSingleLanePerSampleDirFmt-oi5gnzse/72_S69_L001_R2_001.fastq.gz --adapter AMCVGGATTAGATACCCBG -A ACGTCATCCCCACCTTCC /var/folders/d7/0rpznrmn0rvfhz7qb56q0f2h0000gn/T/qiime2-archive-j16qc0cz/a04b10c8-5b78-4949-bb1f-7a895e9185ac/data/72_S69_L001_R1_001.fastq.gz /var/folders/d7/0rpznrmn0rvfhz7qb56q0f2h0000gn/T/qiime2-archive-j16qc0cz/a04b10c8-5b78-4949-bb1f-7a895e9185ac/data/72_S69_L001_R2_001.fastq.gz Processing reads on 1 core in paired-end mode ... [ 8<----] 00:00:14 620,520 reads @ 23.1 µs/read; 2.59 M reads/minute Finished in 14.36 s (23 µs/read; 2.59 M reads/minute). === Summary === Total read pairs processed: 620,520 Read 1 with adapter: 619,735 (99.9%) Read 2 with adapter: 615,726 (99.2%) Pairs that were too short: 620,376 (100.0%) Pairs written (passing filters): 144 (0.0%) Total basepairs processed: 310,699,446 bp Read 1: 155,543,752 bp Read 2: 155,155,694 bp Total written (filtered): 67,214 bp (0.0%) Read 1: 32,505 bp Read 2: 34,709 bp === First read: Adapter 1 === Sequence: AMCVGGATTAGATACCCBG; Type: regular 3'; Length: 19; Trimmed: 619735 times No. of allowed errors: 1-9 bp: 0; 10-19 bp: 1 Bases preceding removed adapters: A: 0.1% C: 0.0% G: 0.1% T: 0.0% none/other: 99.8% Overview of removed sequences length count expect max.err error counts 3 2 9695.6 0 2 4 5 2423.9 0 5 5 2 606.0 0 2 6 2 151.5 0 2 35 10 0.0 1 9 1 36 7 0.0 1 7 37 3 0.0 1 3 38 4 0.0 1 3 1 39 1 0.0 1 0 1 40 44 0.0 1 40 4 41 55 0.0 1 55 42 68 0.0 1 64 4 43 28 0.0 1 27 1 44 1 0.0 1 1 45 3 0.0 1 3 46 4 0.0 1 4 47 2 0.0 1 2 79 1 0.0 1 1 84 1 0.0 1 1 85 2 0.0 1 2 90 1 0.0 1 1 93 2 0.0 1 2 98 1 0.0 1 1 99 2 0.0 1 2 101 2 0.0 1 2 102 1 0.0 1 1 109 1 0.0 1 1 111 1 0.0 1 1 113 2 0.0 1 2 120 1 0.0 1 1 123 2 0.0 1 2 125 1 0.0 1 1 126 1 0.0 1 1 127 1 0.0 1 1 134 1 0.0 1 1 139 1 0.0 1 1 142 2 0.0 1 2 149 1 0.0 1 1 155 1 0.0 1 1 161 2 0.0 1 2 162 1 0.0 1 1 165 2 0.0 1 2 175 5 0.0 1 5 176 3 0.0 1 3 177 2 0.0 1 2 180 1 0.0 1 1 182 1 0.0 1 1 183 2 0.0 1 2 184 2 0.0 1 2 185 4 0.0 1 4 186 3 0.0 1 3 187 2 0.0 1 2 188 1 0.0 1 1 190 3 0.0 1 3 191 11 0.0 1 10 1 192 2 0.0 1 2 195 3 0.0 1 3 197 2 0.0 1 2 199 1 0.0 1 1 206 2 0.0 1 2 208 2 0.0 1 2 210 1 0.0 1 1 211 3 0.0 1 3 213 1 0.0 1 1 214 4 0.0 1 4 215 5 0.0 1 5 216 5 0.0 1 5 217 3 0.0 1 3 218 1 0.0 1 1 220 1 0.0 1 1 221 1 0.0 1 1 222 2 0.0 1 2 223 2 0.0 1 2 224 3 0.0 1 3 225 1 0.0 1 1 226 4 0.0 1 4 227 3 0.0 1 3 230 1 0.0 1 1 231 2 0.0 1 2 232 2 0.0 1 2 233 1 0.0 1 1 237 1 0.0 1 1 238 3 0.0 1 3 239 2 0.0 1 1 1 240 3 0.0 1 2 1 241 5 0.0 1 5 243 2 0.0 1 2 244 7 0.0 1 6 1 245 28 0.0 1 28 246 49 0.0 1 49 247 251 0.0 1 240 11 248 4365 0.0 1 4240 125 249 18143 0.0 1 17663 480 250 97877 0.0 1 95751 2126 251 498626 0.0 1 489079 9547 === Second read: Adapter 2 === Sequence: ACGTCATCCCCACCTTCC; Type: regular 3'; Length: 18; Trimmed: 615726 times No. of allowed errors: 1-9 bp: 0; 10-18 bp: 1 Bases preceding removed adapters: A: 0.6% C: 0.0% G: 1.0% T: 0.0% none/other: 98.4% Overview of removed sequences length count expect max.err error counts 3 18 9695.6 0 18 35 9 0.0 1 9 36 7 0.0 1 7 37 3 0.0 1 3 38 2 0.0 1 1 1 39 1 0.0 1 1 40 42 0.0 1 41 1 41 51 0.0 1 48 3 42 70 0.0 1 68 2 43 27 0.0 1 27 44 1 0.0 1 1 45 2 0.0 1 2 46 4 0.0 1 4 47 2 0.0 1 2 79 1 0.0 1 1 84 1 0.0 1 1 85 2 0.0 1 0 2 90 1 0.0 1 1 93 2 0.0 1 2 95 3 0.0 1 0 3 96 1 0.0 1 0 1 97 5 0.0 1 0 5 98 1 0.0 1 1 99 1 0.0 1 1 101 2 0.0 1 2 102 1 0.0 1 1 109 1 0.0 1 1 111 1 0.0 1 1 113 2 0.0 1 2 120 1 0.0 1 1 123 2 0.0 1 2 125 1 0.0 1 1 126 1 0.0 1 1 127 1 0.0 1 1 134 1 0.0 1 1 137 1 0.0 1 0 1 139 1 0.0 1 1 142 5 0.0 1 2 3 144 1 0.0 1 0 1 148 1 0.0 1 1 149 1 0.0 1 1 155 1 0.0 1 1 161 2 0.0 1 2 162 1 0.0 1 1 172 1 0.0 1 1 175 5 0.0 1 5 176 2 0.0 1 2 177 2 0.0 1 2 180 1 0.0 1 1 182 1 0.0 1 1 183 2 0.0 1 2 184 2 0.0 1 2 185 4 0.0 1 4 186 5 0.0 1 5 187 2 0.0 1 2 188 1 0.0 1 1 190 3 0.0 1 2 1 191 11 0.0 1 11 192 2 0.0 1 2 195 3 0.0 1 3 197 2 0.0 1 2 199 1 0.0 1 1 204 1 0.0 1 0 1 206 3 0.0 1 3 207 18 0.0 1 18 208 2 0.0 1 2 210 2 0.0 1 2 211 3 0.0 1 3 212 1 0.0 1 1 214 4 0.0 1 4 215 5 0.0 1 5 216 4 0.0 1 4 217 1 0.0 1 1 218 5 0.0 1 5 219 1 0.0 1 1 220 2 0.0 1 2 221 1 0.0 1 1 222 2 0.0 1 2 223 1 0.0 1 1 224 3 0.0 1 3 225 2 0.0 1 2 226 4 0.0 1 3 1 227 2 0.0 1 2 230 1 0.0 1 1 231 1 0.0 1 1 233 1 0.0 1 1 236 1 0.0 1 1 237 1 0.0 1 1 238 1 0.0 1 1 239 3 0.0 1 3 240 1 0.0 1 1 241 3 0.0 1 0 3 242 2 0.0 1 2 243 2 0.0 1 1 1 244 32 0.0 1 28 4 245 3 0.0 1 3 246 3 0.0 1 2 1 247 5 0.0 1 5 248 1228 0.0 1 1138 90 249 7698 0.0 1 7018 680 250 512918 0.0 1 497167 15751 251 93420 0.0 1 89858 3562 Command: cutadapt --cores 1 --error-rate 0.1 --times 1 --overlap 3 --minimum-length 1 -o /var/folders/d7/0rpznrmn0rvfhz7qb56q0f2h0000gn/T/q2-CasavaOneEightSingleLanePerSampleDirFmt-oi5gnzse/75_S72_L001_R1_001.fastq.gz -p /var/folders/d7/0rpznrmn0rvfhz7qb56q0f2h0000gn/T/q2-CasavaOneEightSingleLanePerSampleDirFmt-oi5gnzse/75_S72_L001_R2_001.fastq.gz --adapter AMCVGGATTAGATACCCBG -A ACGTCATCCCCACCTTCC /var/folders/d7/0rpznrmn0rvfhz7qb56q0f2h0000gn/T/qiime2-archive-j16qc0cz/a04b10c8-5b78-4949-bb1f-7a895e9185ac/data/75_S72_L001_R1_001.fastq.gz /var/folders/d7/0rpznrmn0rvfhz7qb56q0f2h0000gn/T/qiime2-archive-j16qc0cz/a04b10c8-5b78-4949-bb1f-7a895e9185ac/data/75_S72_L001_R2_001.fastq.gz This is cutadapt 3.4 with Python 3.8.8 Command line parameters: --cores 1 --error-rate 0.1 --times 1 --overlap 3 --minimum-length 1 -o /var/folders/d7/0rpznrmn0rvfhz7qb56q0f2h0000gn/T/q2-CasavaOneEightSingleLanePerSampleDirFmt-oi5gnzse/75_S72_L001_R1_001.fastq.gz -p /var/folders/d7/0rpznrmn0rvfhz7qb56q0f2h0000gn/T/q2-CasavaOneEightSingleLanePerSampleDirFmt-oi5gnzse/75_S72_L001_R2_001.fastq.gz --adapter AMCVGGATTAGATACCCBG -A ACGTCATCCCCACCTTCC /var/folders/d7/0rpznrmn0rvfhz7qb56q0f2h0000gn/T/qiime2-archive-j16qc0cz/a04b10c8-5b78-4949-bb1f-7a895e9185ac/data/75_S72_L001_R1_001.fastq.gz /var/folders/d7/0rpznrmn0rvfhz7qb56q0f2h0000gn/T/qiime2-archive-j16qc0cz/a04b10c8-5b78-4949-bb1f-7a895e9185ac/data/75_S72_L001_R2_001.fastq.gz Processing reads on 1 core in paired-end mode ... [ 8=--] 00:00:21 895,429 reads @ 23.6 µs/read; 2.55 M reads/minute Finished in 21.10 s (24 µs/read; 2.55 M reads/minute). === Summary === Total read pairs processed: 895,429 Read 1 with adapter: 894,284 (99.9%) Read 2 with adapter: 889,334 (99.3%) Pairs that were too short: 895,266 (100.0%) Pairs written (passing filters): 163 (0.0%) Total basepairs processed: 446,505,712 bp Read 1: 223,349,445 bp Read 2: 223,156,267 bp Total written (filtered): 73,282 bp (0.0%) Read 1: 34,896 bp Read 2: 38,386 bp === First read: Adapter 1 === Sequence: AMCVGGATTAGATACCCBG; Type: regular 3'; Length: 19; Trimmed: 894284 times No. of allowed errors: 1-9 bp: 0; 10-19 bp: 1 Bases preceding removed adapters: A: 0.4% C: 0.0% G: 0.2% T: 0.0% none/other: 99.4% Overview of removed sequences length count expect max.err error counts 3 9 13991.1 0 9 4 8 3497.8 0 8 5 1 874.4 0 1 35 43 0.0 1 42 1 36 73 0.0 1 73 37 38 0.0 1 36 2 38 4 0.0 1 4 39 30 0.0 1 26 4 40 739 0.0 1 725 14 41 1014 0.0 1 992 22 42 1246 0.0 1 1233 13 43 353 0.0 1 340 13 44 43 0.0 1 42 1 45 128 0.0 1 125 3 46 54 0.0 1 54 47 47 0.0 1 43 4 48 6 0.0 1 6 53 1 0.0 1 1 54 1 0.0 1 1 61 1 0.0 1 0 1 67 1 0.0 1 1 68 1 0.0 1 1 69 1 0.0 1 1 71 1 0.0 1 1 81 1 0.0 1 0 1 95 2 0.0 1 1 1 98 1 0.0 1 1 99 1 0.0 1 1 102 1 0.0 1 1 103 1 0.0 1 1 105 1 0.0 1 1 106 1 0.0 1 1 111 3 0.0 1 3 112 1 0.0 1 1 113 3 0.0 1 3 120 3 0.0 1 3 121 1 0.0 1 1 123 1 0.0 1 1 126 1 0.0 1 1 128 1 0.0 1 1 129 1 0.0 1 1 134 2 0.0 1 2 135 1 0.0 1 1 141 1 0.0 1 1 148 1 0.0 1 0 1 151 1 0.0 1 0 1 161 1 0.0 1 1 163 1 0.0 1 1 164 1 0.0 1 1 165 2 0.0 1 1 1 166 3 0.0 1 2 1 167 1 0.0 1 1 170 2 0.0 1 2 171 3 0.0 1 3 172 3 0.0 1 3 173 2 0.0 1 2 176 1 0.0 1 1 177 1 0.0 1 1 178 2 0.0 1 2 180 2 0.0 1 2 185 3 0.0 1 3 186 2 0.0 1 2 187 5 0.0 1 5 188 2 0.0 1 2 191 2 0.0 1 2 193 3 0.0 1 2 1 194 3 0.0 1 2 1 195 5 0.0 1 4 1 196 4 0.0 1 4 198 1 0.0 1 1 202 2 0.0 1 2 203 6 0.0 1 6 204 7 0.0 1 4 3 205 4 0.0 1 4 206 1 0.0 1 1 210 8 0.0 1 7 1 211 4 0.0 1 3 1 212 10 0.0 1 10 213 35 0.0 1 33 2 214 35 0.0 1 35 215 9 0.0 1 9 216 3 0.0 1 3 217 1 0.0 1 1 218 2 0.0 1 2 219 1 0.0 1 1 220 3 0.0 1 3 221 1 0.0 1 1 222 1 0.0 1 1 223 1 0.0 1 0 1 224 2 0.0 1 2 225 1 0.0 1 0 1 226 5 0.0 1 5 227 1 0.0 1 1 228 3 0.0 1 3 229 1 0.0 1 1 230 1 0.0 1 1 231 1 0.0 1 1 232 3 0.0 1 3 235 3 0.0 1 3 237 2 0.0 1 2 238 2 0.0 1 2 239 3 0.0 1 1 2 240 5 0.0 1 4 1 241 20 0.0 1 20 242 14 0.0 1 10 4 243 12 0.0 1 8 4 244 13 0.0 1 13 245 30 0.0 1 29 1 246 309 0.0 1 301 8 247 937 0.0 1 909 28 248 25275 0.0 1 24726 549 249 116764 0.0 1 114745 2019 250 267877 0.0 1 262968 4909 251 478938 0.0 1 469661 9277 === Second read: Adapter 2 === Sequence: ACGTCATCCCCACCTTCC; Type: regular 3'; Length: 18; Trimmed: 889334 times No. of allowed errors: 1-9 bp: 0; 10-18 bp: 1 Bases preceding removed adapters: A: 0.1% C: 0.0% G: 0.1% T: 0.0% none/other: 99.8% Overview of removed sequences length count expect max.err error counts 3 37 13991.1 0 37 4 2 3497.8 0 2 35 48 0.0 1 44 4 36 71 0.0 1 68 3 37 39 0.0 1 39 38 4 0.0 1 4 39 28 0.0 1 12 16 40 713 0.0 1 692 21 41 1008 0.0 1 966 42 42 1232 0.0 1 1202 30 43 343 0.0 1 325 18 44 47 0.0 1 43 4 45 134 0.0 1 130 4 46 52 0.0 1 51 1 47 46 0.0 1 44 2 48 7 0.0 1 7 53 1 0.0 1 1 54 1 0.0 1 1 61 1 0.0 1 0 1 69 1 0.0 1 1 71 1 0.0 1 1 81 1 0.0 1 1 84 1 0.0 1 0 1 85 3 0.0 1 3 95 3 0.0 1 0 3 96 3 0.0 1 0 3 97 3 0.0 1 0 3 98 2 0.0 1 1 1 99 1 0.0 1 1 102 1 0.0 1 1 103 1 0.0 1 1 105 1 0.0 1 1 106 2 0.0 1 2 111 3 0.0 1 3 112 1 0.0 1 1 113 3 0.0 1 2 1 120 3 0.0 1 3 121 1 0.0 1 1 123 1 0.0 1 1 126 1 0.0 1 1 128 1 0.0 1 1 129 1 0.0 1 1 134 1 0.0 1 1 135 1 0.0 1 1 141 2 0.0 1 1 1 142 2 0.0 1 0 2 144 1 0.0 1 0 1 146 2 0.0 1 2 148 5 0.0 1 5 151 2 0.0 1 2 159 1 0.0 1 1 161 2 0.0 1 2 163 1 0.0 1 1 164 2 0.0 1 2 165 5 0.0 1 2 3 166 3 0.0 1 2 1 167 1 0.0 1 1 170 2 0.0 1 2 171 4 0.0 1 4 172 3 0.0 1 3 173 2 0.0 1 2 174 2 0.0 1 2 175 6 0.0 1 6 176 10 0.0 1 10 177 1 0.0 1 1 178 2 0.0 1 2 180 2 0.0 1 2 181 1 0.0 1 1 182 1 0.0 1 1 183 2 0.0 1 2 185 3 0.0 1 3 186 3 0.0 1 3 187 5 0.0 1 5 188 2 0.0 1 2 189 2 0.0 1 1 1 191 2 0.0 1 2 193 3 0.0 1 2 1 194 3 0.0 1 3 195 4 0.0 1 4 196 5 0.0 1 5 198 1 0.0 1 1 202 2 0.0 1 2 203 6 0.0 1 6 204 9 0.0 1 9 205 5 0.0 1 5 206 4 0.0 1 4 207 10 0.0 1 10 208 1 0.0 1 0 1 209 1 0.0 1 1 210 8 0.0 1 8 211 6 0.0 1 6 212 11 0.0 1 11 213 35 0.0 1 35 214 34 0.0 1 34 215 11 0.0 1 11 216 3 0.0 1 3 217 1 0.0 1 1 218 5 0.0 1 5 219 8 0.0 1 8 220 5 0.0 1 5 222 2 0.0 1 0 2 223 2 0.0 1 2 224 2 0.0 1 2 225 5 0.0 1 5 226 5 0.0 1 5 227 1 0.0 1 1 228 2 0.0 1 2 230 1 0.0 1 1 232 1 0.0 1 1 237 1 0.0 1 1 238 1 0.0 1 1 240 5 0.0 1 3 2 241 1 0.0 1 1 242 3 0.0 1 3 243 2 0.0 1 2 244 32 0.0 1 29 3 245 1 0.0 1 1 246 6 0.0 1 5 1 247 31 0.0 1 25 6 248 1245 0.0 1 1161 84 249 50933 0.0 1 49058 1875 250 668652 0.0 1 649735 18917 251 164280 0.0 1 158723 5557 Command: cutadapt --cores 1 --error-rate 0.1 --times 1 --overlap 3 --minimum-length 1 -o /var/folders/d7/0rpznrmn0rvfhz7qb56q0f2h0000gn/T/q2-CasavaOneEightSingleLanePerSampleDirFmt-oi5gnzse/90_S87_L001_R1_001.fastq.gz -p /var/folders/d7/0rpznrmn0rvfhz7qb56q0f2h0000gn/T/q2-CasavaOneEightSingleLanePerSampleDirFmt-oi5gnzse/90_S87_L001_R2_001.fastq.gz --adapter AMCVGGATTAGATACCCBG -A ACGTCATCCCCACCTTCC /var/folders/d7/0rpznrmn0rvfhz7qb56q0f2h0000gn/T/qiime2-archive-j16qc0cz/a04b10c8-5b78-4949-bb1f-7a895e9185ac/data/90_S87_L001_R1_001.fastq.gz /var/folders/d7/0rpznrmn0rvfhz7qb56q0f2h0000gn/T/qiime2-archive-j16qc0cz/a04b10c8-5b78-4949-bb1f-7a895e9185ac/data/90_S87_L001_R2_001.fastq.gz This is cutadapt 3.4 with Python 3.8.8 Command line parameters: --cores 1 --error-rate 0.1 --times 1 --overlap 3 --minimum-length 1 -o /var/folders/d7/0rpznrmn0rvfhz7qb56q0f2h0000gn/T/q2-CasavaOneEightSingleLanePerSampleDirFmt-oi5gnzse/90_S87_L001_R1_001.fastq.gz -p /var/folders/d7/0rpznrmn0rvfhz7qb56q0f2h0000gn/T/q2-CasavaOneEightSingleLanePerSampleDirFmt-oi5gnzse/90_S87_L001_R2_001.fastq.gz --adapter AMCVGGATTAGATACCCBG -A ACGTCATCCCCACCTTCC /var/folders/d7/0rpznrmn0rvfhz7qb56q0f2h0000gn/T/qiime2-archive-j16qc0cz/a04b10c8-5b78-4949-bb1f-7a895e9185ac/data/90_S87_L001_R1_001.fastq.gz /var/folders/d7/0rpznrmn0rvfhz7qb56q0f2h0000gn/T/qiime2-archive-j16qc0cz/a04b10c8-5b78-4949-bb1f-7a895e9185ac/data/90_S87_L001_R2_001.fastq.gz Processing reads on 1 core in paired-end mode ... [ 8=-----] 00:00:14 592,455 reads @ 23.7 µs/read; 2.53 M reads/minute Finished in 14.06 s (24 µs/read; 2.53 M reads/minute). === Summary === Total read pairs processed: 592,455 Read 1 with adapter: 590,993 (99.8%) Read 2 with adapter: 589,775 (99.5%) Pairs that were too short: 592,305 (100.0%) Pairs written (passing filters): 150 (0.0%) Total basepairs processed: 295,462,791 bp Read 1: 147,717,640 bp Read 2: 147,745,151 bp Total written (filtered): 70,607 bp (0.0%) Read 1: 35,154 bp Read 2: 35,453 bp === First read: Adapter 1 === Sequence: AMCVGGATTAGATACCCBG; Type: regular 3'; Length: 19; Trimmed: 590993 times No. of allowed errors: 1-9 bp: 0; 10-19 bp: 1 Bases preceding removed adapters: A: 0.1% C: 0.0% G: 0.1% T: 0.0% none/other: 99.8% Overview of removed sequences length count expect max.err error counts 3 33 9257.1 0 33 4 38 2314.3 0 38 5 8 578.6 0 8 6 1 144.6 0 1 7 1 36.2 0 1 35 161 0.0 1 151 10 36 275 0.0 1 272 3 37 93 0.0 1 92 1 38 16 0.0 1 16 39 12 0.0 1 11 1 40 337 0.0 1 331 6 41 492 0.0 1 482 10 42 580 0.0 1 562 18 43 177 0.0 1 175 2 44 36 0.0 1 34 2 45 13 0.0 1 13 46 12 0.0 1 12 48 1 0.0 1 1 50 2 0.0 1 2 51 1 0.0 1 1 52 1 0.0 1 1 53 1 0.0 1 0 1 54 2 0.0 1 2 55 1 0.0 1 1 56 1 0.0 1 1 59 4 0.0 1 4 60 8 0.0 1 7 1 61 1 0.0 1 1 63 1 0.0 1 1 65 1 0.0 1 1 68 1 0.0 1 1 70 2 0.0 1 2 73 1 0.0 1 1 77 1 0.0 1 1 82 36 0.0 1 35 1 83 7 0.0 1 7 84 3 0.0 1 3 90 8 0.0 1 8 91 16 0.0 1 12 4 92 50 0.0 1 50 93 21 0.0 1 21 94 1 0.0 1 1 95 2 0.0 1 2 96 2 0.0 1 1 1 98 1 0.0 1 1 99 1 0.0 1 1 100 1 0.0 1 1 102 1 0.0 1 0 1 104 1 0.0 1 1 108 2 0.0 1 2 109 1 0.0 1 1 110 3 0.0 1 3 113 1 0.0 1 1 114 2 0.0 1 2 115 1 0.0 1 1 121 1 0.0 1 1 123 1 0.0 1 1 129 1 0.0 1 1 131 1 0.0 1 1 134 1 0.0 1 1 141 2 0.0 1 2 143 1 0.0 1 1 148 1 0.0 1 0 1 150 12 0.0 1 12 151 3 0.0 1 3 156 1 0.0 1 1 159 3 0.0 1 1 2 160 1 0.0 1 1 162 1 0.0 1 1 164 4 0.0 1 4 165 3 0.0 1 2 1 166 4 0.0 1 4 167 4 0.0 1 3 1 168 2 0.0 1 1 1 169 2 0.0 1 2 170 1 0.0 1 1 172 2 0.0 1 2 173 1 0.0 1 1 174 2 0.0 1 2 175 1 0.0 1 0 1 177 4 0.0 1 4 178 2 0.0 1 2 179 2 0.0 1 2 181 3 0.0 1 3 183 2 0.0 1 2 184 1 0.0 1 1 190 3 0.0 1 3 191 1 0.0 1 1 192 1 0.0 1 1 193 3 0.0 1 3 194 3 0.0 1 3 195 1 0.0 1 1 196 4 0.0 1 4 197 4 0.0 1 4 198 5 0.0 1 5 200 1 0.0 1 0 1 201 4 0.0 1 4 202 2 0.0 1 2 203 2 0.0 1 2 204 2 0.0 1 1 1 206 1 0.0 1 1 207 1 0.0 1 1 209 2 0.0 1 2 210 1 0.0 1 1 211 1 0.0 1 1 212 15 0.0 1 15 213 58 0.0 1 56 2 214 127 0.0 1 122 5 215 18 0.0 1 17 1 216 6 0.0 1 6 218 5 0.0 1 5 219 2 0.0 1 2 220 4 0.0 1 4 221 3 0.0 1 3 222 7 0.0 1 7 223 5 0.0 1 5 224 2 0.0 1 2 225 4 0.0 1 1 3 226 2 0.0 1 1 1 227 4 0.0 1 4 228 3 0.0 1 3 230 3 0.0 1 3 231 2 0.0 1 2 232 1 0.0 1 1 233 2 0.0 1 2 234 3 0.0 1 3 235 4 0.0 1 4 237 2 0.0 1 2 238 1 0.0 1 1 239 1 0.0 1 1 240 20 0.0 1 19 1 241 38 0.0 1 38 242 12 0.0 1 12 243 22 0.0 1 19 3 244 28 0.0 1 28 245 49 0.0 1 46 3 246 244 0.0 1 234 10 247 1345 0.0 1 1290 55 248 20964 0.0 1 20288 676 249 102012 0.0 1 99335 2677 250 192420 0.0 1 187028 5392 251 270967 0.0 1 263137 7830 === Second read: Adapter 2 === Sequence: ACGTCATCCCCACCTTCC; Type: regular 3'; Length: 18; Trimmed: 589775 times No. of allowed errors: 1-9 bp: 0; 10-18 bp: 1 Bases preceding removed adapters: A: 0.1% C: 0.0% G: 0.1% T: 0.0% none/other: 99.8% Overview of removed sequences length count expect max.err error counts 3 26 9257.1 0 26 4 3 2314.3 0 3 35 156 0.0 1 138 18 36 275 0.0 1 270 5 37 95 0.0 1 92 3 38 18 0.0 1 18 39 11 0.0 1 9 2 40 333 0.0 1 322 11 41 483 0.0 1 463 20 42 588 0.0 1 569 19 43 167 0.0 1 165 2 44 35 0.0 1 34 1 45 15 0.0 1 15 46 9 0.0 1 8 1 47 1 0.0 1 1 48 1 0.0 1 0 1 49 1 0.0 1 1 50 2 0.0 1 2 51 1 0.0 1 1 52 1 0.0 1 1 53 1 0.0 1 1 54 2 0.0 1 2 55 1 0.0 1 1 56 1 0.0 1 1 59 4 0.0 1 4 60 8 0.0 1 7 1 61 1 0.0 1 1 65 3 0.0 1 3 70 1 0.0 1 1 73 1 0.0 1 1 74 3 0.0 1 3 82 34 0.0 1 31 3 83 8 0.0 1 7 1 84 2 0.0 1 2 90 8 0.0 1 8 91 17 0.0 1 17 92 51 0.0 1 49 2 93 23 0.0 1 23 94 1 0.0 1 1 95 1 0.0 1 0 1 96 1 0.0 1 1 97 1 0.0 1 0 1 98 1 0.0 1 1 99 1 0.0 1 0 1 100 1 0.0 1 0 1 104 1 0.0 1 1 109 1 0.0 1 1 110 4 0.0 1 4 112 2 0.0 1 2 113 1 0.0 1 1 114 2 0.0 1 2 115 1 0.0 1 1 121 1 0.0 1 1 123 1 0.0 1 1 129 1 0.0 1 1 131 1 0.0 1 1 132 1 0.0 1 0 1 134 1 0.0 1 1 137 1 0.0 1 1 141 2 0.0 1 2 142 6 0.0 1 0 6 143 2 0.0 1 1 1 146 1 0.0 1 1 147 1 0.0 1 1 148 5 0.0 1 5 150 12 0.0 1 12 151 3 0.0 1 3 156 1 0.0 1 1 159 4 0.0 1 4 160 2 0.0 1 2 162 1 0.0 1 1 164 3 0.0 1 3 165 3 0.0 1 3 166 4 0.0 1 4 167 4 0.0 1 3 1 168 2 0.0 1 2 169 2 0.0 1 2 170 1 0.0 1 1 171 1 0.0 1 1 172 2 0.0 1 2 173 1 0.0 1 1 174 2 0.0 1 2 175 2 0.0 1 2 177 4 0.0 1 4 178 2 0.0 1 2 179 2 0.0 1 1 1 181 2 0.0 1 2 182 2 0.0 1 2 183 3 0.0 1 3 184 7 0.0 1 7 185 2 0.0 1 2 186 2 0.0 1 2 187 3 0.0 1 3 188 1 0.0 1 1 189 1 0.0 1 1 190 3 0.0 1 3 191 1 0.0 1 1 192 2 0.0 1 2 193 2 0.0 1 2 194 3 0.0 1 3 195 1 0.0 1 1 196 4 0.0 1 4 197 4 0.0 1 4 198 6 0.0 1 5 1 200 1 0.0 1 1 201 3 0.0 1 3 202 2 0.0 1 2 203 2 0.0 1 2 204 2 0.0 1 2 205 1 0.0 1 1 206 2 0.0 1 2 207 8 0.0 1 8 208 1 0.0 1 0 1 209 3 0.0 1 3 210 1 0.0 1 1 211 1 0.0 1 0 1 212 18 0.0 1 17 1 213 69 0.0 1 69 214 132 0.0 1 129 3 215 20 0.0 1 20 216 8 0.0 1 8 218 3 0.0 1 3 219 3 0.0 1 3 220 5 0.0 1 5 221 2 0.0 1 2 222 12 0.0 1 12 223 4 0.0 1 4 224 3 0.0 1 3 225 5 0.0 1 5 226 3 0.0 1 2 1 227 3 0.0 1 3 228 3 0.0 1 3 229 1 0.0 1 1 230 4 0.0 1 4 232 2 0.0 1 2 234 3 0.0 1 3 235 1 0.0 1 1 236 1 0.0 1 1 238 1 0.0 1 1 239 2 0.0 1 2 240 3 0.0 1 2 1 241 1 0.0 1 1 243 3 0.0 1 2 1 244 16 0.0 1 15 1 245 8 0.0 1 7 1 246 8 0.0 1 8 247 26 0.0 1 25 1 248 1566 0.0 1 1488 78 249 47966 0.0 1 46563 1403 250 340201 0.0 1 331227 8974 251 197102 0.0 1 191325 5777 Command: cutadapt --cores 1 --error-rate 0.1 --times 1 --overlap 3 --minimum-length 1 -o /var/folders/d7/0rpznrmn0rvfhz7qb56q0f2h0000gn/T/q2-CasavaOneEightSingleLanePerSampleDirFmt-oi5gnzse/98_S95_L001_R1_001.fastq.gz -p /var/folders/d7/0rpznrmn0rvfhz7qb56q0f2h0000gn/T/q2-CasavaOneEightSingleLanePerSampleDirFmt-oi5gnzse/98_S95_L001_R2_001.fastq.gz --adapter AMCVGGATTAGATACCCBG -A ACGTCATCCCCACCTTCC /var/folders/d7/0rpznrmn0rvfhz7qb56q0f2h0000gn/T/qiime2-archive-j16qc0cz/a04b10c8-5b78-4949-bb1f-7a895e9185ac/data/98_S95_L001_R1_001.fastq.gz /var/folders/d7/0rpznrmn0rvfhz7qb56q0f2h0000gn/T/qiime2-archive-j16qc0cz/a04b10c8-5b78-4949-bb1f-7a895e9185ac/data/98_S95_L001_R2_001.fastq.gz This is cutadapt 3.4 with Python 3.8.8 Command line parameters: --cores 1 --error-rate 0.1 --times 1 --overlap 3 --minimum-length 1 -o /var/folders/d7/0rpznrmn0rvfhz7qb56q0f2h0000gn/T/q2-CasavaOneEightSingleLanePerSampleDirFmt-oi5gnzse/98_S95_L001_R1_001.fastq.gz -p /var/folders/d7/0rpznrmn0rvfhz7qb56q0f2h0000gn/T/q2-CasavaOneEightSingleLanePerSampleDirFmt-oi5gnzse/98_S95_L001_R2_001.fastq.gz --adapter AMCVGGATTAGATACCCBG -A ACGTCATCCCCACCTTCC /var/folders/d7/0rpznrmn0rvfhz7qb56q0f2h0000gn/T/qiime2-archive-j16qc0cz/a04b10c8-5b78-4949-bb1f-7a895e9185ac/data/98_S95_L001_R1_001.fastq.gz /var/folders/d7/0rpznrmn0rvfhz7qb56q0f2h0000gn/T/qiime2-archive-j16qc0cz/a04b10c8-5b78-4949-bb1f-7a895e9185ac/data/98_S95_L001_R2_001.fastq.gz Processing reads on 1 core in paired-end mode ... [ 8<---] 00:00:16 717,549 reads @ 23.3 µs/read; 2.57 M reads/minute Finished in 16.76 s (23 µs/read; 2.57 M reads/minute). === Summary === Total read pairs processed: 717,549 Read 1 with adapter: 716,502 (99.9%) Read 2 with adapter: 712,157 (99.2%) Pairs that were too short: 717,377 (100.0%) Pairs written (passing filters): 172 (0.0%) Total basepairs processed: 358,115,056 bp Read 1: 179,425,890 bp Read 2: 178,689,166 bp Total written (filtered): 74,314 bp (0.0%) Read 1: 36,905 bp Read 2: 37,409 bp === First read: Adapter 1 === Sequence: AMCVGGATTAGATACCCBG; Type: regular 3'; Length: 19; Trimmed: 716502 times No. of allowed errors: 1-9 bp: 0; 10-19 bp: 1 Bases preceding removed adapters: A: 0.1% C: 0.0% G: 0.1% T: 0.0% none/other: 99.8% Overview of removed sequences length count expect max.err error counts 3 1 11211.7 0 1 4 18 2802.9 0 18 5 10 700.7 0 10 6 1 175.2 0 1 10 3 0.7 1 0 3 35 83 0.0 1 80 3 36 156 0.0 1 155 1 37 59 0.0 1 57 2 38 8 0.0 1 8 39 12 0.0 1 10 2 40 349 0.0 1 341 8 41 469 0.0 1 457 12 42 632 0.0 1 623 9 43 204 0.0 1 199 5 44 71 0.0 1 71 45 11 0.0 1 11 46 3 0.0 1 3 47 1 0.0 1 1 50 1 0.0 1 1 52 1 0.0 1 1 54 2 0.0 1 2 64 1 0.0 1 1 68 1 0.0 1 1 69 3 0.0 1 3 71 1 0.0 1 1 92 2 0.0 1 1 1 93 2 0.0 1 1 1 94 1 0.0 1 1 101 1 0.0 1 0 1 102 1 0.0 1 1 104 3 0.0 1 3 105 124 0.0 1 122 2 106 47 0.0 1 46 1 107 4 0.0 1 4 110 2 0.0 1 2 111 1 0.0 1 1 114 2 0.0 1 2 116 2 0.0 1 2 117 1 0.0 1 1 120 2 0.0 1 2 121 2 0.0 1 2 124 1 0.0 1 1 135 1 0.0 1 1 142 1 0.0 1 1 144 2 0.0 1 2 145 1 0.0 1 1 154 1 0.0 1 1 162 1 0.0 1 0 1 164 3 0.0 1 2 1 169 1 0.0 1 1 176 1 0.0 1 1 179 1 0.0 1 1 181 2 0.0 1 2 183 1 0.0 1 1 184 4 0.0 1 3 1 185 2 0.0 1 2 188 1 0.0 1 0 1 190 1 0.0 1 1 191 15 0.0 1 12 3 193 1 0.0 1 1 194 1 0.0 1 1 195 2 0.0 1 2 196 1 0.0 1 1 197 1 0.0 1 1 199 1 0.0 1 1 202 7 0.0 1 7 203 2 0.0 1 2 204 2 0.0 1 2 206 2 0.0 1 2 208 1 0.0 1 1 210 2 0.0 1 2 211 1 0.0 1 1 212 2 0.0 1 2 213 5 0.0 1 5 214 4 0.0 1 4 215 2 0.0 1 1 1 216 2 0.0 1 2 217 1 0.0 1 1 220 2 0.0 1 2 222 2 0.0 1 2 224 1 0.0 1 1 227 1 0.0 1 1 229 1 0.0 1 1 230 4 0.0 1 4 231 5 0.0 1 5 232 2 0.0 1 2 233 2 0.0 1 2 234 1 0.0 1 1 235 3 0.0 1 3 236 1 0.0 1 1 237 1 0.0 1 1 238 6 0.0 1 6 239 2 0.0 1 2 240 7 0.0 1 7 241 8 0.0 1 8 242 4 0.0 1 4 243 5 0.0 1 5 244 4 0.0 1 4 245 67 0.0 1 67 246 64 0.0 1 63 1 247 400 0.0 1 392 8 248 11886 0.0 1 11626 260 249 35367 0.0 1 34626 741 250 94034 0.0 1 91807 2227 251 572244 0.0 1 560575 11669 === Second read: Adapter 2 === Sequence: ACGTCATCCCCACCTTCC; Type: regular 3'; Length: 18; Trimmed: 712157 times No. of allowed errors: 1-9 bp: 0; 10-18 bp: 1 Bases preceding removed adapters: A: 0.1% C: 0.0% G: 0.1% T: 0.0% none/other: 99.8% Overview of removed sequences length count expect max.err error counts 3 190 11211.7 0 190 4 2 2802.9 0 2 35 81 0.0 1 76 5 36 155 0.0 1 148 7 37 60 0.0 1 57 3 38 9 0.0 1 8 1 39 13 0.0 1 11 2 40 338 0.0 1 319 19 41 456 0.0 1 435 21 42 635 0.0 1 613 22 43 205 0.0 1 201 4 44 70 0.0 1 69 1 45 11 0.0 1 11 46 3 0.0 1 3 47 1 0.0 1 1 50 1 0.0 1 1 54 2 0.0 1 2 55 1 0.0 1 1 56 1 0.0 1 1 68 1 0.0 1 1 69 2 0.0 1 2 71 1 0.0 1 1 93 3 0.0 1 1 2 94 1 0.0 1 1 97 3 0.0 1 0 3 98 2 0.0 1 0 2 102 1 0.0 1 1 104 3 0.0 1 2 1 105 121 0.0 1 116 5 106 47 0.0 1 47 107 4 0.0 1 4 110 2 0.0 1 2 111 1 0.0 1 1 112 1 0.0 1 1 114 2 0.0 1 2 116 2 0.0 1 1 1 117 1 0.0 1 1 120 3 0.0 1 3 121 2 0.0 1 2 124 1 0.0 1 1 135 1 0.0 1 1 141 10 0.0 1 0 10 142 5 0.0 1 0 5 144 6 0.0 1 1 5 145 1 0.0 1 1 148 2 0.0 1 2 154 1 0.0 1 1 155 1 0.0 1 1 156 1 0.0 1 1 158 1 0.0 1 1 162 1 0.0 1 1 163 3 0.0 1 3 164 3 0.0 1 2 1 169 1 0.0 1 1 174 1 0.0 1 1 176 1 0.0 1 1 177 2 0.0 1 2 179 1 0.0 1 1 181 2 0.0 1 2 183 1 0.0 1 1 184 4 0.0 1 4 185 2 0.0 1 2 187 1 0.0 1 1 188 3 0.0 1 3 189 3 0.0 1 3 190 1 0.0 1 1 191 13 0.0 1 12 1 193 1 0.0 1 1 194 1 0.0 1 1 195 2 0.0 1 2 196 1 0.0 1 1 197 1 0.0 1 1 198 1 0.0 1 1 199 1 0.0 1 1 202 7 0.0 1 7 203 3 0.0 1 3 204 1 0.0 1 1 205 1 0.0 1 1 206 2 0.0 1 2 207 1 0.0 1 1 208 3 0.0 1 3 209 1 0.0 1 1 210 1 0.0 1 1 212 2 0.0 1 2 213 5 0.0 1 5 214 4 0.0 1 4 215 2 0.0 1 2 217 1 0.0 1 1 218 3 0.0 1 3 219 4 0.0 1 4 220 3 0.0 1 2 1 221 1 0.0 1 1 222 2 0.0 1 2 223 1 0.0 1 1 224 1 0.0 1 1 225 1 0.0 1 1 227 1 0.0 1 0 1 228 1 0.0 1 1 229 3 0.0 1 3 230 2 0.0 1 2 231 4 0.0 1 4 232 3 0.0 1 3 233 1 0.0 1 1 234 2 0.0 1 2 235 4 0.0 1 4 237 1 0.0 1 1 238 2 0.0 1 0 2 240 6 0.0 1 6 241 1 0.0 1 1 242 2 0.0 1 2 243 2 0.0 1 2 244 20 0.0 1 20 245 5 0.0 1 4 1 246 5 0.0 1 5 247 26 0.0 1 25 1 248 1575 0.0 1 1065 510 249 338287 0.0 1 329782 8505 250 254183 0.0 1 245740 8443 251 115453 0.0 1 108475 6978 Command: cutadapt --cores 1 --error-rate 0.1 --times 1 --overlap 3 --minimum-length 1 -o /var/folders/d7/0rpznrmn0rvfhz7qb56q0f2h0000gn/T/q2-CasavaOneEightSingleLanePerSampleDirFmt-oi5gnzse/104_S101_L001_R1_001.fastq.gz -p /var/folders/d7/0rpznrmn0rvfhz7qb56q0f2h0000gn/T/q2-CasavaOneEightSingleLanePerSampleDirFmt-oi5gnzse/104_S101_L001_R2_001.fastq.gz --adapter AMCVGGATTAGATACCCBG -A ACGTCATCCCCACCTTCC /var/folders/d7/0rpznrmn0rvfhz7qb56q0f2h0000gn/T/qiime2-archive-j16qc0cz/a04b10c8-5b78-4949-bb1f-7a895e9185ac/data/104_S101_L001_R1_001.fastq.gz /var/folders/d7/0rpznrmn0rvfhz7qb56q0f2h0000gn/T/qiime2-archive-j16qc0cz/a04b10c8-5b78-4949-bb1f-7a895e9185ac/data/104_S101_L001_R2_001.fastq.gz This is cutadapt 3.4 with Python 3.8.8 Command line parameters: --cores 1 --error-rate 0.1 --times 1 --overlap 3 --minimum-length 1 -o /var/folders/d7/0rpznrmn0rvfhz7qb56q0f2h0000gn/T/q2-CasavaOneEightSingleLanePerSampleDirFmt-oi5gnzse/104_S101_L001_R1_001.fastq.gz -p /var/folders/d7/0rpznrmn0rvfhz7qb56q0f2h0000gn/T/q2-CasavaOneEightSingleLanePerSampleDirFmt-oi5gnzse/104_S101_L001_R2_001.fastq.gz --adapter AMCVGGATTAGATACCCBG -A ACGTCATCCCCACCTTCC /var/folders/d7/0rpznrmn0rvfhz7qb56q0f2h0000gn/T/qiime2-archive-j16qc0cz/a04b10c8-5b78-4949-bb1f-7a895e9185ac/data/104_S101_L001_R1_001.fastq.gz /var/folders/d7/0rpznrmn0rvfhz7qb56q0f2h0000gn/T/qiime2-archive-j16qc0cz/a04b10c8-5b78-4949-bb1f-7a895e9185ac/data/104_S101_L001_R2_001.fastq.gz Processing reads on 1 core in paired-end mode ... [ 8=--] 00:00:20 882,557 reads @ 23.0 µs/read; 2.61 M reads/minute Finished in 20.35 s (23 µs/read; 2.60 M reads/minute). === Summary === Total read pairs processed: 882,557 Read 1 with adapter: 880,873 (99.8%) Read 2 with adapter: 879,295 (99.6%) Pairs that were too short: 882,240 (100.0%) Pairs written (passing filters): 317 (0.0%) Total basepairs processed: 436,835,233 bp Read 1: 218,879,356 bp Read 2: 217,955,877 bp Total written (filtered): 146,802 bp (0.0%) Read 1: 73,769 bp Read 2: 73,033 bp === First read: Adapter 1 === Sequence: AMCVGGATTAGATACCCBG; Type: regular 3'; Length: 19; Trimmed: 880873 times No. of allowed errors: 1-9 bp: 0; 10-19 bp: 1 Bases preceding removed adapters: A: 0.2% C: 0.0% G: 0.1% T: 0.0% none/other: 99.7% Overview of removed sequences length count expect max.err error counts 3 4 13790.0 0 4 4 22 3447.5 0 22 5 13 861.9 0 13 10 4 0.8 1 0 4 35 291 0.0 1 277 14 36 630 0.0 1 614 16 37 240 0.0 1 231 9 38 36 0.0 1 32 4 39 39 0.0 1 32 7 40 1748 0.0 1 1705 43 41 2328 0.0 1 2253 75 42 3719 0.0 1 3644 75 43 1438 0.0 1 1407 31 44 198 0.0 1 190 8 45 36 0.0 1 34 2 46 17 0.0 1 17 47 15 0.0 1 14 1 48 3 0.0 1 3 49 1 0.0 1 1 51 1 0.0 1 1 52 16 0.0 1 16 53 5 0.0 1 5 54 21 0.0 1 18 3 55 25 0.0 1 25 56 19 0.0 1 19 58 1 0.0 1 1 60 3 0.0 1 3 61 3 0.0 1 3 63 1 0.0 1 1 64 8 0.0 1 8 65 4 0.0 1 4 66 2 0.0 1 2 67 3 0.0 1 3 68 6 0.0 1 6 69 5 0.0 1 5 70 1 0.0 1 1 73 2 0.0 1 2 76 2 0.0 1 2 79 1 0.0 1 1 81 1 0.0 1 1 82 2 0.0 1 2 92 3 0.0 1 3 93 1 0.0 1 1 99 2 0.0 1 2 103 2 0.0 1 2 104 1 0.0 1 1 108 2 0.0 1 2 116 15 0.0 1 13 2 117 157 0.0 1 154 3 118 54 0.0 1 53 1 119 2 0.0 1 2 142 1 0.0 1 1 146 2 0.0 1 2 149 1 0.0 1 1 150 1 0.0 1 1 153 1 0.0 1 1 160 2 0.0 1 2 163 2 0.0 1 2 164 1 0.0 1 0 1 165 1 0.0 1 1 166 4 0.0 1 2 2 170 2 0.0 1 1 1 173 1 0.0 1 0 1 178 1 0.0 1 1 179 1 0.0 1 1 180 1 0.0 1 1 181 1 0.0 1 1 184 1 0.0 1 1 186 2 0.0 1 2 187 3 0.0 1 2 1 188 4 0.0 1 4 190 1 0.0 1 1 191 3 0.0 1 3 193 2 0.0 1 2 194 1 0.0 1 1 198 4 0.0 1 4 202 6 0.0 1 6 203 2 0.0 1 2 205 1 0.0 1 0 1 206 3 0.0 1 3 207 3 0.0 1 3 208 2 0.0 1 2 209 1 0.0 1 1 210 2 0.0 1 2 211 5 0.0 1 5 212 51 0.0 1 50 1 213 60 0.0 1 59 1 214 18 0.0 1 17 1 215 10 0.0 1 10 216 3 0.0 1 2 1 217 1 0.0 1 1 218 3 0.0 1 3 219 2 0.0 1 2 220 1 0.0 1 1 222 1 0.0 1 1 223 3 0.0 1 3 225 1 0.0 1 0 1 226 1 0.0 1 1 228 3 0.0 1 3 229 2 0.0 1 2 230 3 0.0 1 3 232 1 0.0 1 1 233 1 0.0 1 1 234 2 0.0 1 2 235 2 0.0 1 2 236 3 0.0 1 1 2 237 3 0.0 1 3 239 3 0.0 1 2 1 240 1 0.0 1 1 241 12 0.0 1 10 2 242 8 0.0 1 8 243 5 0.0 1 2 3 244 3 0.0 1 3 245 88 0.0 1 86 2 246 68 0.0 1 64 4 247 276 0.0 1 260 16 248 16195 0.0 1 15756 439 249 55546 0.0 1 54233 1313 250 146251 0.0 1 142724 3527 251 651020 0.0 1 636410 14610 === Second read: Adapter 2 === Sequence: ACGTCATCCCCACCTTCC; Type: regular 3'; Length: 18; Trimmed: 879295 times No. of allowed errors: 1-9 bp: 0; 10-18 bp: 1 Bases preceding removed adapters: A: 0.2% C: 0.0% G: 0.2% T: 0.0% none/other: 99.6% Overview of removed sequences length count expect max.err error counts 3 66 13790.0 0 66 35 284 0.0 1 244 40 36 611 0.0 1 590 21 37 228 0.0 1 218 10 38 34 0.0 1 31 3 39 39 0.0 1 18 21 40 1751 0.0 1 1706 45 41 2327 0.0 1 2254 73 42 3689 0.0 1 3595 94 43 1451 0.0 1 1410 41 44 199 0.0 1 187 12 45 36 0.0 1 33 3 46 18 0.0 1 17 1 47 15 0.0 1 15 48 3 0.0 1 3 51 3 0.0 1 3 52 16 0.0 1 16 53 5 0.0 1 5 54 24 0.0 1 22 2 55 24 0.0 1 23 1 56 19 0.0 1 19 58 1 0.0 1 1 61 1 0.0 1 1 65 2 0.0 1 1 1 66 1 0.0 1 1 67 3 0.0 1 3 68 5 0.0 1 5 69 4 0.0 1 4 73 2 0.0 1 2 76 2 0.0 1 2 79 1 0.0 1 1 81 1 0.0 1 1 82 2 0.0 1 2 84 2 0.0 1 0 2 92 3 0.0 1 3 93 3 0.0 1 1 2 95 2 0.0 1 0 2 96 6 0.0 1 0 6 97 2 0.0 1 0 2 98 2 0.0 1 0 2 99 2 0.0 1 2 103 1 0.0 1 1 104 1 0.0 1 1 108 2 0.0 1 2 112 1 0.0 1 1 116 15 0.0 1 13 2 117 161 0.0 1 159 2 118 56 0.0 1 56 119 3 0.0 1 3 124 2 0.0 1 2 141 7 0.0 1 0 7 142 4 0.0 1 1 3 145 3 0.0 1 3 146 2 0.0 1 2 147 1 0.0 1 1 148 8 0.0 1 8 149 2 0.0 1 2 150 1 0.0 1 1 156 4 0.0 1 4 158 2 0.0 1 2 160 2 0.0 1 2 163 2 0.0 1 2 164 1 0.0 1 1 165 2 0.0 1 1 1 166 5 0.0 1 4 1 168 1 0.0 1 0 1 170 2 0.0 1 2 172 1 0.0 1 1 173 2 0.0 1 2 175 1 0.0 1 1 178 1 0.0 1 1 179 1 0.0 1 1 180 4 0.0 1 4 181 1 0.0 1 1 182 4 0.0 1 4 184 1 0.0 1 1 186 3 0.0 1 3 187 4 0.0 1 4 188 4 0.0 1 4 189 3 0.0 1 3 190 1 0.0 1 1 191 3 0.0 1 3 193 2 0.0 1 2 194 1 0.0 1 1 198 4 0.0 1 4 202 5 0.0 1 4 1 203 2 0.0 1 2 205 1 0.0 1 1 206 4 0.0 1 4 207 8 0.0 1 8 208 3 0.0 1 3 209 4 0.0 1 4 210 3 0.0 1 3 211 3 0.0 1 3 212 50 0.0 1 50 213 65 0.0 1 64 1 214 19 0.0 1 18 1 215 10 0.0 1 10 216 1 0.0 1 1 217 1 0.0 1 1 218 4 0.0 1 2 2 219 6 0.0 1 6 222 2 0.0 1 1 1 223 3 0.0 1 3 224 1 0.0 1 1 225 3 0.0 1 3 226 3 0.0 1 3 228 3 0.0 1 3 230 4 0.0 1 4 232 2 0.0 1 1 1 233 3 0.0 1 1 2 236 1 0.0 1 1 239 1 0.0 1 1 241 2 0.0 1 2 244 11 0.0 1 11 246 9 0.0 1 3 6 247 27 0.0 1 26 1 248 1704 0.0 1 1258 446 249 461058 0.0 1 452886 8172 250 306457 0.0 1 299179 7278 251 98591 0.0 1 93758 4833