Running external command line application(s). This may print messages to stdout and/or stderr. The command(s) being run are below. These commands cannot be manually re-run as they will depend on temporary files that no longer exist. Command: run_dada_paired.R /tmp/tmp6_o57z58/forward /tmp/tmp6_o57z58/reverse /tmp/tmp6_o57z58/output.tsv.biom /tmp/tmp6_o57z58/track.tsv /tmp/tmp6_o57z58/filt_f /tmp/tmp6_o57z58/filt_r 247 247 11 10 2.0 2.0 2 consensus 1.0 1 1000000 R version 3.5.1 (2018-07-02) Loading required package: Rcpp DADA2: 1.10.0 / Rcpp: 1.0.3 / RcppParallel: 4.4.4 1) Filtering .............................................................................................................................................................................................................................. 2) Learning Error Rates 273957296 total bases in 1160836 reads from 5 samples will be used for learning the error rates. 275118132 total bases in 1160836 reads from 5 samples will be used for learning the error rates. 3) Denoise remaining samples ......................Error in dada_uniques(names(derep[[i]]$uniques), unname(derep[[i]]$uniques), : Memory allocation failed. Calls: dada -> dada_uniques Execution halted Warning message: system call failed: Cannot allocate memory Traceback (most recent call last): File "/home/qiime2/miniconda/envs/qiime2-2020.2/lib/python3.6/site-packages/q2_dada2/_denoise.py", line 257, in denoise_paired run_commands([cmd]) File "/home/qiime2/miniconda/envs/qiime2-2020.2/lib/python3.6/site-packages/q2_dada2/_denoise.py", line 36, in run_commands subprocess.run(cmd, check=True) File "/home/qiime2/miniconda/envs/qiime2-2020.2/lib/python3.6/subprocess.py", line 418, in run output=stdout, stderr=stderr) subprocess.CalledProcessError: Command '['run_dada_paired.R', '/tmp/tmp6_o57z58/forward', '/tmp/tmp6_o57z58/reverse', '/tmp/tmp6_o57z58/output.tsv.biom', '/tmp/tmp6_o57z58/track.tsv', '/tmp/tmp6_o57z58/filt_f', '/tmp/tmp6_o57z58/filt_r', '247', '247', '11', '10', '2.0', '2.0', '2', 'consensus', '1.0', '1', '1000000']' returned non-zero exit status 1. During handling of the above exception, another exception occurred: Traceback (most recent call last): File "/home/qiime2/miniconda/envs/qiime2-2020.2/lib/python3.6/site-packages/q2cli/commands.py", line 328, in __call__ results = action(**arguments) File "", line 2, in denoise_paired File "/home/qiime2/miniconda/envs/qiime2-2020.2/lib/python3.6/site-packages/qiime2/sdk/action.py", line 245, in bound_callable output_types, provenance) File "/home/qiime2/miniconda/envs/qiime2-2020.2/lib/python3.6/site-packages/qiime2/sdk/action.py", line 390, in _callable_executor_ output_views = self._callable(**view_args) File "/home/qiime2/miniconda/envs/qiime2-2020.2/lib/python3.6/site-packages/q2_dada2/_denoise.py", line 272, in denoise_paired " and stderr to learn more." % e.returncode) Exception: An error was encountered while running DADA2 in R (return code 1), please inspect stdout and stderr to learn more.