Topics tagged quality-filter

Topic	Replies	Views	Activity
Confusing quality plot User Support quality-filter , quality	4	180	September 4, 2023
Reasons for PacBio read loss during denoisong User Support dada2 , quality-filter	6	462	July 23, 2023
quality-filter is... making all my reverse reads forward reads? User Support quality-filter	2	267	July 16, 2023
quality-filter has no action 'q-score-joined' Technical Support quality-filter	2	350	May 12, 2023
Bad quality - plot quality User Support quality-filter , quality	5	384	November 22, 2022
Losing a whole sample after denoising. User Support dada2 , quality-filter	9	347	August 21, 2022
Quality-filter "'NoneType' object is not subscriptable" Technical Support quality-filter , mock-communities	10	609	January 9, 2022
Deblur error : all of the sequences are artifacts like PhiX or adapter. User Support deblur , quality-filter	14	718	November 26, 2021
Quality control General Discussion quality-filter , quality-control	4	1323	September 2, 2021
Why do the DADA2 default setting have such a low PHRED score? General Discussion dada2 , quality-filter , phred , quality-control	12	4096	August 13, 2021
Error: QIIME 2 plugin 'quality-filter' has no action 'q-score-joined' Technical Support quality-filter	3	1464	January 9, 2021
qiime quality-filter q-score-joined parameters User Support quality-filter	6	3122	October 11, 2020
About joining paired reads and quality control User Support quality-filter , vsearch	4	1922	September 12, 2020
Trimming MiSeq sequencing data individually Technical Support dada2 , quality-filter , trim	4	782	August 22, 2020
Trimming length in dada2 in PE data (2 x 300 bp) User Support dada2 , quality-filter , trim	3	1068	January 4, 2020
Bizarre sequence quality from a Nature paper's NCBI data General Discussion quality-filter , quality-control	2	769	November 27, 2019
Why shouldn't I just filter based on quality score and throw away those with low scores? User Support dada2 , deblur , quality-filter , best-of-the-forum	3	917	October 12, 2019
merge quality-filter q-score-joined sequences User Support quality-filter	2	526	July 19, 2019
How to find the appropriate value of expected errors(--p-max-ee)? General Discussion dada2 , quality-filter , feature-table	1	2333	December 4, 2018
Filtering for private ASVs General Discussion quality-filter , asv	10	3517	December 23, 2018
Can anyone explain the interactive quality plots? User Support quality-filter	5	3540	December 16, 2018
Preparing data for analysis with dada2 denoising User Support dada2 , filtering , quality-filter , gneiss	4	1489	October 20, 2018
Quality trimming User Support quality-filter	8	1514	October 18, 2018
Is trimmomatic necessary before dada2? User Support dada2 , filtering , quality-filter , merge	3	2604	September 30, 2018
Dada2 with joined sequences User Support dada2 , quality-filter	4	1230	August 17, 2018
Qiime 2 database and data import User Support quality-filter	4	1706	April 16, 2018
Quality-filter q-score-joined file retains all reads User Support quality-filter	8	3312	April 12, 2018
DADA2 and quality filtering? User Support dada2 , quality-filter	3	5147	March 9, 2018
Visualization of quality-filter q-score-joined User Support metadata , quality-filter	2	1154	February 11, 2018
Quality filter paired end fastq's User Support quality-filter , paired-end , fastq	6	3349	January 23, 2018