Topics tagged normalization

Topic	Replies	Views	Activity
Before I get into CLR transformation, is there any step to change my OTU table ? General Discussion feature-table , normalization	8	1221	May 18, 2023
Is it necessary to transform the read count data into relative abundance form before normalization when analyzing using two different ecosystems (different batches)? General Discussion normalization , relative-frequency , correlation	2	701	April 9, 2023
How can I change the Aldex .clr result in R to the table file which can be downloaded ? Other Bioinformatics Tools r , normalization	2	407	April 5, 2023
q2-repeat-rarefy: QIIME2 plugin for generating the average rarefied table for library size normalization using repeated rarefaction Plugins feature-table , rarefaction , normalization , library	1	1614	March 22, 2023
Obtain normalized data - ANCOM User Support export , ancom , normalization	8	1019	March 7, 2022
q2-srs: QIIME2 plugin for library size normalization by scaling with ranked subsampling (SRS) Community Contributions tutorial , rarefaction , plugin-development , normalization	3	1452	December 6, 2021
"z-score" for sparse data (taxon distribution) General Discussion normalization	1	544	September 1, 2021
SRS: Alternative tool for library size normalisation General Discussion rarefaction , plugin-development , normalization	16	3321	December 1, 2020
Quantification and raw OTU abundance comparison General Discussion normalization	2	1198	October 7, 2020
CSS normalization of sequence counts with metagenomeSeq in R Tutorials normalization	3	5734	December 12, 2019
Normalization for microbiome 16s sequence analysis General Discussion 16s , normalization	9	4769	June 27, 2019
Use of rarefacted Table General Discussion otus , rarefaction , normalization	3	2834	May 15, 2019
How to normalize bacterial abundance for unequal sample size? User Support rarefaction , alpha-rarefaction , normalization	9	5176	January 12, 2019
Way to normalization OTU tables User Support normalization	3	2788	October 15, 2018
Wisconsin standardization on rarefied data? User Support rarefaction , normalization	4	973	September 7, 2018
Normalization use User Support normalization	8	1675	July 30, 2018
Batch Correction - Dealing With Negative Values for Diversity Analysis User Support diversity , normalization , batch-effects	12	4821	June 30, 2018
Can we get the centered log ratio transformed feature table in qiime 2? User Support normalization	7	1325	April 23, 2018
Is there a normalized_table.py in QIIME2? User Support normalization	9	4161	March 9, 2018
DESeq2/metagenomeSeq support for QIIME2 Ideas and Suggestions pending-development , normalization	2	3039	December 22, 2017
Normalization necessary when converting to relative frequencies? User Support normalization , relative-frequency	2	1229	December 1, 2017