Filter specific ASVs from feature table
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1
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71
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March 19, 2024
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DADA2, odd results from denoising stats (varying input passed filter, low number of reads, low % of input merged and ASVs)
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4
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174
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February 29, 2024
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Abnormal high percentage of unclassified bacteria
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2
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201
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February 12, 2024
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Error message after using ReSCRIPT for filtering for homopolymers
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5
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156
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December 23, 2023
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Removal of mitochondria and chloroplast - filter sequence vs filter taxonomy
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7
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411
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November 18, 2023
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Confirmation on code that removes Homopolymers
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4
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305
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September 14, 2023
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Error with filter-features-conditionally on picrust2 outputs
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3
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249
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August 10, 2023
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Getting low feature counts while using dada2 plugin
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18
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314
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June 23, 2023
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Filtered OTU table using spike-in mock community to get actual read count
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6
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254
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May 21, 2023
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DADA2: losing a lot of reads
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7
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457
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April 13, 2023
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LOW percentage of input merged
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5
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427
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March 27, 2023
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Filtering Samples in a Metabarcoding Dataset by Source Without Restarting the Pipeline
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2
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158
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March 21, 2023
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How to filter out contamination at samples
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2
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466
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February 18, 2023
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Is my DADA2 outputs nomarl?
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3
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353
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January 16, 2023
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Filtering phyloseq object by otu id instead of the target level
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1
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567
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October 28, 2022
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How to find sample IDs from publicly available fastq.gz
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3
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249
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August 26, 2022
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Qiime filter feature table by sequences
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3
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467
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September 19, 2022
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filtering with metada doesn't work
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10
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532
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July 29, 2022
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silva138 16S database contains eukaryota after filtering
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3
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1264
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May 30, 2022
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Results after taxonomy filtering
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2
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253
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May 29, 2022
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Importing Multiplexed Paired End Sequence With Adaptors --> Demultiplexed Sequences
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4
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1065
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December 24, 2021
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DADA2 error (same error for every try)
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2
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585
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July 29, 2021
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What are the criteria for choosing the optimal "--p-min-fold-parent-over-abundance" parameter in dada2?
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2
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668
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August 10, 2021
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Problems Creating a Compatible Open Reference OTU Table for PICRUSt
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2
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528
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July 17, 2021
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Filtering output sequences below a certain length
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2
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993
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May 1, 2021
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How to retain only species or genus level in feature table
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3
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1186
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April 2, 2021
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Rescript filter-taxa error
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3
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818
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March 20, 2021
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Issue filtering multiple specific taxa out of feature table
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5
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1402
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March 20, 2021
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differencial abundance with ANCOM
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4
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693
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March 16, 2021
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dada2 trim and trunc values determination after paired end demultiplex
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4
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550
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February 10, 2021
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