|
Primer show up again after removal using cutadapt in qiime2 DADA2
|
|
1
|
18
|
April 18, 2024
|
|
Patterns in merging using DADA2
|
|
3
|
45
|
April 17, 2024
|
|
dada2 demultiplexed-seqs error
|
|
1
|
12
|
April 17, 2024
|
|
how can I merge a feature table with taxonomy classifications?
|
|
1
|
11
|
April 17, 2024
|
|
many unassigned fungal sequences
|
|
6
|
102
|
April 16, 2024
|
|
Different Sequencing Data -> Different Quality
|
|
3
|
36
|
April 10, 2024
|
|
Consistency of feature Ids after merging rep-seqs.qza files
|
|
1
|
30
|
April 6, 2024
|
|
very short sequence length on demux
|
|
10
|
152
|
April 3, 2024
|
|
DADA2 Error rates could not be estimated -- but I don't know why
|
|
1
|
53
|
March 30, 2024
|
|
Denoise paired issues
|
|
8
|
100
|
March 27, 2024
|
|
Primer orientations in illumina miseq metabarcoding data
|
|
1
|
57
|
March 26, 2024
|
|
Remove host sequences prior to Dada2
|
|
1
|
49
|
March 26, 2024
|
|
Plugin error from feature-classifier：A worker process managed by the executor was unexpectedly terminated
|
|
4
|
64
|
March 24, 2024
|
|
Chimera removal taking VERY LONG time
|
|
2
|
74
|
April 18, 2024
|
|
I fell into the swamp of 273bp after trimming adapters and primers through cutadapt...
|
|
8
|
105
|
April 18, 2024
|
|
Analysis with DADA2
|
|
4
|
156
|
April 18, 2024
|
|
Dada2 Parameters choice
|
|
9
|
131
|
March 13, 2024
|
|
dada2 deniose-paired never finishes; too many samples or too big input?
|
|
5
|
91
|
April 14, 2024
|
|
PCoA result differed based on primer trimming methods
|
|
2
|
77
|
April 7, 2024
|
|
'--p-chimera-method none' Still removing almost all reads due to being chimeric - 16s PacBio full length
|
|
6
|
164
|
April 7, 2024
|
|
Plugin error from dada2: An error was encountered while running DADA2 in R (return code 1) [removing chimeras?]
|
|
12
|
128
|
April 6, 2024
|
|
dada2 denoise-ccs, how to run without adapter
|
|
3
|
101
|
April 2, 2024
|
|
16s Pacbio analysis issue
|
|
10
|
164
|
April 2, 2024
|
|
Dada2 and big dataset - optimize or/and split?
|
|
9
|
153
|
March 31, 2024
|
|
q2-dada2 and NextSeq amplicon data
|
|
3
|
193
|
February 26, 2024
|
|
How to handle small number of samples in one run on DADA2
|
|
6
|
113
|
March 27, 2024
|
|
Understanding DADA2 parameters
|
|
1
|
138
|
March 20, 2024
|
|
Problem processing Element AVITI 16S data (most discarded despite high phred scores)
|
|
22
|
294
|
March 26, 2024
|
|
Cannot run denoise pluging
|
|
3
|
94
|
March 25, 2024
|
|
dada2 denoise-ccs, plugin error [return code 1]
|
|
6
|
137
|
March 23, 2024
|
