Topics tagged asv

Topic	Replies	Views	Activity
16S full length nanopore to ASVs (new approach?) General Discussion asv , nanopore , sequences	6	38	April 18, 2024
can I use qiime 2 to get ASVs? User Support asv	2	116	January 4, 2024
Converting ASVs from DADA2 to OTUs User Support dada2 , otus , asv	12	435	November 10, 2023
Calcualte Unweighted Unifrac and Weighted Unifrac from ASV counts alone? User Support unifrac , asv	2	148	October 23, 2023
OTU vs ASV Analysis User Support dada2 , otus , asv	4	467	October 13, 2023
ASV or OTU ? What do I have? User Support otus , alpha , asv	4	276	October 2, 2023
How to start analysis with ASV data? User Support dada2 , taxonomy , asv	10	868	September 3, 2023
Criteria to discard ASVs User Support dada2 , taxonomy , asv	7	528	July 25, 2023
How primer sequences in raw files influence chimera detection in ASV estimation? User Support dada2 , asv	5	323	July 2, 2023
Do we need rep-seqs when simulating data? User Support feature-classifier , asv	4	263	January 13, 2023
PICRUST2 removing all ASV sequence Other Bioinformatics Tools dada2 , picrust , asv	6	789	March 21, 2023
Is it best to work on abundance tables of ASVs or taxa? General Discussion taxonomy , feature-table , 16s , asv , best-of-the-forum	5	1148	May 23, 2022
How to create a list of all observed features (ASVs) to compare it with core-features User Support asv , core-features	7	1114	September 2, 2021
ASV naming: reviewer reply General Discussion feature-table , asv	4	914	June 4, 2021
I run DADA2 and got significantly different ASV numbers at different machines with the same data and setting. User Support dada2 , asv	5	727	June 20, 2021
How do I perform diversity analysis (e.g. alpha diversity) on ASV number from different runs General Discussion diversity , asv	2	655	May 7, 2021
Passing ASVs into vsearch for Ghost Tree Analysis User Support dada2 , vsearch , ghost-tree , asv	4	671	March 15, 2021
Creating & Exporting ASV tables Technical Support dada2 , export , asv	5	3200	December 19, 2020
OTU picking with DADA2 input User Support dada2 , otus , vsearch , asv	3	1083	September 25, 2020
How to define the rare and abundant taxa from the ASV feature table? General Discussion dada2 , asv	2	1056	August 22, 2020
Pielou’s evenness, Faith's PD and Shannon’s diversity indices for ASVs instead of "species" General Discussion otus , alpha , asv	6	2723	June 1, 2020
Trimming ASVs in table without reprocessing User Support asv	3	443	April 26, 2020
Is it a reasonable to delete all unclassified and uncultured ASVs in species level ? General Discussion taxonomy , asv	4	1333	January 21, 2020
ASV IDs in publication General Discussion asv , publication	6	1017	December 13, 2019
ASVs versus OTUs, is conversion possible General Discussion otus , asv	1	1762	August 23, 2019
ASV naming convention and replicability User Support asv	3	789	August 14, 2019
OTU clustering using ASV table User Support otus , asv	4	1522	June 17, 2019
Tracking which ASV is from which sample User Support asv	2	912	April 4, 2019
What is the definition of sequence variants? General Discussion asv	0	1384	December 28, 2018
Filtering for private ASVs General Discussion quality-filter , asv	10	3517	December 23, 2018