Silva database / own taxonomy database
|
|
5
|
449
|
September 20, 2024
|
SILVA 138.2 ssu-nr99 database, only 6 levels
|
|
3
|
377
|
September 18, 2024
|
Merge CO1 artifacts
|
|
3
|
24
|
September 17, 2024
|
Using silva-138 pre-trained classifier
|
|
7
|
957
|
September 13, 2024
|
Kraken2 error: AttributeError: dict object has no attribute 'type'
|
|
10
|
118
|
August 30, 2024
|
Snakemake pipelines for generating taxonomy classifiers
|
|
7
|
353
|
July 25, 2024
|
Issue with qiime rescript evaluate-fit-classifier - wrong classification
|
|
4
|
57
|
August 24, 2024
|
Taxonomic Data: Using 18S-Nemabase in Qiime2 instead of Silva?
|
|
18
|
809
|
July 23, 2024
|
Training of naivebyes classifier on Qiime databse
|
|
3
|
57
|
August 5, 2024
|
Training Silva 138 data base to use in qiime1
|
|
1
|
56
|
July 3, 2024
|
Some taxonomic units, such as class, order, and species, cannot be classified
|
|
3
|
95
|
August 2, 2024
|
Different --p-min-frequency arguments result in different order of importance of the taxonomic groups
|
|
3
|
77
|
August 1, 2024
|
Classify Consensus Blast error with nt Database
|
|
2
|
66
|
July 30, 2024
|
How to train the classifier for V3-V4 region with 99% identity using full length seuqnces from new relase of GreenGenes-2022??
|
|
9
|
1226
|
June 20, 2024
|
Taxa collapse shows too general taxonomic assignations
|
|
12
|
232
|
July 21, 2024
|
Alpha and Beta Diversity Analyses
|
|
5
|
121
|
June 18, 2024
|
Merging species derived from spiked species
|
|
0
|
93
|
June 3, 2024
|
Plugin effor from feature-classifier: BLAST6 file is empty.
|
|
6
|
119
|
July 14, 2024
|
Microbiome Taxa Analysis for two factor interaction
|
|
2
|
99
|
June 12, 2024
|
Issues with taxonomic classification UNITE 9.0 and 10.0
|
|
3
|
278
|
July 7, 2024
|
p-exclude not working in qiime taxa filter-table
|
|
3
|
81
|
July 6, 2024
|
How to import fasta files which have undergone vsearch based QC
|
|
2
|
69
|
July 5, 2024
|
Taxonomic Classification Issues in Meiofauna Analysis using QIIME2 and SILVA 138 and 138.1
|
|
4
|
95
|
June 30, 2024
|
Weird letters and numbers after taxa ID - f__Bacillaceae_H_294103
|
|
7
|
201
|
June 29, 2024
|
bitscore and evalue after running qiime feature-classifier classify-consensus-vsearch
|
|
4
|
131
|
June 23, 2024
|
qiime feature-classifier classify-sklearn Missing option
|
|
5
|
124
|
June 24, 2024
|
Abundant taxa analysis using statistical tests
|
|
3
|
158
|
June 21, 2024
|
Train the Silva database (Qiime2) by extracting two types of primers: Region v3-v4 and v4 of the 16S rRNA
|
|
3
|
419
|
June 19, 2024
|
The parameter perc_identity for classify_consensus_vsearch affects runtime?
|
|
9
|
109
|
June 16, 2024
|
Which file to use to train the classifier?
|
|
3
|
174
|
June 9, 2024
|