Topics tagged taxonomy

Topic	Replies	Views	Activity
How to train a UNITE classifier using RESCRIPt Tutorials tutorial , taxonomy , its , feature-classifier , rescript , unite	4	561	January 19, 2024
Alpha diversity Simpson Index Technical Support taxonomy , feature-classifier	2	98	February 19, 2024
Why don't people use pca or pcoa for analysing microbial co-occurance General Discussion taxonomy	1	79	January 17, 2024
Abnormal high percentage of unclassified bacteria User Support filtering , demux , taxonomy , feature-table , dada2 , feature-classifier , diversity	2	201	February 12, 2024
Processing, filtering, and evaluating the SILVA database (and other reference sequence data) with RESCRIPt Tutorials plugin-development , feature-classifier , tutorials , taxonomy , rescript	22	46101	January 10, 2024
Seeking Advice on Analyzing Overlap in Taxonomic Classification Results User Support taxonomy , feature-classifier	12	168	February 8, 2024
importing reference database for taxonomic assignment User Support taxonomy , import	5	164	February 6, 2024
Taxonomy names confusion Community Plugin Support greengenes2 , taxonomy	3	171	January 4, 2024
UNITE, Include certain species of fungi User Support taxonomy , feature-classifier , rescript , unite	2	100	February 5, 2024
UNITE taxonomic annotation User Support taxonomy , feature-classifier	2	156	February 4, 2024
Manually Adding Positive Controls to classifier or reference database General Discussion taxonomy , feature-table , rescript	1	426	December 29, 2023
Greengenes 2022.10 - output "gut metagenome" General Discussion taxonomy	1	84	December 21, 2023
Is there a pretrainer classifer for silva 138.1 specifically for 515-806 V4 sequences available on this website? General Discussion taxonomy , silva	1	178	December 15, 2023
Taxa barplot problem with family, order and species General Discussion taxonomy , taxa , barplot	39	517	December 13, 2023
Many questions about clustering in the qiime vsearch plugin User Support taxonomy , feature-classifier , otus , sample-classifier	10	373	January 11, 2024
Greengene2 database User Support greengenes2 , taxonomy	2	246	January 1, 2024
ITS fungal feature-classifier classify-sklearn error User Support taxonomy , feature-classifier	18	453	January 1, 2024
How could I combined featuure table and taxamony for Enterotype identification? Technical Support taxonomy , feature-table	9	218	December 28, 2023
Best sequence database for classifying 16s v4 sequences of human stool samples General Discussion taxonomy	3	315	November 25, 2023
Is my command right for classifying ? (I changed my classifier command to use q2-feature-classifier) General Discussion taxonomy , feature-table , feature-classifier , r	4	266	November 22, 2023
Training classifier for taxonomic analysis General Discussion taxonomy , feature-classifier	2	391	November 20, 2023
taxonomic classification User Support taxonomy , feature-classifier	4	352	December 21, 2023
Support with greengenes taxonomy. Output with [ ] User Support taxonomy , feature-classifier	4	188	December 17, 2023
Using RESCRIPt's 'extract-seq-segments' to extract reference sequences without PCR primer pairs. Tutorials its , trnl , co1 , ssu , lsu , rescript , taxonomy , tutorial , feature-classifier	7	3965	November 14, 2023
Taxa barplot up to genus by grouping the rarest genus without using excel User Support taxonomy , barplot	4	174	December 15, 2023
classify-sklearn automatically assigns Kingdom even if sequence is unassigned User Support taxonomy , feature-classifier	2	155	December 14, 2023
Using Greengenes2 for Naive Bayes V3V4 classifier Technical Support greengenes2 , taxonomy , feature-classifier	4	367	December 14, 2023
qiime 2 shogun taxonomy classification Community Plugin Support taxonomy , feature-classifier	3	136	November 8, 2023
Issue with feature-classifier (single sample vs multiple samples) User Support taxonomy , feature-classifier	6	233	December 7, 2023
How to extract taxon name unique General Discussion taxonomy	2	173	November 3, 2023