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TEF1 metabarcoding: Should I use BLAST or VSEARCH instead of Naive Bayes?
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4
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180
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March 26, 2025
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Original formating of BOLD data
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2
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126
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March 25, 2025
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SILVA vs PR2 database using qiime2
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1
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335
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March 19, 2025
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Contents of imported database
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6
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122
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March 18, 2025
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Issue with Taxonomic Classification Greengene2 for 16S V4 region - Unassigned data
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5
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342
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March 17, 2025
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Unable to find all taxon as a result of taxanomic analysis
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1
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88
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March 12, 2025
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ASV with missing taxonomic annotation
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2
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197
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March 11, 2025
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Importing COI data from BOLD
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2
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94
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March 8, 2025
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Is it valid to rename ASVs classified as ‘uncultivated’ as ‘unclassified’?
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9
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177
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March 5, 2025
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Greengenes2 2024.09
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0
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4982
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October 8, 2024
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how to phylogenetically analyse 16S genes recovered from metagenome?
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2
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131
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March 3, 2025
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Taxonomy file has only 30 features
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2
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90
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March 3, 2025
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Big data analysis in QIIME2: how to obtain the level-7.csv
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1
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80
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February 19, 2025
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Taxonomic Classification Only Reaching Genus Level (6) – Need Help with Deeper Classification
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3
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310
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February 18, 2025
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Impact of number of bootstraps on RDP classification
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1
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104
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February 4, 2025
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classifying sequences-
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6
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149
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January 20, 2025
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Filtering eukaryotes from SILVA database
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3
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181
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January 17, 2025
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qiime2 feature-classifier fit-classifier-naive-bayes KILLED
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1
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89
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January 17, 2025
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Database for soil metagenomic 16S: Phytopathogenic?
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0
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46
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January 14, 2025
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Linking Greengenes2 to another feature table
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5
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167
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January 14, 2025
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How to train a GTDB SSU classifier using RESCRIPt
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2
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2703
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July 23, 2024
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Placing filtered ASV sequences into guide tree, per clade
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3
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115
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January 10, 2025
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Introducing Greengenes2 2022.10
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71
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32483
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October 11, 2024
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Assistance with Genus-Level Classification and Filtering ASV/OTUs
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16
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447
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January 5, 2025
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How to train a UNITE classifier using RESCRIPt
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8
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2464
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January 3, 2025
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Add taxonomy to biom file
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2
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79
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December 10, 2024
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Taxonomic classifiers for Galaxy QIIME2
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1
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86
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December 9, 2024
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Not able to find E. coli in my taxonomy file
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3
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98
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December 5, 2024
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Eukaryotes (fungi; p__Basidiomycota) in the taxa bar plots of 16S rRNA data
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4
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120
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December 3, 2024
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Taxonomic databases for sidle (Ampliseq pipeline, multiregion sidle option)
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8
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273
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November 29, 2024
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