Topics tagged silva

Topic	Replies	Views	Activity
problem with feature-classifier classify-consensus-vsearch Silva feature-classifier , taxonomy , silva	7	900	March 17, 2023
How to interpret SILVA taxonomic classifications Silva taxonomy , silva	2	602	February 9, 2023
Downloading SILVA database Silva silva	2	4390	January 30, 2023
Redoing analysis from QIIME 1, Archaea has mostly disappeared Silva taxonomy , silva	5	574	November 24, 2022
Differences of unassigned, unidentified, uncultured taxa. Silva taxonomy , silva	1	1256	June 9, 2022
silva138 16S database contains eukaryota after filtering Silva filtering , silva	3	1752	May 30, 2022
SILVA 138 assigning incorrect species Silva taxonomy , silva	3	1524	February 5, 2022
Can I use different versions of Silva for taxonomic classification and fragment insertion Silva feature-classifier , taxonomy , silva , fragment-insertion	5	723	January 9, 2022
Importing Multiplexed Paired End Sequence With Adaptors --> Demultiplexed Sequences Silva filtering , metadata , import , demux , feature-classifier , multiplexed , silva , 16s , cutadapt	4	1279	December 24, 2021
Questions about the SILVA 132 QIIME-compatible database, and using it for taxonomic classification of 16S rRNA amplicons Silva feature-classifier , taxonomy , silva	5	2766	September 27, 2021
Silva 132 Database, which taxonomy & reference sequence files to select for classifier training? Silva import , feature-classifier , taxonomy , silva	7	1949	March 23, 2021
ERROR in Downstream analyses (taxonomic) for "Microbiome analyst" Silva feature-classifier , taxonomy , silva	1	1002	February 16, 2021
RESCRIPt, SEPP and database correlation Silva silva , sepp , rescript	8	1754	February 3, 2021
Invalid character in sequence: b'U' Silva feature-classifier , silva	2	1095	February 14, 2021
separate archaea-only database from Silva database Silva import , silva	4	1306	February 8, 2021
Silva 138.1, which database do I download? Ref NR 99 or Ref? Silva feature-classifier , silva	3	8758	January 7, 2021
How do I choose the database for the archaea amplicons anotation. Silva silva	6	1387	December 23, 2020
q2-fragment-insertion with silva v138 Silva silva , fragment-insertion	3	1993	January 8, 2021
Aligned sequences and Rescript Silva silva , rescript	6	1127	October 14, 2020
Resources for using classify-consensus-blast on 16S data Silva feature-classifier , taxonomy , greengenes , silva	4	1534	August 8, 2020
Silva 138 for Qiime2 Silva silva	12	8391	December 11, 2024
Taxonomic classification 'Taxon' field discrepancies Silva feature-classifier , taxonomy , ancom , silva	4	967	July 17, 2020
Feature Classifier only for V3 region Silva feature-classifier , taxonomy , silva	2	466	July 17, 2020
How to deal with the trailing number in taxa table? Silva feature-classifier , taxonomy , silva	2	754	March 22, 2020
classify-sklearn - Plugin error from feature-classifier: pop from empty list Silva feature-classifier , taxonomy , silva	3	1692	March 20, 2020
Memory and Classification for 18S Silva feature-classifier , silva , its	7	1248	April 13, 2020
Why does Greengenes assign more features at the class and order ranks than Silva? Silva taxonomy , greengenes , silva	8	2991	March 6, 2020
Insertion tree has dramatically reduced number of taxa Silva qiita , phylogeny , silva	5	592	April 3, 2020
Plugin error from feature-classifier when running Silva-132 Silva feature-classifier , taxonomy , silva	4	1912	February 28, 2020
Which Silva .txt file to use? Silva taxonomy , silva	4	2297	March 23, 2020