Topics tagged silva

Topic	Replies	Views	Activity
Downloading SILVA database General Discussion silva	2	3541	January 30, 2023
Redoing analysis from QIIME 1, Archaea has mostly disappeared User Support taxonomy , silva	5	535	November 24, 2022
Differences of unassigned, unidentified, uncultured taxa. General Discussion taxonomy , silva	1	1154	June 9, 2022
silva138 16S database contains eukaryota after filtering User Support filtering , silva	3	1667	May 30, 2022
SILVA 138 assigning incorrect species User Support taxonomy , silva	3	1494	February 5, 2022
Can I use different versions of Silva for taxonomic classification and fragment insertion User Support feature-classifier , taxonomy , silva , fragment-insertion	5	670	January 9, 2022
Importing Multiplexed Paired End Sequence With Adaptors --> Demultiplexed Sequences User Support filtering , metadata , import , demux , feature-classifier , multiplexed , silva , 16s , cutadapt	4	1234	December 24, 2021
Questions about the SILVA 132 QIIME-compatible database, and using it for taxonomic classification of 16S rRNA amplicons User Support feature-classifier , taxonomy , silva	5	2712	September 27, 2021
Silva 132 Database, which taxonomy & reference sequence files to select for classifier training? User Support import , feature-classifier , taxonomy , silva	7	1905	March 23, 2021
ERROR in Downstream analyses (taxonomic) for "Microbiome analyst" Other Bioinformatics Tools feature-classifier , taxonomy , silva	1	988	February 16, 2021
RESCRIPt, SEPP and database correlation Library Plugin Support silva , sepp , rescript	8	1718	February 3, 2021
Invalid character in sequence: b'U' User Support feature-classifier , silva	2	1082	February 14, 2021
separate archaea-only database from Silva database User Support import , silva	4	1268	February 8, 2021
Silva 138.1, which database do I download? Ref NR 99 or Ref? Other Bioinformatics Tools feature-classifier , silva	3	8409	January 7, 2021
How do I choose the database for the archaea amplicons anotation. General Discussion silva	6	1341	December 23, 2020
q2-fragment-insertion with silva v138 User Support silva , fragment-insertion	3	1963	January 8, 2021
Aligned sequences and Rescript Library Plugin Support silva , rescript	6	1105	October 14, 2020
Resources for using classify-consensus-blast on 16S data User Support feature-classifier , taxonomy , greengenes , silva	4	1504	August 8, 2020
Silva 138 for Qiime2 Ideas and Suggestions silva	12	8303	December 11, 2024
Taxonomic classification 'Taxon' field discrepancies User Support feature-classifier , taxonomy , ancom , silva	4	938	July 17, 2020
Feature Classifier only for V3 region User Support feature-classifier , taxonomy , silva	2	459	July 17, 2020
How to deal with the trailing number in taxa table? General Discussion feature-classifier , taxonomy , silva	2	739	March 22, 2020
classify-sklearn - Plugin error from feature-classifier: pop from empty list Technical Support feature-classifier , taxonomy , silva	3	1679	March 20, 2020
Memory and Classification for 18S User Support feature-classifier , silva , its	7	1218	April 13, 2020
Why does Greengenes assign more features at the class and order ranks than Silva? General Discussion taxonomy , greengenes , silva	8	2943	March 6, 2020
Insertion tree has dramatically reduced number of taxa User Support qiita , phylogeny , silva	5	561	April 3, 2020
Plugin error from feature-classifier when running Silva-132 Technical Support feature-classifier , taxonomy , silva	4	1907	February 28, 2020
Which Silva .txt file to use? User Support taxonomy , silva	4	2244	March 23, 2020
Steps for taxonomy assignment on dual-indexed sequence data generated by QIIME 1.9 User Support feature-classifier , silva , vsearch	4	793	March 22, 2020
Core-dumped error when training Silva V3V4 classifier Technical Support feature-classifier , silva	3	1144	January 30, 2020