Topics tagged silva

Topic	Replies	Views	Activity
Could "chloroplast" sequences actually be mitochondrial? Silva silva	1	494	March 8, 2023
problem with feature-classifier classify-consensus-vsearch Silva feature-classifier , taxonomy , silva	6	941	February 14, 2023
How to interpret SILVA taxonomic classifications Silva taxonomy , silva	2	636	February 9, 2023
Downloading SILVA database Silva silva	2	4674	January 30, 2023
Redoing analysis from QIIME 1, Archaea has mostly disappeared Silva taxonomy , silva	4	600	October 23, 2022
Differences of unassigned, unidentified, uncultured taxa. Silva taxonomy , silva	1	1296	June 9, 2022
silva138 16S database contains eukaryota after filtering Silva filtering , silva	2	1793	April 29, 2022
SILVA 138 assigning incorrect species Silva taxonomy , silva	2	1557	January 5, 2022
Can I use different versions of Silva for taxonomic classification and fragment insertion Silva feature-classifier , taxonomy , silva , fragment-insertion	4	746	December 8, 2021
Importing Multiplexed Paired End Sequence With Adaptors --> Demultiplexed Sequences Silva filtering , metadata , import , demux , feature-classifier , multiplexed , silva , 16s , cutadapt	3	1305	November 23, 2021
Questions about the SILVA 132 QIIME-compatible database, and using it for taxonomic classification of 16S rRNA amplicons Silva feature-classifier , taxonomy , silva	2	2799	August 27, 2021
Silva 132 Database, which taxonomy & reference sequence files to select for classifier training? Silva import , feature-classifier , taxonomy , silva	6	1974	February 19, 2021
ERROR in Downstream analyses (taxonomic) for "Microbiome analyst" Silva feature-classifier , taxonomy , silva	1	1007	February 16, 2021
RESCRIPt, SEPP and database correlation Silva silva , sepp , rescript	8	1764	February 3, 2021
Invalid character in sequence: b'U' Silva feature-classifier , silva	1	1102	January 14, 2021
separate archaea-only database from Silva database Silva import , silva	3	1315	January 8, 2021
Silva 138.1, which database do I download? Ref NR 99 or Ref? Silva feature-classifier , silva	3	8966	January 7, 2021
How do I choose the database for the archaea amplicons anotation. Silva silva	6	1410	December 23, 2020
q2-fragment-insertion with silva v138 Silva silva , fragment-insertion	2	2004	December 7, 2020
Aligned sequences and Rescript Silva silva , rescript	6	1142	October 14, 2020
Resources for using classify-consensus-blast on 16S data Silva feature-classifier , taxonomy , greengenes , silva	3	1564	July 7, 2020
Silva 138 for Qiime2 Silva silva	8	8435	June 25, 2020
Taxonomic classification 'Taxon' field discrepancies Silva feature-classifier , taxonomy , ancom , silva	3	983	June 16, 2020
Feature Classifier only for V3 region Silva feature-classifier , taxonomy , silva	1	472	June 15, 2020
How to deal with the trailing number in taxa table? Silva feature-classifier , taxonomy , silva	2	760	March 22, 2020
classify-sklearn - Plugin error from feature-classifier: pop from empty list Silva feature-classifier , taxonomy , silva	3	1713	March 20, 2020
Memory and Classification for 18S Silva feature-classifier , silva , its	6	1264	March 13, 2020
Why does Greengenes assign more features at the class and order ranks than Silva? Silva taxonomy , greengenes , silva	8	3018	March 6, 2020
Insertion tree has dramatically reduced number of taxa Silva qiita , phylogeny , silva	4	602	March 3, 2020
Plugin error from feature-classifier when running Silva-132 Silva feature-classifier , taxonomy , silva	3	1916	August 16, 2019