Topics tagged otus

Topic	Replies	Views	Activity
Pielou’s evenness, Faith's PD and Shannon’s diversity indices for ASVs instead of "species" General Discussion otus , alpha , asv	6	3269	June 1, 2020
Tracing the origin of 'Feature ID / OTU ID" name User Support feature-table , otus , ids	2	2453	April 15, 2020
Closed Reference OTU picking vs taxonomic annotation General Discussion taxonomy , otus , closed-reference , best-of-the-forum	2	3338	February 4, 2020
Fetures ID to OTU Technical Support otus	2	1300	December 10, 2019
barplot from de-novo OTUs: ValueError: Feature IDs found in the table are missing from the taxonomy User Support taxonomy , otus , barplot	23	1779	November 22, 2019
ASVs versus OTUs, is conversion possible General Discussion otus , asv	1	1911	August 23, 2019
Re-obtaining rep-seqs and feature tables after filtering for barcoding User Support dada2 , filtering , taxonomy , otus	6	4017	August 15, 2019
Fix required: Tips in a tree detected as repeated User Support core-metrics , otus , closed-reference , tree , sepp	7	765	October 1, 2024
uneven taxonomy and OTU table length after filtering Technical Support taxonomy , otus , merge	3	1098	June 21, 2019
Create Graphlan input files from OTU table Other Bioinformatics Tools otus	2	1085	July 19, 2019
Assessing only taxonomic diversity for each sample? General Discussion otus , diversity , power	4	698	June 27, 2019
OTU clustering using ASV table User Support otus , asv	4	1626	June 17, 2019
Use of rarefacted Table General Discussion otus , rarefaction , normalization	3	3177	May 15, 2019
fasta file analysis in QIIME2 User Support dada2 , chimera , otus , fasta	10	4745	June 10, 2019
Qiime2r - invalid “phyloseq” object: Component sample names do not match Library Support metadata , taxonomy , otus , qiime2-r	6	10653	May 10, 2019
What is the simplest way of working out how many representative sequences exist in each sample of a QIIME2 experiment? User Support otus	6	1251	April 12, 2019
Getting a bit lost in the workflow - post deblur User Support deblur , otus	3	1041	February 9, 2019
Diversity analysis with OTU table text file Silva otus , silva , diversity , moving-pictures	3	2549	January 13, 2019
Closed-reference otu picking from fastq file? User Support import , taxonomy , otus , vsearch , fastq	4	722	September 14, 2018
Create OTU table from table.qza & taxonomy.qza User Support export , otus	18	7409	September 7, 2018
Denoising vs OTU picking methods User Support dada2 , otus , asv	8	2643	September 3, 2018
What are the differences between two OTU tables User Support otus	4	729	August 12, 2018
Importing FASTA sequences for OTU picking/taxonomy assigning User Support import , taxonomy , otus	13	3302	August 7, 2018
Otu_map.txt in QIIME2 User Support dada2 , metadata , taxonomy , pending-development , otus , otu-map	4	1127	August 5, 2018
Convert denoising OTUID into genbank accession number Silva dada2 , taxonomy , otus , silva	5	804	June 28, 2018
When to use OTU clustering User Support otus	2	902	June 15, 2018
Subsampled open reference OTU clustering User Support otus	8	2195	May 18, 2018
How to add taxonomy to feature-table.qza and get otu id of each taxonomy and number of otus User Support taxonomy , otus	26	16914	April 28, 2018
What is the reason why there are multiple OTU identifiers in the same species? - Taxonomy assignments in QIIME User Support otus	5	2120	April 5, 2018
I want to change my OTU id into gg_13_8 OTU ID User Support greengenes , otus	2	1422	March 26, 2018