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Pielou’s evenness, Faith's PD and Shannon’s diversity indices for ASVs instead of "species"
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6
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3269
|
June 1, 2020
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Tracing the origin of 'Feature ID / OTU ID" name
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2
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2453
|
April 15, 2020
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Closed Reference OTU picking vs taxonomic annotation
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2
|
3338
|
February 4, 2020
|
|
Fetures ID to OTU
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2
|
1300
|
December 10, 2019
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barplot from de-novo OTUs: ValueError: Feature IDs found in the table are missing from the taxonomy
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23
|
1779
|
November 22, 2019
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ASVs versus OTUs, is conversion possible
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1
|
1911
|
August 23, 2019
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Re-obtaining rep-seqs and feature tables after filtering for barcoding
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6
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4017
|
August 15, 2019
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|
Fix required: Tips in a tree detected as repeated
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7
|
765
|
October 1, 2024
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uneven taxonomy and OTU table length after filtering
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3
|
1098
|
June 21, 2019
|
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Create Graphlan input files from OTU table
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2
|
1085
|
July 19, 2019
|
|
Assessing only taxonomic diversity for each sample?
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4
|
698
|
June 27, 2019
|
|
OTU clustering using ASV table
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|
4
|
1626
|
June 17, 2019
|
|
Use of rarefacted Table
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|
3
|
3177
|
May 15, 2019
|
|
fasta file analysis in QIIME2
|
|
10
|
4745
|
June 10, 2019
|
|
Qiime2r - invalid “phyloseq” object: Component sample names do not match
|
|
6
|
10653
|
May 10, 2019
|
|
What is the simplest way of working out how many representative sequences exist in each sample of a QIIME2 experiment?
|
|
6
|
1251
|
April 12, 2019
|
|
Getting a bit lost in the workflow - post deblur
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|
3
|
1041
|
February 9, 2019
|
|
Diversity analysis with OTU table text file
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|
3
|
2549
|
January 13, 2019
|
|
Closed-reference otu picking from fastq file?
|
|
4
|
722
|
September 14, 2018
|
|
Create OTU table from table.qza & taxonomy.qza
|
|
18
|
7409
|
September 7, 2018
|
|
Denoising vs OTU picking methods
|
|
8
|
2643
|
September 3, 2018
|
|
What are the differences between two OTU tables
|
|
4
|
729
|
August 12, 2018
|
|
Importing FASTA sequences for OTU picking/taxonomy assigning
|
|
13
|
3302
|
August 7, 2018
|
|
Otu_map.txt in QIIME2
|
|
4
|
1127
|
August 5, 2018
|
|
Convert denoising OTUID into genbank accession number
|
|
5
|
804
|
June 28, 2018
|
|
When to use OTU clustering
|
|
2
|
902
|
June 15, 2018
|
|
Subsampled open reference OTU clustering
|
|
8
|
2195
|
May 18, 2018
|
|
How to add taxonomy to feature-table.qza and get otu id of each taxonomy and number of otus
|
|
26
|
16914
|
April 28, 2018
|
|
What is the reason why there are multiple OTU identifiers in the same species? - Taxonomy assignments in QIIME
|
|
5
|
2120
|
April 5, 2018
|
|
I want to change my OTU id into gg_13_8 OTU ID
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|
2
|
1422
|
March 26, 2018
|