Topics tagged filtering

Topic	Replies	Views	Activity
hi i have aproblem with my mainfest file when ahead for it read only part of it as shown in pic and i have another with mainfest file also when importing it for paired end Technical Support deblur , filtering , demux , import , dada2	3	414	March 8, 2021
How to filter OUTS based both length and frequence ？ User Support filtering	2	646	December 5, 2020
Few sequences were left after filtering User Support filtering , dada2	5	469	October 25, 2020
methods for processeng fungal ITS2 DATA IN QIIME 2 Technical Support deblur , gneiss , filtering , metadata , feature-table , dada2 , import , demux , install , feature-classifier	2	597	August 27, 2020
gathering a random subset of reference sequences User Support filtering , filter-features , best-of-the-forum	4	1049	September 12, 2020
filter for taxonomic completeness User Support feature-table , filtering , taxonomy	9	876	August 22, 2020
filtering sequences by sequence header User Support filtering	8	987	August 15, 2020
filtering ASVs by abundance User Support feature-table , filtering , dada2	3	4119	July 30, 2020
Analysis microbial diversity General Discussion feature-table , filtering , feature-classifier , taxonomy , dada2	5	813	May 3, 2020
filter demux-paired-end.qza based on metadata columns User Support filtering , import , metadata	2	611	April 21, 2020
How to get Positive Control gut or vaginal microbiome dataset General Discussion mock-communities , taxonomy , filtering	2	446	January 16, 2020
Amount of reads filtered after running dada2 User Support dada2 , filtering	2	873	February 9, 2020
Up to 97% of sequences being removed by filtering/denoising in DADA2 User Support chimera , filtering , dada2	5	1380	January 21, 2020
Filtering samples and seqs for downstream analysis User Support filtering	4	2834	January 9, 2020
Quality filtering from fna input User Support filtering	5	425	January 5, 2020
Using DADA2, losing 50% of reads after filtering and 80% of reads by the end User Support dada2 , filtering	4	3561	January 5, 2020
How to remove unclassified features from a table? User Support filtering	10	2918	January 4, 2020
How should different ASVs of the same species be interpreted? General Discussion filtering , dada2 , taxonomy , feature-classifier	2	3608	November 10, 2019
How to filter sequences which has more than 8 same consecutive nucleotides in fastq file? User Support extract-barcodes , filtering	5	733	December 6, 2019
Finding a target organism User Support filtering , taxonomy	3	481	November 3, 2019
Contaminated samples or Bioinformatics problem? [16s v4 515F/806R] General Discussion dada2 , filtering , decontam	7	1741	September 25, 2019
Pull out subset of sequences data User Support filtering	2	1180	October 21, 2019
Abundance filter for bacterial community analysis General Discussion dada2 , filtering	5	1664	August 30, 2019
Filtering repseqs for a certain phylogeny User Support filtering	2	493	September 13, 2019
When to make the phylogenetic tree General Discussion filtering , tree	1	655	August 6, 2019
Removal of singletons: feature-table-filter not working User Support feature-table , filtering	4	643	August 30, 2019
Re-obtaining rep-seqs and feature tables after filtering for barcoding User Support otus , taxonomy , filtering , dada2	6	3495	August 15, 2019
Filtering a feature-table and its rep-seqs file simultaneously. Ideas and Suggestions filtering	0	419	July 6, 2019
Error while filtering reps-seqs.qza User Support filtering	4	972	June 20, 2019
Assigning taxonomy and filtering chloroplasts/mitochondria- removing all sample IDs? User Support taxonomy , filtering	8	3385	June 1, 2019