Topics tagged feature-table

Topic	Replies	Views	Activity
"ValueError: Path: 'None' already exists and is not a cache" when converting file formats User Support dada2 , export , feature-table	6	434	August 14, 2023
Error with filter-features-conditionally on picrust2 outputs Community Plugin Support filtering , feature-table , picrust	3	253	August 10, 2023
merging a new filtered dataset with my old dataset General Discussion feature-table	1	162	August 7, 2023
Two question about represent sequence in DADA2 General Discussion feature-table	2	178	July 29, 2023
rarefying qPCR normalized 16S sequences Technical Support feature-table	10	302	August 25, 2023
non-chimeric Feature count - what is all about? User Support feature-table	4	348	August 19, 2023
only retain phylum info for tree building User Support feature-table	11	463	August 19, 2023
What do I do with my OTU and taxonomy tables? General Discussion taxonomy , feature-table	1	158	July 18, 2023
How to generate a differential abundance graph in QIIME2 with taxon as label instead of Feature ID/Sequence User Support metadata , taxonomy , feature-table , ancom	2	496	August 7, 2023
Failed in Reads merging User Support dada2 , feature-table , merge , qiime2r	6	324	August 6, 2023
Facing merging problem in dada2-plugin User Support dada2 , feature-table , merge	16	390	July 13, 2023
FeatureTable and FeatureData General Discussion feature-table	1	149	May 31, 2023
Retaining reverse reads during denoising and Quality summary vs denoising output of datasets User Support dada2 , feature-table	4	175	July 31, 2023
Understanding naive bayes+sklearn classifier, top-hit identity distribution User Support feature-classifier , taxonomy , feature-table	11	1062	June 28, 2023
too many features after DADA2 User Support dada2 , feature-table	6	261	June 25, 2023
Getting low feature counts while using dada2 plugin User Support dada2 , filtering , feature-table , filter-features	18	317	June 23, 2023
minimum freqeuncy threshold User Support feature-table	2	178	June 22, 2023
merging my feature table with taxonomy table User Support taxonomy , feature-table	6	545	June 22, 2023
Before I get into CLR transformation, is there any step to change my OTU table ? General Discussion feature-table , normalization	8	1218	May 18, 2023
What's formula of The Retained Features number? Other Bioinformatics Tools feature-table , summarize	3	299	May 15, 2023
DADA2 takes too much time for analysis Technical Support dada2 , feature-table	4	428	June 4, 2023
Dada2 feature table: Frequency per sample & Frequency per sample General Discussion dada2 , feature-table	2	370	May 4, 2023
Are there difference rarefaction cut-off and rarefying in the micorbiome analysis ? General Discussion feature-table , rarefaction	9	930	April 26, 2023
denoise-ccs- loosing almost 60% of reads at denoising step of dada2 User Support dada2 , feature-table	12	1037	May 21, 2023
Input table used for core-features core microbiome User Support feature-table , core-features	7	430	May 15, 2023
Keep ASV IDs when converting to relative abundance General Discussion biom , feature-table , relative-frequency	6	761	April 5, 2023
FeatureTable[Frequency] and [Sequence] from external DADA2 output User Support dada2 , import , feature-table	6	918	April 23, 2023
q2-repeat-rarefy: QIIME2 plugin for generating the average rarefied table for library size normalization using repeated rarefaction Plugins feature-table , rarefaction , normalization , library	1	1614	March 22, 2023
IonTorrent 16S Metagenomic Kit - Consensus feature table across V regions General Discussion feature-table , ion-torrent	9	440	March 17, 2023
rarefy feature table General Discussion feature-table	3	186	March 16, 2023